Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq954 82.4 6e-11 seq800 82.4 6e-11 >seq954 Length=135146 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 |||| || | ||||| || || ||| | ||||||| | ||| || ||| |||| Sbjct 806 CCTCGTGCTGCACATGGCACGTGTATCTCTGCTCTTCTCCGGAAGGCACCACTACAGCTG 747 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| ||||||||||| || ||||| ||||| ||||| || || | | || Sbjct 746 CCCACTTCTGGAAAGTTCCATCCCCTGCTGGCCTGGTCTCCACAAGCTCCGTGTCCTGAG 687 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | | | ||| | || ||||| || | | || |||||||| |||||||| || Sbjct 686 TTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTCTGATCTCCGCAGGGTAGAAGCCCAGGG 627 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 626 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 597 >seq800 Length=371701 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 |||| || | ||||| || || ||| | ||||||| | ||| || ||| |||| Sbjct 99405 CCTCGTGCTGCACATGGCACGTGTATCTCTGCTCTTCTCCGGAAGGCACCACTACAGCTG 99346 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| ||||||||||| || ||||| ||||| ||||| || || | | || Sbjct 99345 CCCACTTCTGGAAAGTTCCATCCCCTGCTGGCCTGGTCTCCACAAGCTCCGTGTCCTGAG 99286 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | | | ||| | || ||||| || | | || |||||||| |||||||| || Sbjct 99285 TTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTCTGATCTCCGCAGGGTAGAAGCCCAGGG 99226 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 99225 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 99196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397712510975136