Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq290 91.5 1e-13
seq69 87.8 1e-12
seq573 84.2 2e-11
seq434 84.2 2e-11
seq19 82.4 6e-11
>seq290
Length=2922102
Score = 91.5 bits (100), Expect = 1e-13
Identities = 164/240 (68%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 107554 AAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTG 107613
||||||| |||||||| ||||| | | || || ||||| ||| |||| | || ||
Sbjct 1757769 AAATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACCCTCGAGGCTGAACCTT 1757710
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
||||| | | | ||||| ||||| ||||||||||| | || ||||
Sbjct 1757709 CGGATACGATAGAAAATGTAAAGTCCAAGATCCAGGATAAAGAAGGAATTCCTTGTGATC 1757650
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
|||| || || || | ||| || || || ||||| || | || || | |||||||
Sbjct 1757649 AGCAAAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACA 1757590
Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAA 107793
|||||||||||||||||| | || | ||||||||| | || || || ||| ||||
Sbjct 1757589 ACATTCAAAAGGAGTCTATTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAA 1757530
>seq69
Length=11786368
Score = 87.8 bits (96), Expect = 1e-12
Identities = 164/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||| ||||| || ||||| | ||||| || ||||| | | |||| || |
Sbjct 9297008 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCAACCTCGAGGTTGAACCC 9297067
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
|||||| | | ||||| ||||| ||||| |||||| | || |||
Sbjct 9297068 TTGGATACTACAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGAT 9297127
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
||||| ||||| || | ||| || || || ||||| || | || || | ||||||
Sbjct 9297128 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGAGGTACTTTGTCTGACTAC 9297187
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792
|||||||| ||||||||||| | || | ||||||||| | || || || ||| |||
Sbjct 9297188 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAA 9297247
Query 107793 A 107793
|
Sbjct 9297248 A 9297248
>seq573
Length=1150292
Score = 84.2 bits (92), Expect = 2e-11
Identities = 163/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||| ||||| || ||||| | || || || ||||| ||| |||| || |
Sbjct 200699 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 200640
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||||| | | | ||||| ||||| ||||| ||||| | || |||
Sbjct 200639 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 200580
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
||||| ||||| || | ||| || || || ||||| || | || || | ||||||
Sbjct 200579 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 200520
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792
|||||||| ||||||||||| | || | ||||||||| | || || || ||| |||
Sbjct 200519 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAA 200460
Query 107793 A 107793
|
Sbjct 200459 A 200459
>seq434
Length=1819716
Score = 84.2 bits (92), Expect = 2e-11
Identities = 163/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||| ||||| || ||||| | ||||| || ||||| ||| |||| || |
Sbjct 1331511 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 1331452
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||||| | | | ||||| ||||| ||||| ||||| | || |||
Sbjct 1331451 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1331392
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
||||| ||||| || | ||| || || || ||||| || | || || | |||||
Sbjct 1331391 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAT 1331332
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792
|||||||| ||||||||||| | || | ||||||||| | || || || ||| |||
Sbjct 1331331 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAA 1331272
Query 107793 A 107793
|
Sbjct 1331271 A 1331271
>seq19
Length=20362211
Score = 82.4 bits (90), Expect = 6e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708
||||||||||| | || |||||||| ||||| || | ||| || || || |||||
Sbjct 6160438 GATAAAGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 6160497
Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|||| || || | |||||||||||||||||||||| ||| | || | ||||||
Sbjct 6160498 GACGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTTTACTCTTCATCTTGTGTTG 6160557
Query 107769 AGATTGCGAGGGGGAAATAATAAAA 107793
||| | | || ||| ||| ||||
Sbjct 6160558 AGACTTTGTGGTGGAGTTAAGAAAA 6160582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398842012458484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |