Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq683 109 4e-19 seq69 107 2e-18 seq407 105 5e-18 seq290 98.7 8e-16 seq38 96.9 3e-15 seq19 95.1 1e-14 seq6 93.3 3e-14 seq487 87.8 1e-12 seq136 86.0 5e-12 seq1 82.4 6e-11 >seq683 Length=714717 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | || || | | |||| |||| | Sbjct 111400 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATCCTCCAGCTAT 111459 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| |||||||||| |||||| ||||| || || || || || || ||||||||||| Sbjct 111460 TTACCGGCAAATATCAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGAATTTTG 111519 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| | || || ||||| |||| || ||||| | Sbjct 111520 GCTTTAACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCATG 111579 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 111580 AGGGTCTTCACAAAGATCTGCAT 111602 >seq69 Length=11786368 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||| ||||| || || || || ||||| || | | ||| | |||| Sbjct 9297222 AACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACCTCCATCT 9297163 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||||| || ||||| |||| | || ||||| || ||||||||||| |||||| Sbjct 9297162 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATGCCTTCCTTATCT 9297103 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| ||||| ||| || | | ||| || || || ||| || Sbjct 9297102 TGGATCTTGGCCTTTACATTTTCTGTAGTATCCAAGGGTTCAACCTCGAGGTTGATGGTC 9297043 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||||| || || |||||||| Sbjct 9297042 TTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 9297011 >seq407 Length=3256691 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | || || | | |||| |||| ||| Sbjct 904243 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATCCTCCAGCTGC 904302 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 | | |||||||||| |||||| || || || || || || || || ||||||||||| Sbjct 904303 TGGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTG 904362 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| | || || ||||| |||| || ||||| || Sbjct 904363 GCTTTGACATTCTCAATGGTGTCATTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTG 904422 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 904423 AGGGTCTTCACAAAGATCTGCAT 904445 >seq290 Length=2922102 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||| |||| || ||||| || ||||| || | | ||| | |||| Sbjct 1757556 AACACAAGATGAAGAATAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCT 1757615 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||||| || ||||| |||| | || ||||| ||||| ||||||||||| Sbjct 1757616 TCCAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCACAAGGAATTCCTTCTTTATCC 1757675 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| |||||| || || || | ||| | || || |||| || Sbjct 1757676 TGGATCTTGGACTTTACATTTTCTATCGTATCCGAAGGTTCAGCCTCGAGGGTGATGGTC 1757735 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | | ||||| ||||| |||||||| Sbjct 1757736 TTCCCCATAAGGGTTTTCACAAAAATCTGCAT 1757767 >seq38 Length=10264441 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | || || | |||| |||| || Sbjct 9540848 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTGTGGCCATCCTCCAGCTGT 9540789 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || |||||||||| |||||| || || || || || || || || ||||||||||| Sbjct 9540788 TTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTG 9540729 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| | || || ||||| |||| || ||||| | Sbjct 9540728 GCTTTGACATTCTCAATGGTGTCA-CGGGCTCGACCTCAAGGGTGATGGTCTTGCCCATG 9540670 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 9540669 AGGGTCTTCACAAAGATCTGCAT 9540647 >seq19 Length=20362211 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||| ||| | || ||||| || ||||| || | | ||| | | || Sbjct 6160556 AACACAAGATGAAGAGTAAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCGTCT 6160497 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||||| || ||||| |||| | || ||||| || ||||| ||||||||||| Sbjct 6160496 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCC 6160437 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| |||||| | || || ||||| | ||||| |||| || Sbjct 6160436 TGGATCTTGGCCTTTACATTTTCTATTATATCCGAGGTTTCAAACTCAAGGGTGATGGTC 6160377 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | | | | ||||| | ||| |||||||| Sbjct 6160376 TCCCTCATAAGGGTTTTCAGAAAAATCTGCAT 6160345 >seq6 Length=15684572 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || ||||| | || ||||| || | || | | | | |||| |||| || Sbjct 13057142 ATGCAGGGTGGACTCTTTCTAGATGTTGTAGTCTGAGAGACTGCAGCCATCCTCCAGCTG 13057083 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| |||| || ||| || || || | || || || || ||||||||||| Sbjct 13057082 TTTGCCGGCAAACATCAGACACTGCTGGTCAGGTGTGATACCCTCCTTGTCTTGAATTTT 13057023 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | ||||| || || || ||||| |||| || ||||| || Sbjct 13057022 GGCTTTGACATTCTCAATGGTGTCCCCAGTCTCGACCTCAAGGGTGATGGTCTTGCCCGT 13056963 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||| || ||||| |||| ||| Sbjct 13056962 GAGAGTCTTCACAAAGATCTACAT 13056939 >seq487 Length=2137387 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | || || | | |||| |||| || Sbjct 1405245 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATCCTCCAGCTGT 1405304 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 | || |||||||||| || ||| || || || || || || | || ||||||||||| Sbjct 1405305 TGGCCGGCAAATATCAGACACTGCTGGTCAGGTGGGATACCCACCTTGTCTTGAATTTTG 1405364 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| | || || ||||| |||| || || || || Sbjct 1405365 GATTTAACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTACCCGTG 1405424 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||| | |||||||| Sbjct 1405425 AGGGTCTTCACAGAGATCTGCAT 1405447 >seq136 Length=5279821 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG-TCCAATTG 101325 || ||||| || ||||| || || | ||| || | || ||| |||| | |||| || Sbjct 2782408 TGCAGGGTGGACTCTTTCTGGATGTCGTAGTCAGAGAGAGTG-TGGCTAGGCTCCAGCTG 2782350 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || |||||||||| |||||| || || || | || || || || ||||||||||| Sbjct 2782349 TTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTTGGATACCCTCCTTCTCTTGAATTTT 2782290 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || |||||| | || || | |||||||| || ||||| | Sbjct 2782289 GGCTTTGACATTCTCAGTGGTGTCATTGGACTCGACCTAAAGAGTGATGGTCTTGCCCAT 2782230 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 2782229 GAGGGTTTTCACAAAGATCTGCAT 2782206 >seq1 Length=21314971 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||| | || ||||| || || ||||| || | || || | | |||| |||| || Sbjct 4712567 TGCAGGTTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTGCAGCCATCCTCCAGCTGT 4712508 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| |||||| || || || || || | || || ||||||||||| Sbjct 4712507 TTGCCGGCAAACATCAGACGCTGCTGGTCAGGTGGGATAGCCTCCTTGTCTTGAATTTTG 4712448 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || |||||| | || || ||||| |||| || ||||| | Sbjct 4712447 GCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCATG 4712388 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| ||||| || Sbjct 4712387 AGGGTCTTCACAAAGATCTGTAT 4712365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396243839074692