Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq151 334 9e-87 seq465 250 3e-61 seq202 163 3e-35 >seq151 Length=5769222 Score = 334 bits (370), Expect = 9e-87 Identities = 673/990 (68%), Gaps = 11/990 (1%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||||| || |||| ||| |||| ||| || | |||||| || ||| || ||| Sbjct 2474348 TGTCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCATGTCAAACTTA 2474289 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || |||| || || || | || ||||||| || ||| || | ||||| | | Sbjct 2474288 TTGGCAAACAAGTGATGC---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAAATG 2474232 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || || | |||||| |||| ||| || ||||| |||| || || | || ||| Sbjct 2474231 CACACCGAGCGCACGTGCACCCCGTCGCAGGGTGGGTAGGGAGCACCCTTGGAAACATCA 2474172 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| |||||||||||||| || ||||| Sbjct 2474171 CCCTCAAAGTACTGCCACTTGACAAACCTGGCAATCGCCTGCATGTCAGACAAATCGTAC 2474112 Query 160287 TTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 || | | ||| | || |||||| | | || || | ||| | ||| ||||| | Sbjct 2474111 TTATGGCTGGCAGAGAGTGAGC-CCGGGA-CTTCAGGAATCCTCTGGATGGTAGCCCAGA 2474054 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404 | | || || ||||| || ||||| | | ||| ||||| |||| | |||| | Sbjct 2474053 GATACTCATCAGGGCTATATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTCAT 2473994 Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464 | | || || | || || || | || |||||||| || ||||| || || | Sbjct 2473993 TCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAAAA 2473934 Query 160465 TCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCA 160524 | ||| | | | || || |||| | || ||||| | || | ||| || | Sbjct 2473933 TGGGTGTTGCCAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAACTTTCCATTAA 2473874 Query 160525 CCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTA 160584 | | | | ||||| |||||||| | || | | |||||| | ||||| || | Sbjct 2473873 TGACCTCATACCGCTTTTTCCACCTTTCTTCTTTATTGGATGGCATCCTCTCCGTTTCCA 2473814 Query 160585 GACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644 | |||| | || | | | || |||| | |||| || |||||||| || || | | Sbjct 2473813 GGTTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAATAG 2473754 Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704 |||| || |||| || | ||||||| ||||||||| ||||| |||| ||| |||| Sbjct 2473753 GAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTCGCCCTCATTGCGTAGAGGT 2473694 Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764 || ||||||| || | || ||||| || |||||||| || || || || || |||| | Sbjct 2473693 CCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTCCA 2473634 Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAA 160822 | |||||||| ||||| ||| |||||| || | || |||| ||| || || ||| Sbjct 2473633 ATCGGCTGGCCACGAAGACATTACTGAAACAGGATGCAATGCCCATCACTGC-AGCTAAA 2473575 Query 160823 GAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 | | | || | ||| |||||| || | ||||| | ||||||||| ||||| Sbjct 2473574 TAGGAA-TCCTCGGATTTTTTGTCCACATGAATACAATAGAAATTCTGAGGCATATAGAT 2473516 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 |||||| || | ||| || | ||| || ||||| ||||| | ||||||||| || ||||| Sbjct 2473515 GGCCCTCAGTAGCCTGTCAAGCATTTCGATCTTGTGATGAACCACGATAGAATACGCTAT 2473456 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 |||||||| | ||| || ||| |||| | | | || || ||| ||||||| || Sbjct 2473455 TGGAAACTCTGCCTCTTCTTTACTAAGGGGCTCTACAATATATTTGCGCCTCTTGATGAA 2473396 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 | ||| ||| || | |||||||| ||||| Sbjct 2473395 AGAATTACAGTCACTGGTCATGTTTATATA 2473366 >seq465 Length=1645510 Score = 250 bits (276), Expect = 3e-61 Identities = 651/977 (67%), Gaps = 32/977 (3%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTC--GTCGAATT 160104 |||| |||||| || |||| ||| |||| ||| || | ||||| | ||| ||| || | Sbjct 1459766 TGTCTCAGATGCTCCTCCAAACACTGGATGGCAAAGAGGTCAA--TATTCATGTCAAACT 1459709 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || ||| ||||| || | || ||||||| || ||| || | ||||| | Sbjct 1459708 TATTGGCAGACAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCGCCAGCTCCGAAAA 1459652 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||| || || || | | |||| ||| ||| | ||||| |||| || || | || | Sbjct 1459651 TGCACACCGAGCGCACGAGCACCCCGCCGCACAGTGGGTAGGGAGCACCCTTGGAAACAT 1459592 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 |||| || ||||||||||||| ||||||||||| | ||| |||||||| || |||| Sbjct 1459591 CACCCTCAAAGTACTGCCACTTGACAAACCTGGCAACCGCGTGCATGTCAGACAAATCGT 1459532 Query 160285 ATTTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCA 160342 | || | | ||||| | |||| || | || || | ||| | ||| ||||| Sbjct 1459531 ACTTATGGCTGGCAGGGCGTGATCCCCGG--ACTTCAGGAATCCTCTGGATGGTAGCCCA 1459474 Query 160343 CAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT 160402 || | || || ||||| || ||||| | | ||| ||||| |||| | |||| Sbjct 1459473 GAGATACTCATCAGGGCTATATGTGTCTTGCGCCCACTCCATAAACTTTTGGATTTTTTC 1459414 Query 160403 GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462 | | | || || | || || || | || |||||||| || ||||| |||| Sbjct 1459413 ATTCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCC--AGAA 1459356 Query 160463 TATCGGTATGGGTATAGGCGGCGT--GTCTTTGTCCTGACCGGTGTTAGACACCACTCCT 160520 | || || | || ||| | | |||| | || ||||| | || | ||| Sbjct 1459355 AAAGGGGGTGTTTCCAG-CGGAGGAAGCATTTGACAGTCCCTGTGTTTGTCAACTTTCCA 1459297 Query 160521 TTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGG-TGGCATGCGTTCCGT 160579 || | | | | ||||| |||| ||| | |||| || |||||| | |||||| Sbjct 1459296 TTAATGACCTCAGACCGCTTTTTCCGCCTTTCT-TCTTCACTGGATGGCATCCTTTCCGT 1459238 Query 160580 CTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTT 160639 || || ||||| | || | | | || |||| | |||| | ||||||| || || Sbjct 1459237 TTCCAGGCTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACATTTCCTAGGTTGGTTTT 1459178 Query 160640 GAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTG 160699 | ||||| || |||| || | ||||||| ||||||||| ||||| |||| | || Sbjct 1459177 AATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTCGCCCTCA--TTGTA 1459120 Query 160700 CAG--GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACG 160757 ||| |||| ||||||| || | || ||||| || | ||||| || || || || || Sbjct 1459119 CAGAAGTCCTTCATGCAGTTGAGTTCAGCCTGAACCCAGCTCCCCGACGCATAAACCACA 1459060 Query 160758 TTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCC 160817 |||| | |||||||||||||| ||| |||||| || | || |||| ||| | | Sbjct 1459059 CTCTCCGATGGGCTGGCCACAAAGACATTACTGAAACAGGAAGCAATGCCCATCACTG-C 1459001 Query 160818 AG--AAAGAACATCTTATCC---GCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAG 160872 || ||| | | |||| | ||| |||| | || |||||||| | ||||||| Sbjct 1459000 AGCTAAATAGGA----ATCCTGGGATTTTTTGTCCGCATGAACGCAATAGAAATTCTGAG 1458945 Query 160873 GCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAG 160932 || || |||||||| || | || || | ||| || ||||| ||||| | |||||||| Sbjct 1458944 GCATATAAATGGCCCTCAGTAGCCCATCAAGCATTTCGATCTTGTGATGAACCACGATAG 1458885 Query 160933 AGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCG 160992 | || ||||| |||||||| | ||| || ||| |||| | | | || || ||| Sbjct 1458884 AATATGCTATTGGAAACTCTGCCTCTTCTTTACTAAGGGGCTCTACAATATATTTGCGCC 1458825 Query 160993 TCTTGATAAAATAATCA 161009 ||||||| ||| ||||| Sbjct 1458824 TCTTGATGAAAGAATCA 1458808 >seq202 Length=3867970 Score = 163 bits (180), Expect = 3e-35 Identities = 230/323 (71%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || ||||| || | || || || |||||||| ||| Sbjct 1652694 TAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCATAACCAAAGGTATTGAAGAGACAC 1652753 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | || ||||| ||||||| |||||||||||| || || | ||||||||| |||| Sbjct 1652754 ATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTGATGGTTGAGTTTTGGAGT 1652813 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || ||||||| || || || | ||| || || || || || | | | Sbjct 1652814 CCCAGCTCGGTAATGTTCAACTTGTCCTTGTAGGCAGGCTGGACCACCACCCCATAGCTG 1652873 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||||||||||| | ||| || ||||| || || | |||||||| || || ||| Sbjct 1652874 TTGCTGAAGGTGGCTACGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATC 1652933 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 || || || | || ||||| || ||||| | ||||| || || |||||| | ||| Sbjct 1652934 AGGACTTCGTAGGTAGTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTATTCAGCTGCTCT 1652993 Query 168450 CGCTCATCTTGAGTTACGACCTG 168472 | ||||| || || || || || Sbjct 1652994 CTTTCATCCTGGGTCACCACTTG 1653016 Score = 105 bits (116), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 167894 GTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACT 167953 ||| || ||||| |||| || || |||| ||| |||||||| || || || ||| | Sbjct 1649866 GTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTCCCCACCTGATT 1649922 Query 167954 CTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAAC 168013 ||| || ||||| || || | |||||||| ||| ||| || ||||| | || | || Sbjct 1649923 CTTAGGGTCTTTGACCTGGAGGATGCTAGTAACAGATGTGGTCCCATTTGGGTGAGACAC 1649982 Query 168014 GGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGG 168073 || | || || || ||||||||||| | | ||||||||| | || || || || || Sbjct 1649983 AGTCTCTGTACTATTTTCAATCCCTGACCGAGGAACCTTCCAGGAGATCACGGGGGCTGG 1650042 Query 168074 TCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 || || || |||||||| || || |||| Sbjct 1650043 GCGGGCAGTGGCAGAGCAAGTGATGTTTA 1650071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577167567742560