Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq235 187 5e-42 seq281 145 1e-29 seq526 140 6e-28 seq630 138 2e-27 seq164 93.3 8e-14 seq80 91.5 3e-13 >seq235 Length=3490875 Score = 187 bits (206), Expect = 5e-42 Identities = 187/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||||||||| | || | ||| || ||||| |||||||| ||||||||||| Sbjct 1738689 AGCAGCTGACAGCCGTTGCTGACGTGGGTCATGACCTTTTGTTTGAGCTGGGCCACCTGC 1738748 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | |||||| | ||||| || ||||| || | ||||||| |||||| Sbjct 1738749 TCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 1738808 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| |||||||| || ||||| || ||| ||||| |||||||| |||| Sbjct 1738809 TTGTCCTCCAGGCGCGCGATCCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 1738868 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| || Sbjct 1738869 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGGGG 1738928 Query 241625 GAC 241627 ||| Sbjct 1738929 GAC 1738931 >seq281 Length=3970088 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 2248020 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 2248079 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||||||||||||||| |||| |||||| ||||| Sbjct 2248080 TCCGTGTTCTGGCTCTTGAGGGTCTTCACTTTCTCCTCCAGGCGCGAGATGCGCTCCAGC 2248139 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 2248140 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 2248199 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 2248200 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 2248232 >seq526 Length=1402496 Score = 140 bits (154), Expect = 6e-28 Identities = 361/541 (67%), Gaps = 13/541 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||||||||||| ||||| || |||| || || ||||| Sbjct 113393 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 113452 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||| ||| || || || | | || | | | || || | | |||| |||||||| Sbjct 113453 CATAAAGTCAAATGGATTC--TCTATTCTGAAAACCTTGCTAAAACCCA---GTTCCAGC 113507 Query 47957 AGGTGA-TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 | || || || || |||| ||||||| ||| || ||| ||||| || ||||| Sbjct 113508 ATGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAG 113567 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 ||| ||||| |||| || |||||||| | |||||| | || || | || Sbjct 113568 CTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCATTGATAGTTAT 113627 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | | || | |||||| ||||||| ||||| ||| | | || ||| || Sbjct 113628 TTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGA---ACATCAGGCAAGC 113684 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||| | ||| || || || || | ||| | || | | || || ||| ||||| Sbjct 113685 AAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGG 113744 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | | ||||||||||| || | || ||||| ||||| ||| ||||||| Sbjct 113745 CATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCC 113804 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 |||||||| || || || | | || || | | ||| | ||||| ||||| Sbjct 113805 TTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 113864 Query 48316 G-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | | ||| ||||| ||||||||||| |||| || |||||||| || ||||| ||||| Sbjct 113865 GCGCAAG-GCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGA 113923 Query 48375 G 48375 | Sbjct 113924 G 113924 >seq630 Length=879232 Score = 138 bits (152), Expect = 2e-27 Identities = 532/823 (65%), Gaps = 32/823 (4%) Strand=Plus/Plus Query 47846 TCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAG 47905 || || ||||| |||||||||||||| |||| || |||| | || |||||||| ||| Sbjct 417546 TCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAATATTCTCCATAAAG 417605 Query 47906 AGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGCAGGTGA- 47962 || || || | | | | | | || || | | |||| ||||||||| | Sbjct 417606 TCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAAACCCA---GTTCCAGCATAAGTC 417660 Query 47963 --TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACA 48020 || || || |||| ||||||| ||| || ||| ||||| || ||||| || Sbjct 417661 TGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCA 417720 Query 48021 CGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT--CTG 48078 | ||||| || ||||| ||||||| |||||| | || || | | || || Sbjct 417721 CAGGCAAGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTC 417780 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 || | ||| |||||| ||||||| ||||| |||| | | || ||| ||||| Sbjct 417781 TTTCTCCCGG--CTCTGATGGTTTGTGTACTAGGTG-TTGGAACAT--CAGGCAAGCAAA 417835 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 || | ||| || || || || | ||| | || | || || || ||| |||||||| Sbjct 417836 ATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCAT 417895 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 | || | | || |||||||| || | || ||||| ||||| ||||||| ||| || Sbjct 417896 CAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTC 417955 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-G 48317 |||||| || || || || || || | | ||| | ||||| |||||| | Sbjct 417956 CACTGCAGCAAAGGCAGT-------TCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCG 418008 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT 48377 ||| |||| ||||||||||||||||| || |||||||| || ||||| |||||| Sbjct 418009 CAAG-GCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAA 418067 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAG 48434 | | || | | || | ||| || ||| || || | ||||| |||| Sbjct 418068 ATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACT---ATACATTTCAG 418124 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 | || | || || || | || ||||| || ||||| | |||||| | ||| | Sbjct 418125 AATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAA 418184 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 ||||| | |||| ||||| || || ||||| ||||| || || || ||||||| Sbjct 418185 CTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGA 418244 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614 | || || || | || || | ||| | | | | || | | |||| | | | Sbjct 418245 AACTCAGAACGTGGGATATAAAGTGTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGAA 418304 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 ||| ||| | ||||||| ||||| | ||||| ||||| || Sbjct 418305 TGTCCTTGGACGGGTCCACCTCTTCGGCGGTCCAAAAGGAGGC 418347 >seq164 Length=5605536 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 4047105 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 4047164 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 4047165 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 4047224 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 4047225 ATGGGGGAC 4047233 >seq80 Length=8459403 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 1287414 GTGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 1287473 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| || |||||||| || |||| || |||||| ||| Sbjct 1287474 -TTGCTCTTCCGATTACAGGAATCTTTATAGAGCATATACGGGGTACCTGTCTCTGTCTG 1287532 Query 213647 GGAC 213650 ||| Sbjct 1287533 AGAC 1287536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931449474391040