Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq290 91.5 1e-13 seq69 87.8 1e-12 seq573 84.2 2e-11 seq434 84.2 2e-11 seq19 82.4 6e-11 >seq290 Length=2922102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 107554 AAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTG 107613 ||||||| |||||||| ||||| | | || || ||||| ||| |||| | || || Sbjct 1757769 AAATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACCCTCGAGGCTGAACCTT 1757710 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | ||||| ||||| ||||||||||| | || |||| Sbjct 1757709 CGGATACGATAGAAAATGTAAAGTCCAAGATCCAGGATAAAGAAGGAATTCCTTGTGATC 1757650 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||| || || || | ||| || || || ||||| || | || || | ||||||| Sbjct 1757649 AGCAAAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACA 1757590 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAA 107793 |||||||||||||||||| | || | ||||||||| | || || || ||| |||| Sbjct 1757589 ACATTCAAAAGGAGTCTATTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAA 1757530 >seq69 Length=11786368 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| ||||| || ||||| | ||||| || ||||| | | |||| || | Sbjct 9297008 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCAACCTCGAGGTTGAACCC 9297067 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||||| | | ||||| ||||| ||||| |||||| | || ||| Sbjct 9297068 TTGGATACTACAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGAT 9297127 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| ||||| || | ||| || || || ||||| || | || || | |||||| Sbjct 9297128 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGAGGTACTTTGTCTGACTAC 9297187 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792 |||||||| ||||||||||| | || | ||||||||| | || || || ||| ||| Sbjct 9297188 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAA 9297247 Query 107793 A 107793 | Sbjct 9297248 A 9297248 >seq573 Length=1150292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| ||||| || ||||| | || || || ||||| ||| |||| || | Sbjct 200699 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 200640 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | ||||| ||||| ||||| ||||| | || ||| Sbjct 200639 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 200580 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| ||||| || | ||| || || || ||||| || | || || | |||||| Sbjct 200579 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 200520 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792 |||||||| ||||||||||| | || | ||||||||| | || || || ||| ||| Sbjct 200519 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAA 200460 Query 107793 A 107793 | Sbjct 200459 A 200459 >seq434 Length=1819716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| ||||| || ||||| | ||||| || ||||| ||| |||| || | Sbjct 1331511 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 1331452 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | ||||| ||||| ||||| ||||| | || ||| Sbjct 1331451 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1331392 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| ||||| || | ||| || || || ||||| || | || || | ||||| Sbjct 1331391 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAT 1331332 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792 |||||||| ||||||||||| | || | ||||||||| | || || || ||| ||| Sbjct 1331331 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAA 1331272 Query 107793 A 107793 | Sbjct 1331271 A 1331271 >seq19 Length=20362211 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||||||||| | || |||||||| ||||| || | ||| || || || ||||| Sbjct 6160438 GATAAAGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 6160497 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||| || || | |||||||||||||||||||||| ||| | || | |||||| Sbjct 6160498 GACGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTTTACTCTTCATCTTGTGTTG 6160557 Query 107769 AGATTGCGAGGGGGAAATAATAAAA 107793 ||| | | || ||| ||| |||| Sbjct 6160558 AGACTTTGTGGTGGAGTTAAGAAAA 6160582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398842012458484