Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq526 140 6e-28 seq630 95.1 2e-14 >seq526 Length=1402496 Score = 140 bits (154), Expect = 6e-28 Identities = 555/862 (64%), Gaps = 39/862 (5%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||| | |||||||| | ||| ||||| ||| || ||| | || ||| Sbjct 114233 ATCTGGCAGATGCATAAGAAGGCGGACGCCTCCTTCTGGAGCGCTGAGGAGGTAGACCTG 114174 Query 25537 GCCAAGGACATGGACGGC--TGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCAA 25592 |||||||||| ||||| ||| | | || | || || ||| | || | || Sbjct 114173 TCCAAGGACAT--ACGGCACTGGGAATCCCTGAAGCCTGAGGAGAGATACTTTATATCTC 114116 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| |||| ||| ||||||| |||||| ||||| || || || || ||| | Sbjct 114115 --ACGTTCTGGCTTTCCTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCG 114058 Query 25653 ATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 ||| | | ||| | ||| ||| || | | |||||||| || ||||| || ||| Sbjct 114057 ATTTAGCCAAGAACTTCAGATTACA--GAAGGCTGCTGTTTCTATGGCTTCCAAATTGCC 114000 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTC 25770 || ||||| | || ||||| |||||| ||| | || ||||| | ||| | Sbjct 113999 ATGGAAAACATACATTCTGAAATGTATGGTCTCCTTATCGACACTTACATAAAAGATCCC 113940 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 || || || || || |||||| || || || | |||| | |||||| Sbjct 113939 AATGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAACAAGAAGGCA 113880 Query 25831 CGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 |||||| || ||||| ||| |||| ||||| | ||| || || | ||| Sbjct 113879 GATTGGGCCTTGCGCTGGATTGGGGACAA--AGAG-GCTACCTATGGTGAACGCGTTGTA 113823 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCT--TTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGC 25945 ||||||||||| ||||| ||||||| ||||| | |||| ||||| |||| ||||||| Sbjct 113822 GCCTTTGCTGCAGTGGAAGGCATCTACTTTTCTG--GTTCTTTTGCATCCATATTCTGGC 113765 Query 25946 TCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 ||||| | | | |||| ||||| || || ||||| | || || | ||||| || Sbjct 113764 TCAAG-AAATGAGGACTGATGCCTGGCCTCACATTTTCTCATGACCTTTTTAGCAGAGAT 113706 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT 26064 |||||| | ||| | ||||||| |||||| | | || ||| | | |||||||| Sbjct 113705 GAGGGTTTACACTCACATTTTGCTTGCCTGATGTTCA---AACACCTAGTACACAAACCA 113649 Query 26065 TCTCAAGAGACCGTCTACAG---TATC-ATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 || | |||| || | || || | |||| | ||||| ||| || | ||||| Sbjct 113648 TCAGAGGAGAGAGT-AAGAGAAATAACTATCA---ATGCTGTTCGGATAGAACAAGAGTT 113593 Query 26121 TCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATA 26180 || | || ||||| || || |||| ||||| Sbjct 113592 TCTTACTGAGGCCTTGCCTGTGGAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATA 113533 Query 26181 CATTGAGTATGTGGCCGAC-CATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTA 26239 |||||||| |||||| ||| | ||||| | ||||| | || | | ||| | Sbjct 113532 CATTGAGTTTGTGGCAGACAGACATGCTG---GAACTGGGTTTTAGCAAGGTTTTCAGAA 113476 Query 26240 CGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299 || || || ||||||||||| || || || ||||||| ||||| |||||||||| Sbjct 113475 TAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTG 113416 Query 26300 AAAAGAGGGTCGGCGACTATCA 26321 | ||||| || ||||| ||||| Sbjct 113415 AGAAGAGAGTAGGCGAGTATCA 113394 >seq630 Length=879232 Score = 95.1 bits (104), Expect = 2e-14 Identities = 349/533 (65%), Gaps = 29/533 (5%) Strand=Plus/Minus Query 25513 TGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGC--TGGTACGCTCT--ATC 25568 ||||||||||||||| | || | | |||||||||| |||| ||| | | || | | Sbjct 418338 TGGACCGCCGAAGAGGTGGACCCGTCCAAGGACATT--CGGCACTGGGAATCCCTGAAGC 418281 Query 25569 CAAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTAT 25628 | || ||| | || | || |||| || ||||||||||| ||| || || Sbjct 418280 CCGAGGAGAGACACTTTATATCCC--ACGTTCTGAGTTTCTTTGCAGCAAGTGACGGCAT 418223 Query 25629 AGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAG 25686 ||| || || || || ||| |||| | | ||||| ||| ||| |||||| Sbjct 418222 AGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTACA--GAGGCCCGC 418165 Query 25687 TGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTT 25746 |||||||| || ||||| || | ||| || || | || ||||| ||||| ||| Sbjct 418164 TGTTTCTATGGATTCCAAATTGGCATGGACAACATACATTCTGAAATGTATAGTCTCCTT 418105 Query 25747 -CTGATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCA 25805 |||| ||||| || | ||| | ||| || || || || |||||| || Sbjct 418104 ACTGAC-ACGTATATAAAAGATCCCAGCGAAAGGGAATTTCTCTTCAATGCCATTGAAAC 418046 Query 25806 CATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAG 25862 || || | |||||| |||||| ||||| || ||||| ||| |||| Sbjct 418045 GATGCCTTGTGTCAAGAAGAAGGCAGACCGGGCCTTGCGCTGGATTGGGGACAA--AGAG 417988 Query 25863 CGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG 25922 ||||| | ||| || | || ||||||||| ||||| ||| |||| || || Sbjct 417987 -GCTACCTATGGTGAACTGC-------CTTTGCTGCAGTGGAAGGCGTCTTCTTTTCTGG 417936 Query 25923 TTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTT 25981 ||| || || |||| |||||||| ||| | | | |||| ||||| || || |||| Sbjct 417935 TTCTTTAGCTTCCATATTCTGGCTTAAG-AAACGAGGACTGATGCCTGGCCTCACATTTT 417877 Query 25982 CCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 | || || || | ||||| || |||||| | ||| | |||||||| |||||| Sbjct 417876 CTAATGAACTTTTTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTG 417824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928761714832640