Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq526 129 9e-25 >seq526 Length=1402496 Score = 129 bits (142), Expect = 9e-25 Identities = 471/727 (65%), Gaps = 15/727 (2%) Strand=Plus/Plus Query 17870 TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATA 17929 || || || ||| | ||||| ||||| || ||||||||||||| ||| || | |||| Sbjct 113397 TACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATA 113456 Query 17930 AAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTA 17989 || ||||||||||| || | || | || || | | | | || ||| Sbjct 113457 AAGTCAAATGGATTCTCTATTCTGAAA-ACCTTGCTAAAACCCAGTTCCAGCATG-TCTG 113514 Query 17990 TCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAA 18049 ||||| ||||| || | ||||| ||| | | ||||||||| || | || | | Sbjct 113515 TCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTCCACA 113574 Query 18050 GGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATT 18109 || | || ||| ||| ||| |||| |||||| ||||| | | |||| | | || Sbjct 113575 GGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCATTGATAGTTATTTCTCTT 113634 Query 18110 ACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCA 18169 || || | || ||| | | || ||| || || || | || ||||||| Sbjct 113635 ACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTG-AACATCAGG--CAAGCAAAATGT 113691 Query 18170 GTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATA 18229 | ||||||||| ||||||||| | | || | | ||| || | || ||||| | Sbjct 113692 GAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGGCATCAGT 113751 Query 18230 CCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC- 18288 |||| ||| || ||||| ||||| ||||| ||| || ||||||| | || || || || Sbjct 113752 CCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCCTTCCACT 113811 Query 18289 GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATTTTTG 18348 ||| || || |||| | | |||| || | | | ||| | ||||| Sbjct 113812 GCA-GCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAA 113870 Query 18349 TGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATC 18408 ||||| ||| | | | ||| || || | || || ||||| || | | || Sbjct 113871 GGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC 113930 Query 18409 TTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTAT 18468 |||| |||| ||||||||| ||||||||||| | | | |||||||||||||||||| Sbjct 113931 CCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCAGAATGTAT 113990 Query 18469 GCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCC-TCGGGATATTGAA--TC-T 18524 | ||||||| || || || || | ||| || | | |||| || | | |||| || | Sbjct 113991 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAGC-AGCCTTCTGTAATCTGAAGTTCTT 114049 Query 18525 CGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATG 18584 ||| ||||| || ||||| || ||||| ||||| || ||| | ||| | || | Sbjct 114050 GGCT---AAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGGAAAG 114106 Query 18585 CCAAAAC 18591 ||| ||| Sbjct 114107 CCAGAAC 114113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731806534049600