Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq683 125 5e-24 seq38 113 3e-20 seq407 107 1e-18 seq1 105 4e-18 seq170 102 5e-17 seq585 98.7 7e-16 seq247 86.0 4e-12 seq136 84.2 1e-11 >seq683 Length=714717 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | ||||| || || ||| |||||| || |||||||| || ||| Sbjct 111376 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 111435 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| | ||| |||||||| |||| |||||||||||| | || Sbjct 111436 AGCGTGCGGCCATCCTCCAGCTATTTACCGGCAAATATCAGACGCTGCTGATCAGGTGGG 111495 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| | || ||||| || | |||||| || | || || Sbjct 111496 ATACCCTCCTTGTCTTGAATTTT-GGCTTTAACATTCTCAATGGTGTCACTGGGCTCGAC 111554 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || | | || || |||||||||||||| Sbjct 111555 CTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 111602 >seq38 Length=10264441 Score = 113 bits (124), Expect = 3e-20 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | ||||| || || ||| |||||| || |||||||| || ||| Sbjct 9540872 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 9540813 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||| | | || |||| ||||| |||||||| |||| ||||||||| || | || Sbjct 9540812 AGTGTGTGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 9540753 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | ||| ||| |||||| | | | | || Sbjct 9540752 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTCAATGGTGTCACGGGCT-CGAC 9540695 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || | | || || |||||||||||||| Sbjct 9540694 CTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 9540647 >seq407 Length=3256691 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | ||||| || || ||| |||||| || |||||||| || ||| Sbjct 904219 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 904278 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || | | |||||| |||| ||||||||| || | || Sbjct 904279 AGCGTGCGGCCATCCTCCAGCTGCTGGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 904338 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | ||| ||| |||||| | | || || Sbjct 904339 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTCAATGGTGTCATTGGGCTCGAC 904397 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 904398 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 904445 >seq1 Length=21314971 Score = 105 bits (116), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||| ||| || || | ||||| || || ||| |||||| || |||||||| || ||| Sbjct 18631156 CCATCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 18631097 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||| || | || |||| ||||| || ||||| |||| ||||||||| || | || Sbjct 18631096 AGTG--CGGCCATCCTCCAGCTGTTTACCAGCAAATATCAGACGCTGCTGGTCAGGTGGG 18631039 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | |||||| |||| |||||| ||| | | | | |||||| || | || || Sbjct 18631038 ATACCTTCCTTGTATTGAATTTTGGCTTTGACATTCTTAATGGTGTCACTGGGCTCGACC 18630979 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 18630978 TCAAGGGTGATGGTCTTGCCCGTGACAGTCTTCACAAAGATCTGCAT 18630932 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || | | ||||| || || || |||||| || |||||||| || ||| Sbjct 4712591 CCACCTCACAGGTGCAGCACCAGGTGCAGGTTGGACTCTTTCTGGATGTTGTAGTCTGAG 4712532 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||| | || |||| ||||| |||||||| |||| ||||||||| || | || Sbjct 4712531 AGCGTGCAGCCATCCTCCAGCTGTTTGCCGGCAAACATCAGACGCTGCTGGTCAGGTGGG 4712472 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | | | || ||||| |||||| ||| | ||| ||| |||||| || | || || Sbjct 4712471 ATAGCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTCAGTGGTGTCACTGGGCTCGAC 4712413 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || | | || || ||||||||||| || Sbjct 4712412 CTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGTAT 4712365 >seq170 Length=4466143 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | ||||| || |||||| ||| || || |||||||| || | Sbjct 3882999 CACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 3883058 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| ||||| || ||||| ||||| | |||||| || | | Sbjct 3883059 ATAGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAG 3883118 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || || | | | ||| |||||| || | ||| Sbjct 3883119 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCC 3883177 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || ||||| || | || || || ||||||||||| Sbjct 3883178 ACCTCAAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3883227 