Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_016447.1 Length=219474 Score E Sequences producing significant alignments: (Bits) Value seq542 156 6e-33 seq314 132 7e-26 >seq542 Length=1979518 Score = 156 bits (172), Expect = 6e-33 Identities = 182/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 197398 CCGCTAAATATCTCAAACGCGACAGATATTGAGAACGTGGCTTGGAACGGCCCTAAAATC 197457 || |||||||||||| || ||||| |||||| |||| | ||||| || || |||| Sbjct 15248 CCCCTAAATATCTCAGTAGCCACAGACATTGAGCACGTCACCTGGAATGGTCCCAAAAAT 15307 Query 197458 GCTTTAGCATTTGCCAATCCTAAAGACGTTACCATAATGGATAAAAGCTACCAGGGTCGT 197517 ||| | || || || ||||| |||| || | | | ||||| |||||||||||||| || Sbjct 15308 GCTCTTGCTTTAGCAAATCCCAAAGGTGTAATCCTTATGGACAAAAGCTACCAGGGCCGA 15367 Query 197518 GTCAACATTAGCCAAACCAACTACTCTTTGTGCATTAGGAACCTGACCGTGAATGATGCT 197577 | ||||| | | || || ||||| || ||| || || ||||| |||| || || Sbjct 15368 CTAAACATCACCAAATGGAATTACTCCCTGCACATCAGCAATCTGACTCTGAACGACGCA 15427 Query 197578 GGTTCGTATAAGGCCCAAATTAACAAAAATAATTCCCAAGTCACCACCAAGGAGGAATTT 197637 || | || || ||||| || |||||||| ||||| |||||||||| ||||| |||||| Sbjct 15428 GGCTTCTACAAAGCCCAGATAAACAAAAAGAATTCTGAAGTCACCACTAAGGAAGAATTT 15487 Query 197638 ACTCTG 197643 || ||| Sbjct 15488 ACCCTG 15493 >seq314 Length=2703318 Score = 132 bits (146), Expect = 7e-26 Identities = 189/264 (72%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 209129 TCATCAAACACCTGTAGTCTGATTTTCCAGTCCTGCTCAAACATGGTATCTTTTAAAACC 209188 ||| |||||||||| || ||||| ||||| || |||||| ||||||| | || || ||| Sbjct 74905 TCACCAAACACCTGCAGCCTGATCTTCCATTCTTGCTCAGACATGGTCTTCTTCAACACC 74846 Query 209189 CTCATAATATATATGTTAGCATCCTCTTTTTGAACGCGAGACAAATATAACGCACCGGAC 209248 ||||| || || ||||| ||||||||||| || || ||||| || | || || || Sbjct 74845 CTCATGATGTAGATGTTGGCATCCTCTTTCTGGACCTTAGACATGTACAGTGCGCC--AC 74788 Query 209249 T--GGGAATCCAATCGAACTCGCCCTTTGAATTTATTGTCAAAATATTTTAAGCGTTTTA 209306 | | ||||| | || || | ||||| ||| |||| ||||| || || | | | | | Sbjct 74787 TTCGAGAATCGAGTCTGACCCTGCCTTTAAATCTATTTTCAAAGTACTTAAGTCTTCTGA 74728 Query 209307 CATCCCAATCCGCTATCTTTTGATCATAGGTACAAAACCATGTAATCTCTCTAACATTTT 209366 ||||||| || || ||||| | | ||| ||| ||||||| || || || || || | Sbjct 74727 CATCCCAGTCTGCGATCTTCAGGTTATAAGTATAAAACCAAGTTATTCCTTGGACGTTCT 74668 Query 209367 CAGGAAGAGATTCTGAAATGTTCA 209390 |||| || || || ||||||| Sbjct 74667 CAGGTAGGCTCTCGGAGATGTTCA 74644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 702125989211840