Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq919 107 6e-20
seq794 104 7e-19
seq525 98.7 3e-17
seq254 98.7 3e-17
seq170 98.7 3e-17
seq159 98.7 3e-17
seq418 93.3 1e-15
seq99 93.3 1e-15
>seq919
Length=361068
Score = 107 bits (118), Expect = 6e-20
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 106334 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 106393
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 106394 TCCCGGGTTTCGGC 106407
>seq794
Length=373274
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 215221 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 215280
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 215281 CCGGGTTTCGGC 215292
Score = 87.8 bits (96), Expect = 6e-14
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 227882 GGCCGAAGTAGCTCAGTTGGGAGAACATTAGACTGAAGATCTAAAGGTCCCGGGTT 227937
Score = 80.6 bits (88), Expect = 8e-12
Identities = 61/72 (85%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||| |||| |||||||| |||||||||||||||| | |
Sbjct 81588 GCCGAAATAGCTCAGTTGGGAGACTGTTAGGCTGAAGATTTAAAGGTCCCTGGTTCGATC 81647
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 81648 CCGGGTTTCGGC 81659
>seq525
Length=1360352
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 793547 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 793606
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 793607 CCGGGTTTCGGC 793618
>seq254
Length=3233133
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1061403 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1061462
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1061463 CCGGGTTTCGGC 1061474
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1070186 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1070245
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1070246 CCGGGTTTCGGC 1070257
>seq170
Length=4466143
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 3905998 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3905939
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 3905938 CCGGGTTTCGGC 3905927
>seq159
Length=4663390
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 3398095 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3398036
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 3398035 CCGGGTTTCGGC 3398024
>seq418
Length=1903277
Score = 93.3 bits (102), Expect = 1e-15
Identities = 62/69 (90%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1621357 GCTGAAATAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCGATT 1621298
Query 2829 CCGGGCTTC 2837
||| | |||
Sbjct 1621297 CCGAGTTTC 1621289
>seq99
Length=6617370
Score = 93.3 bits (102), Expect = 1e-15
Identities = 63/71 (89%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| |||||||||||| |||| ||||||||||||||| |||||||| |||||||| |
Sbjct 40806 GCTGAAATAGCTCAGTTGGAAGAGTATTAGACTGAAGATCCAAAGGTCCTTGGTTCAATC 40747
Query 2829 CCGGGCTTCAG 2839
|| || |||||
Sbjct 40746 CCAGGTTTCAG 40736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15848359471620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |