Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq170 93.3 4e-14 seq80 91.5 1e-13 seq585 82.4 7e-11 >seq170 Length=4466143 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||| ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 3883262 GACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCA 3883321 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| |||||||| || || || ||| || | Sbjct 3883322 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACG 3883381 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| |||| || | || || || ||||| || || Sbjct 3883382 TTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTC 3883441 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 3883442 ACGAAGATCTGCAT 3883455 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | ||||| || || ||||||||||| | ||| || Sbjct 3883009 CAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCG 3883068 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| |||||||| || | | |||| | | ||| || || ||||| |||||||| Sbjct 3883069 CCCATCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTC 3883128 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || || | | || | || || | |||||||| || | || Sbjct 3883129 CTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGT 3883188 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || ||||| ||||| || || | ||| |||||||| Sbjct 3883189 GATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3883227 >seq80 Length=8459403 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| || ||||| | |||||||||||||||||| ||| ||||| || ||||| | Sbjct 1287415 TGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 1287474 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| |||||||| || | ||||| ||||||| ||||| Sbjct 1287475 TGCTCTTCCGATTACAGGAATCTTTATAGAGCATATACGG 1287514 >seq585 Length=1056956 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| |||| | |||||||| || ||||||||||| || ||| ||| |||||| Sbjct 518898 AACCAGGTGTAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATCTTC 518957 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||| | || | |||| | | || || || ||||| ||||||| || || Sbjct 518958 CAGCTGTTTCCAGGCAAAGATCAATCTCTACTGGTCAGGAGGGGTGCCTTCCTTGTCCTG 519017 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || ||| || | | || | || || | |||||||| || | | | || || Sbjct 519018 GATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGCGATGGTCTT 519077 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||| || || | ||| |||||||| Sbjct 519078 ACCAGTCAGTGTCTTCACGAAGATCTGCAT 519107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476568567128160