Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq151 251 8e-62
seq465 206 3e-48
seq202 190 2e-43
seq117 123 3e-23
>seq151
Length=5769222
Score = 251 bits (278), Expect = 8e-62
Identities = 611/920 (66%), Gaps = 9/920 (1%)
Strand=Plus/Minus
Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126
||||||| |||| ||| || | |||||||| || || | ||| ||| || |||
Sbjct 2474351 TTATGTCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCATGTCAAAC 2474292
Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186
|| || || |||| ||||||| || || ||||| || | || || | ||||||
Sbjct 2474291 TTATTGGCAAACAAGTGATGC---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAA 2474235
Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246
| |||||| || ||||||||||| ||| ||| || || || | || || | | |||
Sbjct 2474234 ATGCACACCGAGCGCACGTGCACCCCGTCGCAGGGTGGGTAGGGAGCACCCTTGGAAACA 2474175
Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306
|| ||||| |||| |||||||| || ||||| | || ||||||||||| || |||
Sbjct 2474174 TCACCCTCAAAGTACTGCCACTTGACAAACCTGGCAATCGCCTGCATGTCAGACAAATCG 2474115
Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365
||||| | ||| | | | | || || || | || | ||||| | ||||||||
Sbjct 2474114 TACTTATGG-CTGGCAGAGAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTAGCCCA 2474056
Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425
|| | || || || ||||| || || | | ||||||||| |||| || |||
Sbjct 2474055 GAGATACTCATCAGGGCTATATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTC 2473996
Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485
|| | ||| | || || || ||| | || | |||||| || || ||||||||
Sbjct 2473995 ATTCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAA 2473936
Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545
| |||| | | ||||| || |||| | || ||||| | | |||| |
Sbjct 2473935 AATGGGTGTTGCCAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAACTTTCCATT 2473876
Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTC 162605
| |||| | | | ||| ||||||| | ||| ||| | | || || ||
Sbjct 2473875 AATGACCTCATACCGCTTTTTCCACCTTTCTTCTTTATTGGATGGCATCCTCTCCGTTTC 2473816
Query 162606 TAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAG 162665
|| |||| ||| ||| ||| |||| | || || ||||| ||||| ||||
Sbjct 2473815 CAGGTTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAAT 2473756
Query 162666 GGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAG 162725
||||| || | || || ||||| || | || ||||| || | || | | |||| ||
Sbjct 2473755 AGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTCGCCCTCATTGCGTAGAG 2473696
Query 162726 ATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTC 162785
|||| | ||||| || || ||||| || || |||||||| || || || || |||||
Sbjct 2473695 GTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTC 2473636
Query 162786 CAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGA 162845
||| | |||| || |||||||| |||||| || | || |||||||| || | |
Sbjct 2473635 CAATCGGCTGGCCACGAAGACATTACTGAAACAGGATGCAATGCCCATCACTGCAGCTAA 2473576
Query 162846 GAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAG 162903
| ||| || | ||| | || || || | || || | ||||||||| |||
Sbjct 2473575 ATAGGAATCC--TCGGATTTTTTGTCCACATGAATACAATAGAAATTCTGAGGCATATAG 2473518
Query 162904 ATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCT 162963
||||||||||||| || || | ||| || ||||| || || ||||||||||||||||||
Sbjct 2473517 ATGGCCCTCAGTAGCCTGTCAAGCATTTCGATCTTGTGATGAACCACGATAGAATACGCT 2473458
Query 162964 ATGGGGAACTCAGCCTCCTC 162983
|| || ||||| ||||| ||
Sbjct 2473457 ATTGGAAACTCTGCCTCTTC 2473438
>seq465
Length=1645510
Score = 206 bits (228), Expect = 3e-48
Identities = 609/925 (66%), Gaps = 18/925 (2%)
Strand=Plus/Minus
Query 162066 CTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAA 162125
|||||||| |||| ||| || | |||||||| || || | ||| | | || ||
Sbjct 1459770 CTTATGTCTCAGATGCTCCTCCAAACACTGGATGGCAAAGAGGTCAATATTCATGTCAAA 1459711
Query 162126 CTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAA 162185
||| || || ||| ||| ||| || || ||||| || | || || | ||||||
Sbjct 1459710 CTTATTGGCAGACAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCGCCAGCTCCGAA 1459654
Query 162186 CACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCAC 162245
| |||||| || |||||| |||| |||| |||| | || || | || || | | ||
Sbjct 1459653 AATGCACACCGAGCGCACGAGCACCCCGCCGCACAGTGGGTAGGGAGCACCCTTGGAAAC 1459594
Query 162246 ATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTC 162305
||| ||||| |||| |||||||| || ||||| | | || |||||||| || ||
Sbjct 1459593 ATCACCCTCAAAGTACTGCCACTTGACAAACCTGGCAACCGCGTGCATGTCAGACAAATC 1459534
Query 162306 GTACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCC 162364
|||||| | ||| | | || | ||| | || | || | ||||| | |||||||
Sbjct 1459533 GTACTTATGG-CTGGCAGGGCGTGATCCCCGGACTTCAGGAATCCTCTGGATGGTAGCCC 1459475
Query 162365 ACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTT 162424
| || | || || || ||||| || || | || ||||||||| |||| || |||
Sbjct 1459474 AGAGATACTCATCAGGGCTATATGTGTCTTGCGCCCACTCCATAAACTTTTGGATTTTTT 1459415
Query 162425 TATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAA 162484
|| | ||| | || || || ||| | || | |||||| || || |||||||
Sbjct 1459414 CATTCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAA 1459355
Query 162485 ACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCT 162544
| |||| | | ||||| || |||| | || ||||| | | |||| |
Sbjct 1459354 AAGGGGGTGTTTCCAGCGGAGGAAGCA-TTTGACAGTCCCTGTGTTTGTCAACTTTCCAT 1459296
Query 162545 CTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTT-ACTGGTAGACGGGTGTTCGGTC 162603
| |||| | | ||| ||| ||| | |||| ||||| | | ||| ||
Sbjct 1459295 TAATGACCTCAGACCGCTTTTTCCGCCTTTCT-TCTTCACTGGATGGCATCCTTTCCGTT 1459237
Query 162604 TCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTA 162663
|| || ||||| ||| ||| ||| |||| | || | |||| ||||| |||
Sbjct 1459236 TCCAGGCTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACATTTCCTAGGTTGGTTTTA 1459177
Query 162664 AGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTAC 162723
| ||||| || | || || ||||| || | || ||||| || | || | | ||||
Sbjct 1459176 ATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTCGCCCTCATT--GTAC 1459119
Query 162724 AGA--TCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGC 162781
||| |||| | ||||| || || ||||| || | |||| |||||| || || || |
Sbjct 1459118 AGAAGTCCTTCATGCAGTTGAGTTCAGCCTGAACCCAGCTCCCCGACGCATAAACCACAC 1459059
Query 162782 TCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCA 162841
||||| | |||| ||||||||||| |||||| ||| | || |||||||| | ||
Sbjct 1459058 TCTCCGATGGGCTGGCCACAAAGACATTACTGAAACAGGAAGCAATGCCCATCACTG-CA 1459000
Query 162842 GTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGG 162898
| | || | | ||| | ||| | || | || ||||| || | |||||||||
Sbjct 1458999 GCTA-AATA-GGAATCCTGGGATTTTTTGTCCGCATGAACGCAATAGAAATTCTGAGGCA 1458942
Query 162899 CGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAAT 162958
|| ||||||||||||| | || | ||| || ||||| || || |||||||||||||
Sbjct 1458941 TATAAATGGCCCTCAGTAGCCCATCAAGCATTTCGATCTTGTGATGAACCACGATAGAAT 1458882
Query 162959 ACGCTATGGGGAACTCAGCCTCCTC 162983
| ||||| || ||||| ||||| ||
Sbjct 1458881 ATGCTATTGGAAACTCTGCCTCTTC 1458857
>seq202
Length=3867970
Score = 190 bits (210), Expect = 2e-43
Identities = 237/325 (73%), Gaps = 0/325 (0%)
Strand=Plus/Plus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
||||||| || || |||| | || || || || || | ||||| ||||| || | ||
Sbjct 1652692 CATAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCATAACCAAAGGTATTGAAGAGAC 1652751
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|||| |||| ||||| ||||||| |||||| ||||| || || | || || ||| ||
Sbjct 1652752 ACATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTGATGGTTGAGTTTTGGA 1652811
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| || | |||||||||| | ||||||||| | ||||||||| || || || |
Sbjct 1652812 GTCCCAGCTCGGTAATGTTCAACTTGTCCTTGTAGGCAGGCTGGACCACCACCCCATAGC 1652871
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
| | |||||| ||||| | |||||| ||||| ||| || | |||||||| || || |
Sbjct 1652872 TGTTGCTGAAGGTGGCTACGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAA 1652931
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| | ||||| | | ||||| |||||||||||||| |||||||| || |||| |
Sbjct 1652932 TCAGGACTTCGTAGGTAGTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTATTCAGCTGCT 1652991
Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095
| ||||| || || || ||||| ||
Sbjct 1652992 CTCTTTCATCCTGGGTCACCACTTG 1653016
Score = 147 bits (162), Expect = 3e-30
Identities = 167/221 (76%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 171506 GTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTT 171565
|||||| | | ||| || |||||||||| ||| | || | ||| |||||||||| |
Sbjct 1649855 GTTTGTTTAAAGTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT---TC 1649911
Query 171566 CCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTA 171625
||||| ||| | ||||| ||||| || || || ||||||||||||||||| ||||| ||
Sbjct 1649912 CCCACCTGATTCTTAGGGTCTTTGACCTGGAGGATGCTAGTAACAGATGTGGTCCCATTT 1649971
Query 171626 CGATGTAGA-ACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATAT 171684
| || ||| || || | ||||||||||| || || || | | ||| ||||| | ||
Sbjct 1649972 GGGTG-AGACACAGTCTCTGTACTATTTTCAATCCCTGACCGAGGAACCTTCCAGGAGAT 1650030
Query 171685 AACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725
|| || ||||| | ||||| ||||||||||| |||||||
Sbjct 1650031 CACGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 1650071
>seq117
Length=5941669
Score = 123 bits (136), Expect = 3e-23
Identities = 398/607 (66%), Gaps = 17/607 (3%)
Strand=Plus/Minus
Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946
||||||||||||| ||| || | | |||||| |||| | || || | | |
Sbjct 5461264 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 5461205
Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006
| || || | || || | || || | ||| |||||||| | ||| | || | ||||
Sbjct 5461204 CTAGCTCGCTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 5461145
Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066
| || || || || || |||| || || || | ||||| | || |||| || ||
Sbjct 5461144 TCTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 5461085
Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126
||| || ||||| || || || |||||||| | || || || || | ||||| ||||
Sbjct 5461084 TGTAAAGCTTTTCTGTGATGTAATCCCTGTGGATTGAATTTTCGAAGGAAAGATAAAATT 5461025
Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184
|||| | ||||| ||| || || || | | ||| | ||| ||||| | | | |
Sbjct 5461024 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 5460967
Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243
|||||| ||| || || || ||| || ||||| ||| || || || || | |
Sbjct 5460966 CCCGTAAGTATGGATTTCAATACTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 5460908
Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302
| || |||||| || || || |||||||| || ||||| |||||||| || ||
Sbjct 5460907 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 5460853
Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361
||| | || || | | | || | || | | ||||| ||||| || ||||| ||
Sbjct 5460852 TTCAAACACGAAGGGATTTGTGCTCACTGTCAAGAAGCCATAAGGCACTTGGATATCTGA 5460793
Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419
|||||| | ||| || | || || || || | || || || | || |||| |||
Sbjct 5460792 GTCGCGGCGGTAAGTCAGAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTG--GGGA 5460735
Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479
| | | | || ||||| || |||||||| ||||| || || |||| ||| || | || |
Sbjct 5460734 GTATGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGC 5460675
Query 177480 GTAGGTA 177486
|||||
Sbjct 5460674 TGAGGTA 5460668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578380259257600
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