Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq526 253 2e-62
seq630 192 7e-44
seq2 111 2e-19
seq57 102 1e-16
seq867 89.7 6e-13
>seq526
Length=1402496
Score = 253 bits (280), Expect = 2e-62
Identities = 524/770 (68%), Gaps = 16/770 (2%)
Strand=Plus/Plus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| |||||||| | ||||| || || |||| |||| || || || || ||||||||||
Sbjct 113378 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 113436
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACA 36988
| ||||| ||||| |||||||| ||||||||||| | |||| | | | | ||| |
Sbjct 113437 CCAGTGAAATATTCTCCATAAAGTCAAATGGATTC--TCTATTCTGAAAACCTTGCTAAA 113494
Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048
| |||| || | || || || ||||| || ||||||| |||||| |
Sbjct 113495 ACCCAGTTCCAGCAT--GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCA 113552
Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108
|| || ||||| || | || || | || || |||||| || |||||| ||
Sbjct 113553 ATTCATCCCAATGAGCTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAAC 113612
Query 37109 AGCATCTTTAACTATATTAACAATAACT---TCTTCAGTTGGGGGATATTTTAAATATTT 37165
||||| || ||| | | | ||| || || | ||| | | || | |||
Sbjct 113613 AGCATTGATAGTTATTT---CTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTT 113669
Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225
|||| | || ||||||| | |||||||| |||||||| || | | |||| |||
Sbjct 113670 GAACATCAGGCAAGCAAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGA 113729
Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285
||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||||| ||
Sbjct 113730 AAATGTGAGGCCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACC 113789
Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT 37345
||||||| | || ||||| ||||| ||||| ||||||| ||| ||| | || |
Sbjct 113790 AGAAAAGTAGATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTC 113849
Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTC 37405
| || |||||| | |||||||||||| || ||||| || |||||
Sbjct 113850 TTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTC 113909
Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465
||| || || |||||||| | |||| | |||| |||| ||||| || || || |
Sbjct 113910 AATGGCATTGAAGAGAAATTCCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAG 113969
Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525
|| |||||||||||| || || ||||| || || || || || ||||| ||||| | |
Sbjct 113970 ACCATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCC 114029
Query 37526 TTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584
||| | |||| |||| || | ||| | || | ||||||||||| ||||| ||||
Sbjct 114030 TTCTG-TAATCTGAAGTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCAT 114088
Query 37585 CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634
|||| ||||||| |||||| ||||| | |||||| | ||| || |||
Sbjct 114089 CACTTGCTGCAAGGAAAGCCAGAACGTGAGATATAAAGTATCTCTCCTCA 114138
>seq630
Length=879232
Score = 192 bits (212), Expect = 7e-44
Identities = 510/768 (66%), Gaps = 27/768 (4%)
Strand=Plus/Plus
Query 36876 ACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAG 36934
|||||||| | | || || || |||| |||| || || || || |||||||||| ||
Sbjct 417528 ACTCCCATCCTCTAATGCTCACCTACTC-TCTTCTCAAAGAAGTTAATCTTTCCTTCCAG 417586
Query 36935 TGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACATGAT 36992
|| ||||| |||||||| ||||||||||| | || | | | | | ||| |
Sbjct 417587 TGGAATATTCTCCATAAAGTCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAAACCC 417644
Query 36993 AATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTT 37052
| |||| || ||| || || || ||||| || ||||||| |||||| | ||
Sbjct 417645 AGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTC 417704
Query 37053 ATACCAATTAGTTTTACTGGAATTGCATCT---TGAAGAAATAGTTTTTCTATTATTACA 37109
|| ||||| || || || || | |||| ||| ||| | | || |||| |||
Sbjct 417705 ATCCCAATGAGCTTCACAGGCAAG--ATCTCAGTGAGGAACTCCTGTT-CTATCCGAACA 417761
Query 37110 GCATCTTTAACTATATTAACAATAACTTCT---TCAGTTGGGGGATATTTTAAATATTTA 37166
|||| ||| ||| | | | || | || | ||| | | || | ||
Sbjct 417762 GCATTGATAATTATTT---CTCTTTCTCCCGGCTCTGATGGTTTGTGTACTAGGTGTTGG 417818
Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226
