Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq683 125 5e-24
seq38 113 3e-20
seq407 107 1e-18
seq1 105 4e-18
seq170 102 5e-17
seq585 98.7 7e-16
seq247 86.0 4e-12
seq136 84.2 1e-11
>seq683
Length=714717
Score = 125 bits (138), Expect = 5e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| || || | ||||| || || ||| |||||| || |||||||| || |||
Sbjct 111376 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 111435
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| | ||| |||||||| |||| |||||||||||| | ||
Sbjct 111436 AGCGTGCGGCCATCCTCCAGCTATTTACCGGCAAATATCAGACGCTGCTGATCAGGTGGG 111495
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||| || ||||| |||||| | || ||||| || | |||||| || | || ||
Sbjct 111496 ATACCCTCCTTGTCTTGAATTTT-GGCTTTAACATTCTCAATGGTGTCACTGGGCTCGAC 111554
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || | | || || ||||||||||||||
Sbjct 111555 CTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 111602
>seq38
Length=10264441
Score = 113 bits (124), Expect = 3e-20
Identities = 164/228 (72%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| || || | ||||| || || ||| |||||| || |||||||| || |||
Sbjct 9540872 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 9540813
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|||||| | | || |||| ||||| |||||||| |||| ||||||||| || | ||
Sbjct 9540812 AGTGTGTGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 9540753
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701
| ||| || ||||| |||||| ||| | ||| ||| |||||| | | | | ||
Sbjct 9540752 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTCAATGGTGTCACGGGCT-CGAC 9540695
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || | | || || ||||||||||||||
Sbjct 9540694 CTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 9540647
>seq407
Length=3256691
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| || || | ||||| || || ||| |||||| || |||||||| || |||
Sbjct 904219 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 904278
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| || | | |||||| |||| ||||||||| || | ||
Sbjct 904279 AGCGTGCGGCCATCCTCCAGCTGCTGGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 904338
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701
| ||| || ||||| |||||| ||| | ||| ||| |||||| | | || ||
Sbjct 904339 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTCAATGGTGTCATTGGGCTCGAC 904397
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || || | || || ||||||||||||||
Sbjct 904398 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 904445
>seq1
Length=21314971
Score = 105 bits (116), Expect = 4e-18
Identities = 160/227 (70%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||| ||| || || | ||||| || || ||| |||||| || |||||||| || |||
Sbjct 18631156 CCATCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 18631097
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|||| || | || |||| ||||| || ||||| |||| ||||||||| || | ||
Sbjct 18631096 AGTG--CGGCCATCCTCCAGCTGTTTACCAGCAAATATCAGACGCTGCTGGTCAGGTGGG 18631039
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702
| |||||| |||| |||||| ||| | | | | |||||| || | || ||
Sbjct 18631038 ATACCTTCCTTGTATTGAATTTTGGCTTTGACATTCTTAATGGTGTCACTGGGCTCGACC 18630979
Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || || | || || ||||||||||||||
Sbjct 18630978 TCAAGGGTGATGGTCTTGCCCGTGACAGTCTTCACAAAGATCTGCAT 18630932
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| || | | ||||| || || || |||||| || |||||||| || |||
Sbjct 4712591 CCACCTCACAGGTGCAGCACCAGGTGCAGGTTGGACTCTTTCTGGATGTTGTAGTCTGAG 4712532
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||| | || |||| ||||| |||||||| |||| ||||||||| || | ||
Sbjct 4712531 AGCGTGCAGCCATCCTCCAGCTGTTTGCCGGCAAACATCAGACGCTGCTGGTCAGGTGGG 4712472
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701
| | | || ||||| |||||| ||| | ||| ||| |||||| || | || ||
Sbjct 4712471 ATAGCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTCAGTGGTGTCACTGGGCTCGAC 4712413
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || | | || || ||||||||||| ||
Sbjct 4712412 CTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGTAT 4712365
>seq170
Length=4466143
Score = 102 bits (112), Expect = 5e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
|||| || ||||| || | ||||| || |||||| ||| || || |||||||| || |
Sbjct 3882999 CACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 3883058
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || ||||| | || |||| ||||| || ||||| ||||| | |||||| || | |
Sbjct 3883059 ATAGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAG 3883118
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699
| | ||||| ||||| || || || | | | ||| |||||| || | |||
Sbjct 3883119 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCC 3883177
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| ||||| || ||||| || | || || || |||||||||||
Sbjct 3883178 ACCTCAAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3883227
Score = 95.1 bits (104), Expect = 8e-15
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| |||| | ||| | |||| || || ||| ||||||||| |||||||| || ||
Sbjct 3883229 CCCCCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAC 3883288
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| || ||||||||||| ||||| | |||||| || | ||
Sbjct 3883289 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3883348
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| || || || | || | || | |||||| || | |||||
Sbjct 3883349 ATGCCTTCCTTGTCCTGGATCTT-TGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCAC 3883407
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
|| | ||||| || || || || | || || || ||||||||||| ||
Sbjct 3883408 CTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATTGT 3883458
>seq585
Length=1056956
Score = 98.7 bits (108), Expect = 7e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | || | ||||||||| |||||| || |||||||| || ||
Sbjct 519109 CCACCTCTGAGACGGAGGACAAGGTGTAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 519168
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| ||||| | || |||| || ||||| ||||| ||||| | |||||| || | ||
Sbjct 519169 AAGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 519228
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702
| ||||| ||||| || || || | | | | |||||| || | || ||
Sbjct 519229 ATGCCTTCCTTGTCCTAGATCTTTGCCTTGACGTTCTTAATGGTGTCACTGGGCTCGACC 519288
Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || ||||| || | || || ||||||||||||||
Sbjct 519289 TCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 519335
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| | ||| | |||| ||||| ||| |||||| || |||||||| || ||
Sbjct 518881 CCACCTCGGAGACGGAGAACCAGGTGTAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 518940
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| ||||| | || |||| ||||| | |||||| ||||| | || ||| || | ||
Sbjct 518941 AAGGTGCGCCCATCTTCCAGCTGTTTCCAGGCAAAGATCAATCTCTACTGGTCAGGAGGG 519000
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701
||||| ||||| || || || | |||| ||| |||||| || | |||||
Sbjct 519001 GTGCCTTCCTTGTCCTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 519059
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| | ||| || ||||| || | || || || |||||||||||
Sbjct 519060 CTCAAGGGCGATGGTCTTACCAGTCAGTGTCTTCACGAAGATCTGCAT 519107
Score = 84.2 bits (92), Expect = 1e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
|||| || ||||| || | ||||| || |||||| ||| | || |||||||| || |
Sbjct 518651 CACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTCCTGGATGTTGTAGTCAG 518710
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || ||||| | || |||| ||||| || ||||| ||||| | |||||| || | |
Sbjct 518711 ATAGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAG 518770
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699
| ||||| ||||| || || || | | | ||| |||||| || | |||
Sbjct 518771 GGGTGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCC 518829
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | ||||| || ||||| || | || || | |||||||||||
Sbjct 518830 ACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCAAGAAGATCTGCAT 518879
>seq247
Length=3354634
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||| || || | ||||| || || ||| |||||| || |||||| | || |||
Sbjct 2998223 CCACCTTGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGCAGTCTGAG 2998282
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || | | || |||| ||||| || ||||| |||| | ||||||| || ||
Sbjct 2998283 AGACTGTGGCCATCCTCCAGCTGTTTGCCAGCAAATATCAGATGCTGCTGGTCAGATGGG 2998342
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702
| ||| || ||||| |||||| ||| | | | | |||||| || | || ||
Sbjct 2998343 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTTAATGGTGTCACTGGGCTCAACC 2998402
Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || ||| | | || | ||||||||||||||
Sbjct 2998403 TCAAGGGTGATGGTCTTGCCTTTGAGGGTCCTCACAAAGATCTGCAT 2998449
>seq136
Length=5279821
Score = 84.2 bits (92), Expect = 1e-11
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| || | | ||||| || || ||| |||||| || |||| ||| || |||
Sbjct 2782432 CCACCTCGCAGGTGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTCGTAGTCAGAG 2782373
Query 33583 AGTGTGCGT-TCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||| | | | | |||| ||||| || ||||| |||| ||||||||| || | |
Sbjct 2782372 AGAGTGTGGCTAGGC-TCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTTG 2782314
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700
| ||| || || || |||||| ||| | ||| ||| |||||| | || || |
Sbjct 2782313 GATACCCTCCTTCTCTTGAATTTTGGCTTTGA-CATTCTCAGTGGTGTCATTGGACTCGA 2782255
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| | || ||||| || || || | | ||||| ||||||||||||||
Sbjct 2782254 CCTAAAGAGTGATGGTCTTGCCCATGAGGGTTTTCACAAAGATCTGCAT 2782206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328675332491520
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