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | |||| || || ||| ||||||||| |||||||| || || Sbjct 3883229 CCCCCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAC 3883288 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || ||||||||||| ||||| | |||||| || | || Sbjct 3883289 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3883348 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | || | || | |||||| || | ||||| Sbjct 3883349 ATGCCTTCCTTGTCCTGGATCTT-TGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCAC 3883407 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || || || || | || || || ||||||||||| || Sbjct 3883408 CTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATTGT 3883458 >seq585 Length=1056956 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | || | ||||||||| |||||| || |||||||| || || Sbjct 519109 CCACCTCTGAGACGGAGGACAAGGTGTAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 519168 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || |||| || ||||| ||||| ||||| | |||||| || | || Sbjct 519169 AAGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 519228 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | ||||| ||||| || || || | | | | |||||| || | || || Sbjct 519229 ATGCCTTCCTTGTCCTAGATCTTTGCCTTGACGTTCTTAATGGTGTCACTGGGCTCGACC 519288 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || ||||| || | || || |||||||||||||| Sbjct 519289 TCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 519335 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | |||| ||||| ||| |||||| || |||||||| || || Sbjct 518881 CCACCTCGGAGACGGAGAACCAGGTGTAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 518940 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || |||| ||||| | |||||| ||||| | || ||| || | || Sbjct 518941 AAGGTGCGCCCATCTTCCAGCTGTTTCCAGGCAAAGATCAATCTCTACTGGTCAGGAGGG 519000 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 ||||| ||||| || || || | |||| ||| |||||| || | ||||| Sbjct 519001 GTGCCTTCCTTGTCCTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 519059 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| | ||| || ||||| || | || || || ||||||||||| Sbjct 519060 CTCAAGGGCGATGGTCTTACCAGTCAGTGTCTTCACGAAGATCTGCAT 519107 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | ||||| || |||||| ||| | || |||||||| || | Sbjct 518651 CACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTCCTGGATGTTGTAGTCAG 518710 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| ||||| || ||||| ||||| | |||||| || | | Sbjct 518711 ATAGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAG 518770 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | ||||| ||||| || || || | | | ||| |||||| || | ||| Sbjct 518771 GGGTGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCC 518829 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || ||||| || | || || | ||||||||||| Sbjct 518830 ACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCAAGAAGATCTGCAT 518879 >seq247 Length=3354634 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||| || || | ||||| || || ||| |||||| || |||||| | || ||| Sbjct 2998223 CCACCTTGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGCAGTCTGAG 2998282 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || |||| ||||| || ||||| |||| | ||||||| || || Sbjct 2998283 AGACTGTGGCCATCCTCCAGCTGTTTGCCAGCAAATATCAGATGCTGCTGGTCAGATGGG 2998342 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | ||| || ||||| |||||| ||| | | | | |||||| || | || || Sbjct 2998343 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTTAATGGTGTCACTGGGCTCAACC 2998402 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || ||| | | || | |||||||||||||| Sbjct 2998403 TCAAGGGTGATGGTCTTGCCTTTGAGGGTCCTCACAAAGATCTGCAT 2998449 >seq136 Length=5279821 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || | | ||||| || || ||| |||||| || |||| ||| || ||| Sbjct 2782432 CCACCTCGCAGGTGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTCGTAGTCAGAG 2782373 Query 33583 AGTGTGCGT-TCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||| | | | | |||| ||||| || ||||| |||| ||||||||| || | | Sbjct 2782372 AGAGTGTGGCTAGGC-TCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTTG 2782314 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||| || || || |||||| ||| | ||| ||| |||||| | || || | Sbjct 2782313 GATACCCTCCTTCTCTTGAATTTTGGCTTTGA-CATTCTCAGTGGTGTCATTGGACTCGA 2782255 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | | || ||||| || || || | | ||||| |||||||||||||| Sbjct 2782254 CCTAAAGAGTGATGGTCTTGCCCATGAGGGTTTTCACAAAGATCTGCAT 2782206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328675332491520