Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq526 140 6e-28
seq630 95.1 2e-14
>seq526
Length=1402496
Score = 140 bits (154), Expect = 6e-28
Identities = 555/862 (64%), Gaps = 39/862 (5%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| ||||| | |||||||| | ||| ||||| ||| || ||| | || |||
Sbjct 114233 ATCTGGCAGATGCATAAGAAGGCGGACGCCTCCTTCTGGAGCGCTGAGGAGGTAGACCTG 114174
Query 25537 GCCAAGGACATGGACGGC--TGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCAA 25592
|||||||||| ||||| ||| | | || | || || ||| | || | ||
Sbjct 114173 TCCAAGGACAT--ACGGCACTGGGAATCCCTGAAGCCTGAGGAGAGATACTTTATATCTC 114116
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
|||| |||| ||| ||||||| |||||| ||||| || || || || ||| |
Sbjct 114115 --ACGTTCTGGCTTTCCTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCG 114058
Query 25653 ATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710
||| | | ||| | ||| ||| || | | |||||||| || ||||| || |||
Sbjct 114057 ATTTAGCCAAGAACTTCAGATTACA--GAAGGCTGCTGTTTCTATGGCTTCCAAATTGCC 114000
Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTC 25770
|| ||||| | || ||||| |||||| ||| | || ||||| | ||| |
Sbjct 113999 ATGGAAAACATACATTCTGAAATGTATGGTCTCCTTATCGACACTTACATAAAAGATCCC 113940
Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830
|| || || || || |||||| || || || | |||| | ||||||
Sbjct 113939 AATGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAACAAGAAGGCA 113880
Query 25831 CGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887
|||||| || ||||| ||| |||| ||||| | ||| || || | |||
Sbjct 113879 GATTGGGCCTTGCGCTGGATTGGGGACAA--AGAG-GCTACCTATGGTGAACGCGTTGTA 113823
Query 25888 GCCTTTGCTGCTGTGGAGGGCATCT--TTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGC 25945
||||||||||| ||||| ||||||| ||||| | |||| ||||| |||| |||||||
Sbjct 113822 GCCTTTGCTGCAGTGGAAGGCATCTACTTTTCTG--GTTCTTTTGCATCCATATTCTGGC 113765
Query 25946 TCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004
||||| | | | |||| ||||| || || ||||| | || || | ||||| ||
Sbjct 113764 TCAAG-AAATGAGGACTGATGCCTGGCCTCACATTTTCTCATGACCTTTTTAGCAGAGAT 113706
Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT 26064
|||||| | ||| | ||||||| |||||| | | || ||| | | ||||||||
Sbjct 113705 GAGGGTTTACACTCACATTTTGCTTGCCTGATGTTCA---AACACCTAGTACACAAACCA 113649
Query 26065 TCTCAAGAGACCGTCTACAG---TATC-ATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120
|| | |||| || | || || | |||| | ||||| ||| || | |||||
Sbjct 113648 TCAGAGGAGAGAGT-AAGAGAAATAACTATCA---ATGCTGTTCGGATAGAACAAGAGTT 113593
Query 26121 TCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATA 26180
|| | || ||||| || || |||| |||||
Sbjct 113592 TCTTACTGAGGCCTTGCCTGTGGAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATA 113533
Query 26181 CATTGAGTATGTGGCCGAC-CATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTA 26239
|||||||| |||||| ||| | ||||| | ||||| | || | | ||| |
Sbjct 113532 CATTGAGTTTGTGGCAGACAGACATGCTG---GAACTGGGTTTTAGCAAGGTTTTCAGAA 113476
Query 26240 CGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299
|| || || ||||||||||| || || || ||||||| ||||| ||||||||||
Sbjct 113475 TAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTG 113416
Query 26300 AAAAGAGGGTCGGCGACTATCA 26321
| ||||| || ||||| |||||
Sbjct 113415 AGAAGAGAGTAGGCGAGTATCA 113394
>seq630
Length=879232
Score = 95.1 bits (104), Expect = 2e-14
Identities = 349/533 (65%), Gaps = 29/533 (5%)
Strand=Plus/Minus
Query 25513 TGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGC--TGGTACGCTCT--ATC 25568
||||||||||||||| | || | | |||||||||| |||| ||| | | || | |
Sbjct 418338 TGGACCGCCGAAGAGGTGGACCCGTCCAAGGACATT--CGGCACTGGGAATCCCTGAAGC 418281
Query 25569 CAAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTAT 25628
| || ||| | || | || |||| || ||||||||||| ||| || ||
Sbjct 418280 CCGAGGAGAGACACTTTATATCCC--ACGTTCTGAGTTTCTTTGCAGCAAGTGACGGCAT 418223
Query 25629 AGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAG 25686
||| || || || || ||| |||| | | ||||| ||| ||| ||||||
Sbjct 418222 AGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTACA--GAGGCCCGC 418165
Query 25687 TGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTT 25746
|||||||| || ||||| || | ||| || || | || ||||| ||||| |||
Sbjct 418164 TGTTTCTATGGATTCCAAATTGGCATGGACAACATACATTCTGAAATGTATAGTCTCCTT 418105
Query 25747 -CTGATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCA 25805
|||| ||||| || | ||| | ||| || || || || |||||| ||
Sbjct 418104 ACTGAC-ACGTATATAAAAGATCCCAGCGAAAGGGAATTTCTCTTCAATGCCATTGAAAC 418046
Query 25806 CATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAG 25862
|| || | |||||| |||||| ||||| || ||||| ||| ||||
Sbjct 418045 GATGCCTTGTGTCAAGAAGAAGGCAGACCGGGCCTTGCGCTGGATTGGGGACAA--AGAG 417988
Query 25863 CGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG 25922
||||| | ||| || | || ||||||||| ||||| ||| |||| || ||
Sbjct 417987 -GCTACCTATGGTGAACTGC-------CTTTGCTGCAGTGGAAGGCGTCTTCTTTTCTGG 417936
Query 25923 TTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTT 25981
||| || || |||| |||||||| ||| | | | |||| ||||| || || ||||
Sbjct 417935 TTCTTTAGCTTCCATATTCTGGCTTAAG-AAACGAGGACTGATGCCTGGCCTCACATTTT 417877
Query 25982 CCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034
| || || || | ||||| || |||||| | ||| | |||||||| ||||||
Sbjct 417876 CTAATGAACTTTTTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTG 417824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928761714832640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |