Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq170 93.3 4e-14
seq80 91.5 1e-13
seq585 82.4 7e-11
>seq170
Length=4466143
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||||||||| ||||||||||| || ||| ||| |||||| ||||| || |||| |
Sbjct 3883262 GACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCA 3883321
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| | | ||| || || ||||| |||||||| || || || ||| || |
Sbjct 3883322 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACG 3883381
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | |||||||| |||| || | || || || ||||| || ||
Sbjct 3883382 TTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTC 3883441
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 3883442 ACGAAGATCTGCAT 3883455
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
|||||||| ||||| || | | ||||| || || ||||||||||| | ||| ||
Sbjct 3883009 CAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCG 3883068
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
| |||||| |||||||| || | | |||| | | ||| || || ||||| ||||||||
Sbjct 3883069 CCCATCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTC 3883128
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
|| || || || || | | || | || || | |||||||| || | ||
Sbjct 3883129 CTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGT 3883188
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| || ||||| ||||| || || | ||| ||||||||
Sbjct 3883189 GATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3883227
>seq80
Length=8459403
Score = 91.5 bits (100), Expect = 1e-13
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562
|||||| || ||||| | |||||||||||||||||| ||| ||||| || ||||| |
Sbjct 1287415 TGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 1287474
Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602
|||| |||||||| || | ||||| ||||||| |||||
Sbjct 1287475 TGCTCTTCCGATTACAGGAATCTTTATAGAGCATATACGG 1287514
>seq585
Length=1056956
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
||||| |||| | |||||||| || ||||||||||| || ||| ||| ||||||
Sbjct 518898 AACCAGGTGTAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATCTTC 518957
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
|||||||| | || | |||| | | || || || ||||| ||||||| || ||
Sbjct 518958 CAGCTGTTTCCAGGCAAAGATCAATCTCTACTGGTCAGGAGGGGTGCCTTCCTTGTCCTG 519017
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
|| ||| || | | || | || || | |||||||| || | | | || ||
Sbjct 519018 GATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGCGATGGTCTT 519077
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||||||| || || | ||| ||||||||
Sbjct 519078 ACCAGTCAGTGTCTTCACGAAGATCTGCAT 519107
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476568567128160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |