Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq407 114 1e-20
seq503 109 6e-19
seq38 104 3e-17
seq828 91.5 2e-13
seq1 87.8 2e-12
seq292 86.0 7e-12
>seq407
Length=3256691
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| |||| | |||| |||||| |||| || ||| || ||||| |||||||| |
Sbjct 904217 TGCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 904276
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || ||||| | || || ||||||| || ||| ||||||| ||||||||||| | |
Sbjct 904277 AGAGCGTGCGGCCATCCTCCAGCTGCTGGCTGGCAAATATCAGACGCTGCTGGTCAGGTG 904336
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | ||||||||| || || |||| || | | ||||| | | || |
Sbjct 904337 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCATTGGGCTCGA 904396
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595
| || | |||||||| |||||||| || || || |||||||| |||||||
Sbjct 904397 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATTT 904447
>seq503
Length=1449082
Score = 109 bits (120), Expect = 6e-19
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| |||| || ||| || ||||| ||||| || || ||||||| |
Sbjct 1047250 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCAGCCA 1047191
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || ||||||||||| || || || | | ||||||||||| || | || |||||
Sbjct 1047190 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGG--GGGATGCCTTCCTTA 1047133
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||| | | | | ||||| || | ||||| |||| ||||||
Sbjct 1047132 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAAGGTGATG 1047073
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|| ||||| ||||| || || || ||||| | |||||||
Sbjct 1047072 GTCTTGCCGGTCAGGGTCTTCACGAAGATATACATTTTG 1047034
>seq38
Length=10264441
Score = 104 bits (114), Expect = 3e-17
Identities = 161/229 (70%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| |||| | |||| |||||| |||| || ||| || ||||| |||||||| |
Sbjct 9540874 TGCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 9540815
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || ||| | | || || ||||| |||||||| ||||||| ||||||||||| | |
Sbjct 9540814 AGAGTGTGTGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 9540755
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | ||||||||| || || |||| || | | ||||| | | || |
Sbjct 9540754 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCAC-GGGCTCGA 9540696
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || | |||||||| |||||| | || || || |||||||| |||||
Sbjct 9540695 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 9540647
>seq828
Length=339631
Score = 91.5 bits (100), Expect = 2e-13
Identities = 152/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| |||| ||| ||| || ||||| |||||||| || ||||||| |
Sbjct 9784 ACGCAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCTGCC 9725
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||| || || || | | ||||||||| || | || ||||
Sbjct 9724 ATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCACGGGGGATGCCTTCCTA 9665
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| |||||| |||| | | | ||||| || | ||||| |||| ||| |
Sbjct 9664 ATCCTGGATCTTGGTCTTCACATATTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGGT 9605
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
||| |||| || | || || || |||| |||||||||
Sbjct 9604 GGTCTTGCTGGTGGGGGTCTTCACGAAGACCTGCATTTTG 9565
>seq1
Length=21314971
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/216 (69%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 46380 GCAACACCAGATGCAA--TGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| |||||| |||| || ||||| || ||||| |||||||| || || |||| |
Sbjct 4712578 GCAGCACCAGGTGCAGGTTGGACTCT--TTCTGGATGTTGTAGTCTGAGAGCGTGCAGCC 4712521
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||| |||||||| || |||| ||||||||||| | || | ||||||
Sbjct 4712520 ATCCTCCAGCTGTTTGCCGGCAAACATCAGACGCTGCTGGTCAGGTGGGATAGCCTCCTT 4712461
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| || || |||| || | ||||| || | || || || | |||||
Sbjct 4712460 GTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTGAT 4712401
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| |||||| | || || || |||||||| || ||
Sbjct 4712400 GGTCTTGCCCATGAGGGTCTTCACAAAGATCTGTAT 4712365
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/215 (69%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||| |||| || ||| || ||||| |||||||| || ||||||| |
Sbjct 18631144 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA--GAGTGCGGCCA 18631087
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || ||||| || || || ||||||| ||||||||||| | || | | ||||||
Sbjct 18631086 TCCTCCAGCTGTTTACCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCTTCCTTG 18631027
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
| || || |||| || | ||||| || | || || || | ||||||
Sbjct 18631026 TATTGAATTTTGGCTTTGACATTCTTAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 18630967
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||||||| | || || |||||||| |||||
Sbjct 18630966 GTCTTGCCCGTGACAGTCTTCACAAAGATCTGCAT 18630932
>seq292
Length=4239571
Score = 86.0 bits (94), Expect = 7e-12
Identities = 149/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
|||||| ||||| | ||| |||||| || ||||||||||| || | |||||| | |
Sbjct 2943975 CAACACAAGATGAAGAGTAGACTCCTTCTGAATATTGTAGTCAGACAAAGTGCGTCCATA 2944034
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| || | |||||| || || |||| | ||||| || | || | | ||||| ||
Sbjct 2944035 TTCCAGTTCCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2944094
Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560
| |||||| ||| | | | | ||| || | ||| || || | ||||||||
Sbjct 2944095 CTGGATCTTGACCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 2944154
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|| ||||| || ||||| || || || |||||||||
Sbjct 2944155 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 2944191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565187839425120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |