Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq151 251 8e-62 seq465 206 3e-48 seq202 190 2e-43 seq117 123 3e-23 >seq151 Length=5769222 Score = 251 bits (278), Expect = 8e-62 Identities = 611/920 (66%), Gaps = 9/920 (1%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||||| |||| ||| || | |||||||| || || | ||| ||| || ||| Sbjct 2474351 TTATGTCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCATGTCAAAC 2474292 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||| ||||||| || || ||||| || | || || | |||||| Sbjct 2474291 TTATTGGCAAACAAGTGATGC---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAA 2474235 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | |||||| || ||||||||||| ||| ||| || || || | || || | | ||| Sbjct 2474234 ATGCACACCGAGCGCACGTGCACCCCGTCGCAGGGTGGGTAGGGAGCACCCTTGGAAACA 2474175 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| |||| |||||||| || ||||| | || ||||||||||| || ||| Sbjct 2474174 TCACCCTCAAAGTACTGCCACTTGACAAACCTGGCAATCGCCTGCATGTCAGACAAATCG 2474115 Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | ||| | | | | || || || | || | ||||| | |||||||| Sbjct 2474114 TACTTATGG-CTGGCAGAGAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTAGCCCA 2474056 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | || || || ||||| || || | | ||||||||| |||| || ||| Sbjct 2474055 GAGATACTCATCAGGGCTATATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTC 2473996 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || | ||| | || || || ||| | || | |||||| || || |||||||| Sbjct 2473995 ATTCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAA 2473936 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | |||| | | ||||| || |||| | || ||||| | | |||| | Sbjct 2473935 AATGGGTGTTGCCAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAACTTTCCATT 2473876 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTC 162605 | |||| | | | ||| ||||||| | ||| ||| | | || || || Sbjct 2473875 AATGACCTCATACCGCTTTTTCCACCTTTCTTCTTTATTGGATGGCATCCTCTCCGTTTC 2473816 Query 162606 TAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAG 162665 || |||| ||| ||| ||| |||| | || || ||||| ||||| |||| Sbjct 2473815 CAGGTTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAAT 2473756 Query 162666 GGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAG 162725 ||||| || | || || ||||| || | || ||||| || | || | | |||| || Sbjct 2473755 AGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTCGCCCTCATTGCGTAGAG 2473696 Query 162726 ATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTC 162785 |||| | ||||| || || ||||| || || |||||||| || || || || ||||| Sbjct 2473695 GTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTC 2473636 Query 162786 CAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGA 162845 ||| | |||| || |||||||| |||||| || | || |||||||| || | | Sbjct 2473635 CAATCGGCTGGCCACGAAGACATTACTGAAACAGGATGCAATGCCCATCACTGCAGCTAA 2473576 Query 162846 GAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAG 162903 | ||| || | ||| | || || || | || || | ||||||||| ||| Sbjct 2473575 ATAGGAATCC--TCGGATTTTTTGTCCACATGAATACAATAGAAATTCTGAGGCATATAG 2473518 Query 162904 ATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCT 162963 ||||||||||||| || || | ||| || ||||| || || |||||||||||||||||| Sbjct 2473517 ATGGCCCTCAGTAGCCTGTCAAGCATTTCGATCTTGTGATGAACCACGATAGAATACGCT 2473458 Query 162964 ATGGGGAACTCAGCCTCCTC 162983 || || ||||| ||||| || Sbjct 2473457 ATTGGAAACTCTGCCTCTTC 2473438 >seq465 Length=1645510 Score = 206 bits (228), Expect = 3e-48 Identities = 609/925 (66%), Gaps = 18/925 (2%) Strand=Plus/Minus Query 162066 CTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAA 162125 |||||||| |||| ||| || | |||||||| || || | ||| | | || || Sbjct 1459770 CTTATGTCTCAGATGCTCCTCCAAACACTGGATGGCAAAGAGGTCAATATTCATGTCAAA 1459711 Query 162126 CTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAA 162185 ||| || || ||| ||| ||| || || ||||| || | || || | |||||| Sbjct 1459710 CTTATTGGCAGACAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCGCCAGCTCCGAA 1459654 Query 162186 CACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCAC 162245 | |||||| || |||||| |||| |||| |||| | || || | || || | | || Sbjct 1459653 AATGCACACCGAGCGCACGAGCACCCCGCCGCACAGTGGGTAGGGAGCACCCTTGGAAAC 1459594 Query 162246 ATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTC 162305 ||| ||||| |||| |||||||| || ||||| | | || |||||||| || || Sbjct 1459593 ATCACCCTCAAAGTACTGCCACTTGACAAACCTGGCAACCGCGTGCATGTCAGACAAATC 1459534 Query 162306 GTACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCC 162364 |||||| | ||| | | || | ||| | || | || | ||||| | ||||||| Sbjct 1459533 GTACTTATGG-CTGGCAGGGCGTGATCCCCGGACTTCAGGAATCCTCTGGATGGTAGCCC 1459475 Query 162365 ACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTT 162424 | || | || || || ||||| || || | || ||||||||| |||| || ||| Sbjct 1459474 AGAGATACTCATCAGGGCTATATGTGTCTTGCGCCCACTCCATAAACTTTTGGATTTTTT 1459415 Query 162425 TATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAA 162484 || | ||| | || || || ||| | || | |||||| || || ||||||| Sbjct 1459414 CATTCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAA 1459355 Query 162485 ACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCT 162544 | |||| | | ||||| || |||| | || ||||| | | |||| | Sbjct 1459354 AAGGGGGTGTTTCCAGCGGAGGAAGCA-TTTGACAGTCCCTGTGTTTGTCAACTTTCCAT 1459296 Query 162545 CTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTT-ACTGGTAGACGGGTGTTCGGTC 162603 | |||| | | ||| ||| ||| | |||| ||||| | | ||| || Sbjct 1459295 TAATGACCTCAGACCGCTTTTTCCGCCTTTCT-TCTTCACTGGATGGCATCCTTTCCGTT 1459237 Query 162604 TCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTA 162663 || || ||||| ||| ||| ||| |||| | || | |||| ||||| ||| Sbjct 1459236 TCCAGGCTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACATTTCCTAGGTTGGTTTTA 1459177 Query 162664 AGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTAC 162723 | ||||| || | || || ||||| || | || ||||| || | || | | |||| Sbjct 1459176 ATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTCGCCCTCATT--GTAC 1459119 Query 162724 AGA--TCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGC 162781 ||| |||| | ||||| || || ||||| || | |||| |||||| || || || | Sbjct 1459118 AGAAGTCCTTCATGCAGTTGAGTTCAGCCTGAACCCAGCTCCCCGACGCATAAACCACAC 1459059 Query 162782 TCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCA 162841 ||||| | |||| ||||||||||| |||||| ||| | || |||||||| | || Sbjct 1459058 TCTCCGATGGGCTGGCCACAAAGACATTACTGAAACAGGAAGCAATGCCCATCACTG-CA 1459000 Query 162842 GTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGG 162898 | | || | | ||| | ||| | || | || ||||| || | ||||||||| Sbjct 1458999 GCTA-AATA-GGAATCCTGGGATTTTTTGTCCGCATGAACGCAATAGAAATTCTGAGGCA 1458942 Query 162899 CGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAAT 162958 || ||||||||||||| | || | ||| || ||||| || || ||||||||||||| Sbjct 1458941 TATAAATGGCCCTCAGTAGCCCATCAAGCATTTCGATCTTGTGATGAACCACGATAGAAT 1458882 Query 162959 ACGCTATGGGGAACTCAGCCTCCTC 162983 | ||||| || ||||| ||||| || Sbjct 1458881 ATGCTATTGGAAACTCTGCCTCTTC 1458857 >seq202 Length=3867970 Score = 190 bits (210), Expect = 2e-43 Identities = 237/325 (73%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || || || | ||||| ||||| || | || Sbjct 1652692 CATAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCATAACCAAAGGTATTGAAGAGAC 1652751 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||||| ||||| || || | || || ||| || Sbjct 1652752 ACATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTGATGGTTGAGTTTTGGA 1652811 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | |||||||||| | ||||||||| | ||||||||| || || || | Sbjct 1652812 GTCCCAGCTCGGTAATGTTCAACTTGTCCTTGTAGGCAGGCTGGACCACCACCCCATAGC 1652871 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 | | |||||| ||||| | |||||| ||||| ||| || | |||||||| || || | Sbjct 1652872 TGTTGCTGAAGGTGGCTACGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAA 1652931 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | ||||| | | ||||| |||||||||||||| |||||||| || |||| | Sbjct 1652932 TCAGGACTTCGTAGGTAGTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTATTCAGCTGCT 1652991 Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095 | ||||| || || || ||||| || Sbjct 1652992 CTCTTTCATCCTGGGTCACCACTTG 1653016 Score = 147 bits (162), Expect = 3e-30 Identities = 167/221 (76%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 171506 GTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTT 171565 |||||| | | ||| || |||||||||| ||| | || | ||| |||||||||| | Sbjct 1649855 GTTTGTTTAAAGTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT---TC 1649911 Query 171566 CCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTA 171625 ||||| ||| | ||||| ||||| || || || ||||||||||||||||| ||||| || Sbjct 1649912 CCCACCTGATTCTTAGGGTCTTTGACCTGGAGGATGCTAGTAACAGATGTGGTCCCATTT 1649971 Query 171626 CGATGTAGA-ACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATAT 171684 | || ||| || || | ||||||||||| || || || | | ||| ||||| | || Sbjct 1649972 GGGTG-AGACACAGTCTCTGTACTATTTTCAATCCCTGACCGAGGAACCTTCCAGGAGAT 1650030 Query 171685 AACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || || ||||| | ||||| ||||||||||| ||||||| Sbjct 1650031 CACGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 1650071 >seq117 Length=5941669 Score = 123 bits (136), Expect = 3e-23 Identities = 398/607 (66%), Gaps = 17/607 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || || | | | Sbjct 5461264 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 5461205 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 5461204 CTAGCTCGCTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 5461145 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| || || || | ||||| | || |||| || || Sbjct 5461144 TCTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 5461085 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||| || ||||| || || || |||||||| | || || || || | ||||| |||| Sbjct 5461084 TGTAAAGCTTTTCTGTGATGTAATCCCTGTGGATTGAATTTTCGAAGGAAAGATAAAATT 5461025 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 5461024 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 5460967 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 |||||| ||| || || || ||| || ||||| ||| || || || || | | Sbjct 5460966 CCCGTAAGTATGGATTTCAATACTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 5460908 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| || ||||| |||||||| || || Sbjct 5460907 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 5460853 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | | | || | || | | ||||| ||||| || ||||| || Sbjct 5460852 TTCAAACACGAAGGGATTTGTGCTCACTGTCAAGAAGCCATAAGGCACTTGGATATCTGA 5460793 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419 |||||| | ||| || | || || || || | || || || | || |||| ||| Sbjct 5460792 GTCGCGGCGGTAAGTCAGAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTG--GGGA 5460735 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 | | | | || ||||| || |||||||| ||||| || || |||| ||| || | || | Sbjct 5460734 GTATGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGC 5460675 Query 177480 GTAGGTA 177486 ||||| Sbjct 5460674 TGAGGTA 5460668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578380259257600