|||| | || ||||||||||| |||||||| |||||||| || | | ||||||||||
Sbjct 417819 AACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAA 417878
Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286
|| || | || ||||| | |||| ||| |||| ||| ||||| | || ||||| |||
Sbjct 417879 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCA 417938
Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346
|||||||| | ||||| ||||| ||||| || || ||| | || |
Sbjct 417939 GAAAAGAAGACGCCTTCCACTGCAGCAAAGGCA-------GTTCACCATAGGTAGCCTCT 417991
Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406
| || |||||| | || |||||||| || ||||| || ||||||
Sbjct 417992 TTGTCCCCAATCCAGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCA 418051
Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466
|| || || |||||||| | |||| |||| ||||||| || ||| | || | |
Sbjct 418052 ATGGCATTGAAGAGAAATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGA 418111
Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526
|||||||||||||| || || || || || | || || || ||||| ||||| | ||
Sbjct 418112 CTATACATTTCAGAATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCC 418171
Query 37527 TCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585
|| | |||| ||||| || | ||| | || | ||||||||||| ||||| || ||
Sbjct 418172 TCTG-TAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTC 418230
Query 37586 ACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633
||| |||||||||||| ||||| | |||||| ||||| || ||
Sbjct 418231 ACTTGCTGCAAAGAAACTCAGAACGTGGGATATAAAGTGTCTCTCCTC 418278
>seq2
Length=18007423
Score = 111 bits (122), Expect = 2e-19
Identities = 102/129 (79%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
|||||||| || || | |||||||||||| || | || ||||| | |||| ||| ||
Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| |||
Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCT 1941368
Query 37320 ACAAGACGT 37328
|| | ||||
Sbjct 1941367 ACGACACGT 1941359
Score = 86.0 bits (94), Expect = 7e-12
Identities = 84/106 (79%), Gaps = 2/106 (2%)
Strand=Plus/Minus
Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498
|||| |||| ||||| ||||| || | ||||||||||||||| || || ||||| || ||
Sbjct 1939021 ATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1938962
Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACATC 37543
|| || |||||||| ||||| | ||||| | |||| ||||| ||
Sbjct 1938961 AATTTGGAAACCATAGAAACAGCGGGCTTCTG-TAATCTGAACTTC 1938917
Score = 86.0 bits (94), Expect = 7e-12
Identities = 77/94 (82%), Gaps = 2/94 (2%)
Strand=Plus/Minus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| |||||||| | ||||| || || |||| |||| || || || || ||||||||||
Sbjct 1943248 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 1943190
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964
| ||||| ||||| |||||||| |||||||||||
Sbjct 1943189 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 1943156
>seq57
Length=8566406
Score = 102 bits (112), Expect = 1e-16
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || |
Sbjct 1418655 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCTGGCATAAGACCTCTCTTCT 1418714
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||| ||||| || ||||||||||| || ||||||| ||||| || || || || |
Sbjct 1418715 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 1418774
Query 37318 CTAC 37321
| ||
Sbjct 1418775 CCAC 1418778
>seq867
Length=266704
Score = 89.7 bits (98), Expect = 6e-13
Identities = 112/151 (74%), Gaps = 6/151 (4%)
Strand=Plus/Minus
Query 36818 CTTCATTT--TTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATT--ACTATTCA 36873
||||| || |||| || || |||| || ||||| | | ||| | || ||| ||
Sbjct 180941 CTTCAGTTCATTTAGAAGTCAGCATCCAAGGTAAAAT--AATTCTCTGTTGGACTTGACA 180884
Query 36874 TAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTA 36933
| |||||||| | ||||| || || |||| |||| || || || ||||||||||| |
Sbjct 180883 TCACTCCCATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCA 180824
Query 36934 GTGATATATTTTCCATAAAATCAAATGGATT 36964
|||| ||||| |||||||| |||||||||||
Sbjct 180823 GTGAAATATTCTCCATAAAGTCAAATGGATT 180793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592263817262240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |