Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq235 187 5e-42
seq281 145 1e-29
seq526 140 6e-28
seq630 138 2e-27
seq164 93.3 8e-14
seq80 91.5 3e-13
>seq235
Length=3490875
Score = 187 bits (206), Expect = 5e-42
Identities = 187/243 (77%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| |||||||||| | || | ||| || ||||| |||||||| |||||||||||
Sbjct 1738689 AGCAGCTGACAGCCGTTGCTGACGTGGGTCATGACCTTTTGTTTGAGCTGGGCCACCTGC 1738748
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
||||| || | | |||||| | ||||| || ||||| || | ||||||| ||||||
Sbjct 1738749 TCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 1738808
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| |||||||| |||||||| || ||||| || ||| ||||| |||||||| ||||
Sbjct 1738809 TTGTCCTCCAGGCGCGCGATCCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 1738868
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
|||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| ||
Sbjct 1738869 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGGGG 1738928
Query 241625 GAC 241627
|||
Sbjct 1738929 GAC 1738931
>seq281
Length=3970088
Score = 145 bits (160), Expect = 1e-29
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||| | ||| ||||| || |||||||| || ||||| | | ||| || | |||
Sbjct 2248020 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 2248079
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | |||||| |||||||||||||||||| |||| |||||| |||||
Sbjct 2248080 TCCGTGTTCTGGCTCTTGAGGGTCTTCACTTTCTCCTCCAGGCGCGAGATGCGCTCCAGC 2248139
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|||||| |||||| |||| ||| || | |||||| || || | ||| || |||||||||
Sbjct 2248140 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 2248199
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| ||||||||||| || |||
Sbjct 2248200 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 2248232
>seq526
Length=1402496
Score = 140 bits (154), Expect = 6e-28
Identities = 361/541 (67%), Gaps = 13/541 (2%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||| || || || ||||| |||||||||||||| ||||| || |||| || || |||||
Sbjct 113393 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 113452
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956
||| ||| || || || | | || | | | || || | | |||| ||||||||
Sbjct 113453 CATAAAGTCAAATGGATTC--TCTATTCTGAAAACCTTGCTAAAACCCA---GTTCCAGC 113507
Query 47957 AGGTGA-TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015
| || || || || |||| ||||||| ||| || ||| ||||| || |||||
Sbjct 113508 ATGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAG 113567
Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075
||| ||||| |||| || |||||||| | |||||| | || || | ||
Sbjct 113568 CTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCATTGATAGTTAT 113627
Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135
| | || | |||||| ||||||| ||||| ||| | | || ||| ||
Sbjct 113628 TTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGA---ACATCAGGCAAGC 113684
Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195
||| | ||| || || || || | ||| | || | | || || ||| |||||
Sbjct 113685 AAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGG 113744
Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255
||| | || | | ||||||||||| || | || ||||| ||||| ||| |||||||
Sbjct 113745 CATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCC 113804
Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315
|||||||| || || || | | || || | | ||| | ||||| |||||
Sbjct 113805 TTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 113864
Query 48316 G-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374
| | ||| ||||| ||||||||||| |||| || |||||||| || ||||| |||||
Sbjct 113865 GCGCAAG-GCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGA 113923
Query 48375 G 48375
|
Sbjct 113924 G 113924
>seq630
Length=879232
Score = 138 bits (152), Expect = 2e-27
Identities = 532/823 (65%), Gaps = 32/823 (4%)
Strand=Plus/Plus
Query 47846 TCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAG 47905
|| || ||||| |||||||||||||| |||| || |||| | || |||||||| |||
Sbjct 417546 TCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAATATTCTCCATAAAG 417605
Query 47906 AGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGCAGGTGA- 47962
|| || || | | | | | | || || | | |||| ||||||||| |
Sbjct 417606 TCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAAACCCA---GTTCCAGCATAAGTC 417660
Query 47963 --TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACA 48020
|| || || |||| ||||||| ||| || ||| ||||| || ||||| ||
Sbjct 417661 TGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCA 417720
Query 48021 CGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT--CTG 48078
| ||||| || ||||| ||||||| |||||| | || || | | || ||
Sbjct 417721 CAGGCAAGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTC 417780
Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138
|| | ||| |||||| ||||||| ||||| |||| | | || ||| |||||
Sbjct 417781 TTTCTCCCGG--CTCTGATGGTTTGTGTACTAGGTG-TTGGAACAT--CAGGCAAGCAAA 417835
Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198
|| | ||| || || || || | ||| | || | || || || ||| ||||||||
Sbjct 417836 ATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCAT 417895
Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258
| || | | || |||||||| || | || ||||| ||||| ||||||| ||| ||
Sbjct 417896 CAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTC 417955
Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-G 48317
|||||| || || || || || || | | ||| | ||||| |||||| |
Sbjct 417956 CACTGCAGCAAAGGCAGT-------TCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCG 418008
Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT 48377
||| |||| ||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct 418009 CAAG-GCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAA 418067
Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAG 48434
| | || | | || | ||| || ||| || || | ||||| ||||
Sbjct 418068 ATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACT---ATACATTTCAG 418124
Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494
| || | || || || | || ||||| || ||||| | |||||| | ||| |
Sbjct 418125 AATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAA 418184
Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554
||||| | |||| ||||| || || ||||| ||||| || || || |||||||
Sbjct 418185 CTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGA 418244
Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614
| || || || | || || | ||| | | | | || | | |||| | | |
Sbjct 418245 AACTCAGAACGTGGGATATAAAGTGTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGAA 418304
Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657
||| ||| | ||||||| ||||| | ||||| ||||| ||
Sbjct 418305 TGTCCTTGGACGGGTCCACCTCTTCGGCGGTCCAAAAGGAGGC 418347
>seq164
Length=5605536
Score = 93.3 bits (102), Expect = 8e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 4047105 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 4047164
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || |||||| ||||||||||
Sbjct 4047165 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 4047224
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 4047225 ATGGGGGAC 4047233
>seq80
Length=8459403
Score = 91.5 bits (100), Expect = 3e-13
Identities = 96/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||| | || || |||||||||||||||||| |||||| ||||||||||| |||
Sbjct 1287414 GTGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 1287473
Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646
||| || || | || ||||| || |||||||| || |||| || |||||| |||
Sbjct 1287474 -TTGCTCTTCCGATTACAGGAATCTTTATAGAGCATATACGGGGTACCTGTCTCTGTCTG 1287532
Query 213647 GGAC 213650
|||
Sbjct 1287533 AGAC 1287536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931449474391040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |