Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq526 129 9e-25
>seq526
Length=1402496
Score = 129 bits (142), Expect = 9e-25
Identities = 471/727 (65%), Gaps = 15/727 (2%)
Strand=Plus/Plus
Query 17870 TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATA 17929
|| || || ||| | ||||| ||||| || ||||||||||||| ||| || | ||||
Sbjct 113397 TACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATA 113456
Query 17930 AAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTA 17989
|| ||||||||||| || | || | || || | | | | || |||
Sbjct 113457 AAGTCAAATGGATTCTCTATTCTGAAA-ACCTTGCTAAAACCCAGTTCCAGCATG-TCTG 113514
Query 17990 TCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAA 18049
||||| ||||| || | ||||| ||| | | ||||||||| || | || | |
Sbjct 113515 TCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTCCACA 113574
Query 18050 GGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATT 18109
|| | || ||| ||| ||| |||| |||||| ||||| | | |||| | | ||
Sbjct 113575 GGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCATTGATAGTTATTTCTCTT 113634
Query 18110 ACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCA 18169
|| || | || ||| | | || ||| || || || | || |||||||
Sbjct 113635 ACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTG-AACATCAGG--CAAGCAAAATGT 113691
Query 18170 GTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATA 18229
| ||||||||| ||||||||| | | || | | ||| || | || ||||| |
Sbjct 113692 GAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGGCATCAGT 113751
Query 18230 CCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC- 18288
|||| ||| || ||||| ||||| ||||| ||| || ||||||| | || || || ||
Sbjct 113752 CCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCCTTCCACT 113811
Query 18289 GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATTTTTG 18348
||| || || |||| | | |||| || | | | ||| | |||||
Sbjct 113812 GCA-GCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAA 113870
Query 18349 TGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATC 18408
||||| ||| | | | ||| || || | || || ||||| || | | ||
Sbjct 113871 GGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC 113930
Query 18409 TTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTAT 18468
|||| |||| ||||||||| ||||||||||| | | | ||||||||||||||||||
Sbjct 113931 CCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCAGAATGTAT 113990
Query 18469 GCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCC-TCGGGATATTGAA--TC-T 18524
| ||||||| || || || || | ||| || | | |||| || | | |||| || |
Sbjct 113991 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAGC-AGCCTTCTGTAATCTGAAGTTCTT 114049
Query 18525 CGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATG 18584
||| ||||| || ||||| || ||||| ||||| || ||| | ||| | || |
Sbjct 114050 GGCT---AAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGGAAAG 114106
Query 18585 CCAAAAC 18591
||| |||
Sbjct 114107 CCAGAAC 114113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731806534049600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |