Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq151 334 9e-87
seq465 250 3e-61
seq202 163 3e-35
>seq151
Length=5769222
Score = 334 bits (370), Expect = 9e-87
Identities = 673/990 (68%), Gaps = 11/990 (1%)
Strand=Plus/Minus
Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106
|||| |||||| || |||| ||| |||| ||| || | |||||| || ||| || |||
Sbjct 2474348 TGTCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCATGTCAAACTTA 2474289
Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166
|| || |||| || || || | || ||||||| || ||| || | ||||| | |
Sbjct 2474288 TTGGCAAACAAGTGATGC---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAAATG 2474232
Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226
|| || || || | |||||| |||| ||| || ||||| |||| || || | || |||
Sbjct 2474231 CACACCGAGCGCACGTGCACCCCGTCGCAGGGTGGGTAGGGAGCACCCTTGGAAACATCA 2474172
Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286
|| || ||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct 2474171 CCCTCAAAGTACTGCCACTTGACAAACCTGGCAATCGCCTGCATGTCAGACAAATCGTAC 2474112
Query 160287 TTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344
|| | | ||| | || |||||| | | || || | ||| | ||| ||||| |
Sbjct 2474111 TTATGGCTGGCAGAGAGTGAGC-CCGGGA-CTTCAGGAATCCTCTGGATGGTAGCCCAGA 2474054
Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404
| | || || ||||| || ||||| | | ||| ||||| |||| | |||| |
Sbjct 2474053 GATACTCATCAGGGCTATATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTCAT 2473994
Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464
| | || || | || || || | || |||||||| || ||||| || || |
Sbjct 2473993 TCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAAAA 2473934
Query 160465 TCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCA 160524
| ||| | | | || || |||| | || ||||| | || | ||| || |
Sbjct 2473933 TGGGTGTTGCCAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAACTTTCCATTAA 2473874
Query 160525 CCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTA 160584
| | | | ||||| |||||||| | || | | |||||| | ||||| || |
Sbjct 2473873 TGACCTCATACCGCTTTTTCCACCTTTCTTCTTTATTGGATGGCATCCTCTCCGTTTCCA 2473814
Query 160585 GACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644
| |||| | || | | | || |||| | |||| || |||||||| || || | |
Sbjct 2473813 GGTTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAATAG 2473754
Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704
|||| || |||| || | ||||||| ||||||||| ||||| |||| ||| ||||
Sbjct 2473753 GAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTCGCCCTCATTGCGTAGAGGT 2473694
Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764
|| ||||||| || | || ||||| || |||||||| || || || || || |||| |
Sbjct 2473693 CCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTCCA 2473634
Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAA 160822
| |||||||| ||||| ||| |||||| || | || |||| ||| || || |||
Sbjct 2473633 ATCGGCTGGCCACGAAGACATTACTGAAACAGGATGCAATGCCCATCACTGC-AGCTAAA 2473575
Query 160823 GAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882
| | | || | ||| |||||| || | ||||| | ||||||||| |||||
Sbjct 2473574 TAGGAA-TCCTCGGATTTTTTGTCCACATGAATACAATAGAAATTCTGAGGCATATAGAT 2473516
Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942
|||||| || | ||| || | ||| || ||||| ||||| | ||||||||| || |||||
Sbjct 2473515 GGCCCTCAGTAGCCTGTCAAGCATTTCGATCTTGTGATGAACCACGATAGAATACGCTAT 2473456
Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002
|||||||| | ||| || ||| |||| | | | || || ||| ||||||| ||
Sbjct 2473455 TGGAAACTCTGCCTCTTCTTTACTAAGGGGCTCTACAATATATTTGCGCCTCTTGATGAA 2473396
Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032
| ||| ||| || | |||||||| |||||
Sbjct 2473395 AGAATTACAGTCACTGGTCATGTTTATATA 2473366
>seq465
Length=1645510
Score = 250 bits (276), Expect = 3e-61
Identities = 651/977 (67%), Gaps = 32/977 (3%)
Strand=Plus/Minus
Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTC--GTCGAATT 160104
|||| |||||| || |||| ||| |||| ||| || | ||||| | ||| ||| || |
Sbjct 1459766 TGTCTCAGATGCTCCTCCAAACACTGGATGGCAAAGAGGTCAA--TATTCATGTCAAACT 1459709
Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164
|||| || ||| ||||| || | || ||||||| || ||| || | ||||| |
Sbjct 1459708 TATTGGCAGACAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCGCCAGCTCCGAAAA 1459652
Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224
||| || || || | | |||| ||| ||| | ||||| |||| || || | || |
Sbjct 1459651 TGCACACCGAGCGCACGAGCACCCCGCCGCACAGTGGGTAGGGAGCACCCTTGGAAACAT 1459592
Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284
|||| || ||||||||||||| ||||||||||| | ||| |||||||| || ||||
Sbjct 1459591 CACCCTCAAAGTACTGCCACTTGACAAACCTGGCAACCGCGTGCATGTCAGACAAATCGT 1459532
Query 160285 ATTTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCA 160342
| || | | ||||| | |||| || | || || | ||| | ||| |||||
Sbjct 1459531 ACTTATGGCTGGCAGGGCGTGATCCCCGG--ACTTCAGGAATCCTCTGGATGGTAGCCCA 1459474
