Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq599 304 1e-77 seq13 129 5e-25 seq772 104 2e-17 seq9 104 2e-17 seq17 93.3 3e-14 >seq599 Length=1005688 Score = 304 bits (336), Expect = 1e-77 Identities = 447/626 (71%), Gaps = 9/626 (1%) Strand=Plus/Minus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 ||||||||| |||||| || | || |||||| | ||||| || | | ||||| ||||| Sbjct 754578 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGT 754520 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | || || ||||||| || || ||||| || || || | || || |||| ||| | Sbjct 754519 AAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCG 754460 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | |||| ||||||||| | | |||||||||| |||| || || || || || ||||||| Sbjct 754459 CGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGT 754400 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004 | || || ||||||| ||||| || || ||||| || | | |||| ||||| || | Sbjct 754399 CTCCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCAGA 754340 Query 30005 TGGTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACA 30061 || ||||| ||||| || ||||| |||| ||| ||| | || ||||| ||||||| Sbjct 754339 GGGCATGGCATGGAGGCAGCGCCATCAGAGG---AAGATCTCTTGGATTCCAAGCGCACA 754283 Query 30062 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 30121 |||||| | ||||| || |||||| | ||||| ||| | |||| || || | Sbjct 754282 TGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGTAGTTGGT 754223 Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181 | || || || || || |||| ||| || |||| ||||| || |||||||||| Sbjct 754222 CAACTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCC 754163 Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241 ||||||| || || || || |||| ||| || ||||| ||| ||| ||| | | Sbjct 754162 ACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTAT 754103 Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301 ||| |||||||| ||| || ||||| |||||||| || || ||||| || ||||||| Sbjct 754102 CCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTT 754043 Query 30302 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 30361 | | ||| ||| || ||| || ||||||| |||||||| || ||||||| || | Sbjct 754042 TAG-CTTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACA 753984 Query 30362 C-CCTCTTGGTCGTGAGGAGGGGAAA 30386 | | ||||| || || || ||||| Sbjct 753983 CAACGTTTGGTTGTCAGCAGAGGAAA 753958 >seq13 Length=13416947 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||||||||| || | ||||||||| ||||| || || Sbjct 11482516 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 11482457 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || || |||||||| ||||| || || ||||| |||| | Sbjct 11482456 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 11482397 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || ||||| ||||| || ||||| || Sbjct 11482396 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 11482353 Score = 111 bits (122), Expect = 1e-19 Identities = 129/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 11478307 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 11478248 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| ||| ||| ||| | |||| |||||||| ||| || ||||| || Sbjct 11478247 CCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATC 11478188 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 |||||| || || ||||| || |||||||| | |||||||| || |||| Sbjct 11478187 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 11478136 >seq772 Length=448342 Score = 104 bits (114), Expect = 2e-17 Identities = 182/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 145484 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 145425 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 145424 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 145365 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| | |||||| | | ||| | ||| | || | | || || || | Sbjct 145364 CTGTTTACCTTCTATTGAAGAGGCTGTCGTC-ATTCTCTGGAAATACCTGAATTCATTTC 145306 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 ||| || |||| ||||| ||||| || || ||||| |||||| ||||| || Sbjct 145305 TGAGT------GGTGGCCAGGGCAGGTCTCCCTTCTTGCCGATACCCATGTTCTGG-GAC 145253 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || || || | ||| || Sbjct 145252 ACAGCGACAATGCAGTTTAG 145233 >seq9 Length=13051293 Score = 104 bits (114), Expect = 2e-17 Identities = 182/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || | || || ||||||||||| ||||| || || || || | Sbjct 8822032 ATGAGCTCCTTGTGGAGGTCCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTT 8822091 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| ||| || || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 8822092 TAAAGGTCGATTTTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 8822151 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || || |||||||| || | |||| | ||| | || | | || | || | Sbjct 8822152 CTGTTTATCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATACCTGAATTAATTCC 8822210 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 || || |||| ||||| || || || || | |||||||||| ||||| || Sbjct 8822211 TGAG------CGGCGGCCAGGGCAGGTCACCATTCTTGCTGATGCCCATGTTCTGG-GAC 8822263 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 8822264 ACAGCGACGATGCAGTTTAG 8822283 >seq17 Length=12262279 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || ||||||||||| ||||| || || || || | | ||||| |||||| || || Sbjct 1279978 TTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 1280037 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT 112205 ||||||||||| ||||| |||||||| ||||||| ||||| || Sbjct 1280038 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTT 1280081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408581962926788