Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq407 114 1e-20 seq503 109 6e-19 seq38 104 3e-17 seq828 91.5 2e-13 seq1 87.8 2e-12 seq292 86.0 7e-12 >seq407 Length=3256691 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | |||| |||||| |||| || ||| || ||||| |||||||| | Sbjct 904217 TGCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 904276 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||| || ||| ||||||| ||||||||||| | | Sbjct 904277 AGAGCGTGCGGCCATCCTCCAGCTGCTGGCTGGCAAATATCAGACGCTGCTGGTCAGGTG 904336 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| || || |||| || | | ||||| | | || | Sbjct 904337 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCATTGGGCTCGA 904396 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595 | || | |||||||| |||||||| || || || |||||||| ||||||| Sbjct 904397 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATTT 904447 >seq503 Length=1449082 Score = 109 bits (120), Expect = 6e-19 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || ||| || ||||| ||||| || || ||||||| | Sbjct 1047250 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCAGCCA 1047191 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || || | | ||||||||||| || | || ||||| Sbjct 1047190 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGG--GGGATGCCTTCCTTA 1047133 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | | | | ||||| || | ||||| |||| |||||| Sbjct 1047132 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAAGGTGATG 1047073 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| ||||| || || || ||||| | ||||||| Sbjct 1047072 GTCTTGCCGGTCAGGGTCTTCACGAAGATATACATTTTG 1047034 >seq38 Length=10264441 Score = 104 bits (114), Expect = 3e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | |||| |||||| |||| || ||| || ||||| |||||||| | Sbjct 9540874 TGCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 9540815 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||| | | || || ||||| |||||||| ||||||| ||||||||||| | | Sbjct 9540814 AGAGTGTGTGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 9540755 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| || || |||| || | | ||||| | | || | Sbjct 9540754 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCAC-GGGCTCGA 9540696 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| |||||| | || || || |||||||| ||||| Sbjct 9540695 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 9540647 >seq828 Length=339631 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| |||| ||| ||| || ||||| |||||||| || ||||||| | Sbjct 9784 ACGCAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCTGCC 9725 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| || || || | | ||||||||| || | || |||| Sbjct 9724 ATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCACGGGGGATGCCTTCCTA 9665 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| |||| | | | ||||| || | ||||| |||| ||| | Sbjct 9664 ATCCTGGATCTTGGTCTTCACATATTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGGT 9605 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| |||| || | || || || |||| ||||||||| Sbjct 9604 GGTCTTGCTGGTGGGGGTCTTCACGAAGACCTGCATTTTG 9565 >seq1 Length=21314971 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 46380 GCAACACCAGATGCAA--TGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| |||||| |||| || ||||| || ||||| |||||||| || || |||| | Sbjct 4712578 GCAGCACCAGGTGCAGGTTGGACTCT--TTCTGGATGTTGTAGTCTGAGAGCGTGCAGCC 4712521 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| |||||||| || |||| ||||||||||| | || | |||||| Sbjct 4712520 ATCCTCCAGCTGTTTGCCGGCAAACATCAGACGCTGCTGGTCAGGTGGGATAGCCTCCTT 4712461 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| || || |||| || | ||||| || | || || || | ||||| Sbjct 4712460 GTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTGAT 4712401 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||| | || || || |||||||| || || Sbjct 4712400 GGTCTTGCCCATGAGGGTCTTCACAAAGATCTGTAT 4712365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || ||| || ||||| |||||||| || ||||||| | Sbjct 18631144 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA--GAGTGCGGCCA 18631087 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| || || || ||||||| ||||||||||| | || | | |||||| Sbjct 18631086 TCCTCCAGCTGTTTACCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCTTCCTTG 18631027 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 | || || |||| || | ||||| || | || || || | |||||| Sbjct 18631026 TATTGAATTTTGGCTTTGACATTCTTAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 18630967 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| | || || |||||||| ||||| Sbjct 18630966 GTCTTGCCCGTGACAGTCTTCACAAAGATCTGCAT 18630932 >seq292 Length=4239571 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| ||||| | ||| |||||| || ||||||||||| || | |||||| | | Sbjct 2943975 CAACACAAGATGAAGAGTAGACTCCTTCTGAATATTGTAGTCAGACAAAGTGCGTCCATA 2944034 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || | |||||| || || |||| | ||||| || | || | | ||||| || Sbjct 2944035 TTCCAGTTCCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2944094 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||| | | | | ||| || | ||| || || | |||||||| Sbjct 2944095 CTGGATCTTGACCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 2944154 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| || ||||| || || || ||||||||| Sbjct 2944155 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 2944191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565187839425120