Query 160343 CAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT 160402
|| | || || ||||| || ||||| | | ||| ||||| |||| | ||||
Sbjct 1459473 GAGATACTCATCAGGGCTATATGTGTCTTGCGCCCACTCCATAAACTTTTGGATTTTTTC 1459414
Query 160403 GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462
| | | || || | || || || | || |||||||| || ||||| ||||
Sbjct 1459413 ATTCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCC--AGAA 1459356
Query 160463 TATCGGTATGGGTATAGGCGGCGT--GTCTTTGTCCTGACCGGTGTTAGACACCACTCCT 160520
| || || | || ||| | | |||| | || ||||| | || | |||
Sbjct 1459355 AAAGGGGGTGTTTCCAG-CGGAGGAAGCATTTGACAGTCCCTGTGTTTGTCAACTTTCCA 1459297
Query 160521 TTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGG-TGGCATGCGTTCCGT 160579
|| | | | | ||||| |||| ||| | |||| || |||||| | ||||||
Sbjct 1459296 TTAATGACCTCAGACCGCTTTTTCCGCCTTTCT-TCTTCACTGGATGGCATCCTTTCCGT 1459238
Query 160580 CTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTT 160639
|| || ||||| | || | | | || |||| | |||| | ||||||| || ||
Sbjct 1459237 TTCCAGGCTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACATTTCCTAGGTTGGTTTT 1459178
Query 160640 GAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTG 160699
| ||||| || |||| || | ||||||| ||||||||| ||||| |||| | ||
Sbjct 1459177 AATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTCGCCCTCA--TTGTA 1459120
Query 160700 CAG--GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACG 160757
||| |||| ||||||| || | || ||||| || | ||||| || || || || ||
Sbjct 1459119 CAGAAGTCCTTCATGCAGTTGAGTTCAGCCTGAACCCAGCTCCCCGACGCATAAACCACA 1459060
Query 160758 TTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCC 160817
|||| | |||||||||||||| ||| |||||| || | || |||| ||| | |
Sbjct 1459059 CTCTCCGATGGGCTGGCCACAAAGACATTACTGAAACAGGAAGCAATGCCCATCACTG-C 1459001
Query 160818 AG--AAAGAACATCTTATCC---GCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAG 160872
|| ||| | | |||| | ||| |||| | || |||||||| | |||||||
Sbjct 1459000 AGCTAAATAGGA----ATCCTGGGATTTTTTGTCCGCATGAACGCAATAGAAATTCTGAG 1458945
Query 160873 GCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAG 160932
|| || |||||||| || | || || | ||| || ||||| ||||| | ||||||||
Sbjct 1458944 GCATATAAATGGCCCTCAGTAGCCCATCAAGCATTTCGATCTTGTGATGAACCACGATAG 1458885
Query 160933 AGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCG 160992
| || ||||| |||||||| | ||| || ||| |||| | | | || || |||
Sbjct 1458884 AATATGCTATTGGAAACTCTGCCTCTTCTTTACTAAGGGGCTCTACAATATATTTGCGCC 1458825
Query 160993 TCTTGATAAAATAATCA 161009
||||||| ||| |||||
Sbjct 1458824 TCTTGATGAAAGAATCA 1458808
>seq202
Length=3867970
Score = 163 bits (180), Expect = 3e-35
Identities = 230/323 (71%), Gaps = 0/323 (0%)
Strand=Plus/Plus
Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209
|| || || | ||| | | |||| || ||||| || | || || || |||||||| |||
Sbjct 1652694 TAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCATAACCAAAGGTATTGAAGAGACAC 1652753
Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269
||| | || ||||| ||||||| |||||||||||| || || | ||||||||| ||||
Sbjct 1652754 ATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTGATGGTTGAGTTTTGGAGT 1652813
Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329
|||| || || ||||||| || || || | ||| || || || || || | | |
Sbjct 1652814 CCCAGCTCGGTAATGTTCAACTTGTCCTTGTAGGCAGGCTGGACCACCACCCCATAGCTG 1652873
Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389
| |||||||||||| | ||| || ||||| || || | |||||||| || || |||
Sbjct 1652874 TTGCTGAAGGTGGCTACGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATC 1652933
Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449
|| || || | || ||||| || ||||| | ||||| || || |||||| | |||
Sbjct 1652934 AGGACTTCGTAGGTAGTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTATTCAGCTGCTCT 1652993
Query 168450 CGCTCATCTTGAGTTACGACCTG 168472
| ||||| || || || || ||
Sbjct 1652994 CTTTCATCCTGGGTCACCACTTG 1653016
Score = 105 bits (116), Expect = 8e-18
Identities = 149/209 (71%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 167894 GTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACT 167953
||| || ||||| |||| || || |||| ||| |||||||| || || || ||| |
Sbjct 1649866 GTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTCCCCACCTGATT 1649922
Query 167954 CTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAAC 168013
||| || ||||| || || | |||||||| ||| ||| || ||||| | || | ||
Sbjct 1649923 CTTAGGGTCTTTGACCTGGAGGATGCTAGTAACAGATGTGGTCCCATTTGGGTGAGACAC 1649982
Query 168014 GGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGG 168073
|| | || || || ||||||||||| | | ||||||||| | || || || || ||
Sbjct 1649983 AGTCTCTGTACTATTTTCAATCCCTGACCGAGGAACCTTCCAGGAGATCACGGGGGCTGG 1650042
Query 168074 TCGTGCTGTAGCAGAGCAGGTAATATTTA 168102
|| || || |||||||| || || ||||
Sbjct 1650043 GCGGGCAGTGGCAGAGCAAGTGATGTTTA 1650071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577167567742560
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