Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq526 253 2e-62 seq630 192 7e-44 seq2 111 2e-19 seq57 102 1e-16 seq867 89.7 6e-13 >seq526 Length=1402496 Score = 253 bits (280), Expect = 2e-62 Identities = 524/770 (68%), Gaps = 16/770 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 113378 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 113436 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACA 36988 | ||||| ||||| |||||||| ||||||||||| | |||| | | | | ||| | Sbjct 113437 CCAGTGAAATATTCTCCATAAAGTCAAATGGATTC--TCTATTCTGAAAACCTTGCTAAA 113494 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | |||| || | || || || ||||| || ||||||| |||||| | Sbjct 113495 ACCCAGTTCCAGCAT--GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCA 113552 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||| || | || || | || || |||||| || |||||| || Sbjct 113553 ATTCATCCCAATGAGCTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAAC 113612 Query 37109 AGCATCTTTAACTATATTAACAATAACT---TCTTCAGTTGGGGGATATTTTAAATATTT 37165 ||||| || ||| | | | ||| || || | ||| | | || | ||| Sbjct 113613 AGCATTGATAGTTATTT---CTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTT 113669 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 |||| | || ||||||| | |||||||| |||||||| || | | |||| ||| Sbjct 113670 GAACATCAGGCAAGCAAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGA 113729 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 ||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||||| || Sbjct 113730 AAATGTGAGGCCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACC 113789 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT 37345 ||||||| | || ||||| ||||| ||||| ||||||| ||| ||| | || | Sbjct 113790 AGAAAAGTAGATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTC 113849 Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTC 37405 | || |||||| | |||||||||||| || ||||| || ||||| Sbjct 113850 TTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTC 113909 Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 ||| || || |||||||| | |||| | |||| |||| ||||| || || || | Sbjct 113910 AATGGCATTGAAGAGAAATTCCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAG 113969 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 || |||||||||||| || || ||||| || || || || || ||||| ||||| | | Sbjct 113970 ACCATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCC 114029 Query 37526 TTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584 ||| | |||| |||| || | ||| | || | ||||||||||| ||||| |||| Sbjct 114030 TTCTG-TAATCTGAAGTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCAT 114088 Query 37585 CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 |||| ||||||| |||||| ||||| | |||||| | ||| || ||| Sbjct 114089 CACTTGCTGCAAGGAAAGCCAGAACGTGAGATATAAAGTATCTCTCCTCA 114138 >seq630 Length=879232 Score = 192 bits (212), Expect = 7e-44 Identities = 510/768 (66%), Gaps = 27/768 (4%) Strand=Plus/Plus Query 36876 ACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAG 36934 |||||||| | | || || || |||| |||| || || || || |||||||||| || Sbjct 417528 ACTCCCATCCTCTAATGCTCACCTACTC-TCTTCTCAAAGAAGTTAATCTTTCCTTCCAG 417586 Query 36935 TGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACATGAT 36992 || ||||| |||||||| ||||||||||| | || | | | | | ||| | Sbjct 417587 TGGAATATTCTCCATAAAGTCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAAACCC 417644 Query 36993 AATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTT 37052 | |||| || ||| || || || ||||| || ||||||| |||||| | || Sbjct 417645 AGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTC 417704 Query 37053 ATACCAATTAGTTTTACTGGAATTGCATCT---TGAAGAAATAGTTTTTCTATTATTACA 37109 || ||||| || || || || | |||| ||| ||| | | || |||| ||| Sbjct 417705 ATCCCAATGAGCTTCACAGGCAAG--ATCTCAGTGAGGAACTCCTGTT-CTATCCGAACA 417761 Query 37110 GCATCTTTAACTATATTAACAATAACTTCT---TCAGTTGGGGGATATTTTAAATATTTA 37166 |||| ||| ||| | | | || | || | ||| | | || | || Sbjct 417762 GCATTGATAATTATTT---CTCTTTCTCCCGGCTCTGATGGTTTGTGTACTAGGTGTTGG 417818 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 |||| | || ||||||||||| |||||||| |||||||| || | | |||||||||| Sbjct 417819 AACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAA 417878 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || || | || ||||| | |||| ||| |||| ||| ||||| | || ||||| ||| Sbjct 417879 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCA 417938 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 |||||||| | ||||| ||||| ||||| || || ||| | || | Sbjct 417939 GAAAAGAAGACGCCTTCCACTGCAGCAAAGGCA-------GTTCACCATAGGTAGCCTCT 417991 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 | || |||||| | || |||||||| || ||||| || |||||| Sbjct 417992 TTGTCCCCAATCCAGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCA 418051 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 || || || |||||||| | |||| |||| ||||||| || ||| | || | | Sbjct 418052 ATGGCATTGAAGAGAAATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGA 418111 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 |||||||||||||| || || || || || | || || || ||||| ||||| | || Sbjct 418112 CTATACATTTCAGAATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCC 418171 Query 37527 TCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585 || | |||| ||||| || | ||| | || | ||||||||||| ||||| || || Sbjct 418172 TCTG-TAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTC 418230 Query 37586 ACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 ||| |||||||||||| ||||| | |||||| ||||| || || Sbjct 418231 ACTTGCTGCAAAGAAACTCAGAACGTGGGATATAAAGTGTCTCTCCTC 418278 >seq2 Length=18007423 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||||||||| || | || ||||| | |||| ||| || Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCT 1941368 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 1941367 ACGACACGT 1941359 Score = 86.0 bits (94), Expect = 7e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| |||| ||||| ||||| || | ||||||||||||||| || || ||||| || || Sbjct 1939021 ATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1938962 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACATC 37543 || || |||||||| ||||| | ||||| | |||| ||||| || Sbjct 1938961 AATTTGGAAACCATAGAAACAGCGGGCTTCTG-TAATCTGAACTTC 1938917 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 1943248 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 1943190 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 1943189 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 1943156 >seq57 Length=8566406 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || | Sbjct 1418655 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCTGGCATAAGACCTCTCTTCT 1418714 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || ||||||| ||||| || || || || | Sbjct 1418715 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 1418774 Query 37318 CTAC 37321 | || Sbjct 1418775 CCAC 1418778 >seq867 Length=266704 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/151 (74%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 36818 CTTCATTT--TTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATT--ACTATTCA 36873 ||||| || |||| || || |||| || ||||| | | ||| | || ||| || Sbjct 180941 CTTCAGTTCATTTAGAAGTCAGCATCCAAGGTAAAAT--AATTCTCTGTTGGACTTGACA 180884 Query 36874 TAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTA 36933 | |||||||| | ||||| || || |||| |||| || || || ||||||||||| | Sbjct 180883 TCACTCCCATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCA 180824 Query 36934 GTGATATATTTTCCATAAAATCAAATGGATT 36964 |||| ||||| |||||||| ||||||||||| Sbjct 180823 GTGAAATATTCTCCATAAAGTCAAATGGATT 180793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592263817262240