Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq81 89.7 2e-12 >seq81 Length=9863444 Score = 89.7 bits (98), Expect = 2e-12 Identities = 240/359 (67%), Gaps = 11/359 (3%) Strand=Plus/Minus Query 188738 ATGATGGAGTAAAGATCAAAAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTA 188797 |||||| |||| | ||||| |||| || | | |||| || ||||| ||||||| Sbjct 3696328 ATGATGACATAAAACTTGAAAAAAGTAATATTTTGCTGCTTGGACCAACTGGGTCAGGTA 3696269 Query 188798 AAACATTATTTGCTCAAACATTGGCTGATATG-TTACATGTACCTCTAGCTATCTCTGAT 188856 |||| | | || ||||| | ||| | ||| | |||| ||| | ||||||| ||| Sbjct 3696268 AAACCCTGCTGGCACAAACCCTAGCT-AAATGCCTTGATGTCCCTTTTGCTATCTGTGAC 3696210 Query 188857 GCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGT-ATTGCTTCG 188915 || |||| || | ||||| ||||| ||||||||| | ||| || |||| Sbjct 3696209 TGTACAACTTTGACTCAGGCTGGATATGTGGGTGAAGATATTGAATCTGTGATTG-GCAA 3696151 Query 188916 TTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGA 188975 || |||||| || |||| | | ||| ||| ||| |||||||| | | | || Sbjct 3696150 ACTACTCCAAGATGCCAATTATAACGTGGAAAAAGCACAACAAGGAATTGTCTTTCTGGA 3696091 Query 188976 TGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCA--CATCCATTACCCGAGATGTATCT 189033 ||||||||||| |||| || || ||| |||| ||||| | |||||| | Sbjct 3696090 CGAAGTAGATAAGATTGGCAGTGTGCTAG---GCATTCATCAATTACAC--GATGTAGGT 3696036 Query 189034 GGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCC 189092 || ||||| || ||||||| ||| ||||| | | ||||| ||| | | || ||||| Sbjct 3696035 GGAGAAGGCGTTCAGCAAGGCTTACTAAAACTACTAGAAGGCACAATAGTCAATGTTCC 3695977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591764443705088