Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq599 304 1e-77
seq13 129 5e-25
seq772 104 2e-17
seq9 104 2e-17
seq17 93.3 3e-14
>seq599
Length=1005688
Score = 304 bits (336), Expect = 1e-77
Identities = 447/626 (71%), Gaps = 9/626 (1%)
Strand=Plus/Minus
Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824
||||||||| |||||| || | || |||||| | ||||| || | | ||||| |||||
Sbjct 754578 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGT 754520
Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884
| | || || ||||||| || || ||||| || || || | || || |||| ||| |
Sbjct 754519 AAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCG 754460
Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944
| |||| ||||||||| | | |||||||||| |||| || || || || || |||||||
Sbjct 754459 CGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGT 754400
Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004
| || || ||||||| ||||| || || ||||| || | | |||| ||||| || |
Sbjct 754399 CTCCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCAGA 754340
Query 30005 TGGTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACA 30061
|| ||||| ||||| || ||||| |||| ||| ||| | || ||||| |||||||
Sbjct 754339 GGGCATGGCATGGAGGCAGCGCCATCAGAGG---AAGATCTCTTGGATTCCAAGCGCACA 754283
Query 30062 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 30121
|||||| | ||||| || |||||| | ||||| ||| | |||| || || |
Sbjct 754282 TGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGTAGTTGGT 754223
Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181
| || || || || || |||| ||| || |||| ||||| || ||||||||||
Sbjct 754222 CAACTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCC 754163
Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241
||||||| || || || || |||| ||| || ||||| ||| ||| ||| | |
Sbjct 754162 ACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTAT 754103
Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301
||| |||||||| ||| || ||||| |||||||| || || ||||| || |||||||
Sbjct 754102 CCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTT 754043
Query 30302 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 30361
| | ||| ||| || ||| || ||||||| |||||||| || ||||||| || |
Sbjct 754042 TAG-CTTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACA 753984
Query 30362 C-CCTCTTGGTCGTGAGGAGGGGAAA 30386
| | ||||| || || || |||||
Sbjct 753983 CAACGTTTGGTTGTCAGCAGAGGAAA 753958
>seq13
Length=13416947
Score = 129 bits (142), Expect = 5e-25
Identities = 127/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||||||||||| || | ||||||||| ||||| || ||
Sbjct 11482516 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 11482457
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || |||||||| || || |||||||| ||||| || || ||||| |||| |
Sbjct 11482456 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 11482397
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||| ||||| || | || ||||| ||||| || ||||| ||
Sbjct 11482396 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 11482353
Score = 111 bits (122), Expect = 1e-19
Identities = 129/173 (75%), Gaps = 1/173 (1%)
Strand=Plus/Minus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| ||||| || ||||||||||||||||| || || || || |||| |||
Sbjct 11478307 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 11478248
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
|| ||||| ||| ||| ||| | |||| |||||||| ||| || ||||| ||
Sbjct 11478247 CCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATC 11478188
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322
|||||| || || ||||| || |||||||| | |||||||| || ||||
Sbjct 11478187 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 11478136
>seq772
Length=448342
Score = 104 bits (114), Expect = 2e-17
Identities = 182/260 (70%), Gaps = 10/260 (4%)
Strand=Plus/Minus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| || || || || || || |||||||| |||| || || || || |
Sbjct 145484 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 145425
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 145424 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 145365
Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258
||| || ||| | |||||| | | ||| | ||| | || | | || || || |
Sbjct 145364 CTGTTTACCTTCTATTGAAGAGGCTGTCGTC-ATTCTCTGGAAATACCTGAATTCATTTC 145306
Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317
||| || |||| ||||| ||||| || || ||||| |||||| ||||| ||
Sbjct 145305 TGAGT------GGTGGCCAGGGCAGGTCTCCCTTCTTGCCGATACCCATGTTCTGG-GAC 145253
Query 112318 ACGGCCACGATACCGTTCAG 112337
|| || || || | ||| ||
Sbjct 145252 ACAGCGACAATGCAGTTTAG 145233
>seq9
Length=13051293
Score = 104 bits (114), Expect = 2e-17
Identities = 182/260 (70%), Gaps = 10/260 (4%)
Strand=Plus/Plus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| || || | || || ||||||||||| ||||| || || || || |
Sbjct 8822032 ATGAGCTCCTTGTGGAGGTCCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTT 8822091
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| ||||| ||| || || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 8822092 TAAAGGTCGATTTTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 8822151
Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258
||| || || |||||||| || | |||| | ||| | || | | || | || |
Sbjct 8822152 CTGTTTATCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATACCTGAATTAATTCC 8822210
Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317
|| || |||| ||||| || || || || | |||||||||| ||||| ||
Sbjct 8822211 TGAG------CGGCGGCCAGGGCAGGTCACCATTCTTGCTGATGCCCATGTTCTGG-GAC 8822263
Query 112318 ACGGCCACGATACCGTTCAG 112337
|| || ||||| | ||| ||
Sbjct 8822264 ACAGCGACGATGCAGTTTAG 8822283
>seq17
Length=12262279
Score = 93.3 bits (102), Expect = 3e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || ||||||||||| ||||| || || || || | | ||||| |||||| || ||
Sbjct 1279978 TTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 1280037
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT 112205
||||||||||| ||||| |||||||| ||||||| ||||| ||
Sbjct 1280038 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTT 1280081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408581962926788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |