Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq919 107 6e-20 seq794 104 7e-19 seq525 98.7 3e-17 seq254 98.7 3e-17 seq170 98.7 3e-17 seq159 98.7 3e-17 seq418 93.3 1e-15 seq99 93.3 1e-15 >seq919 Length=361068 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 106334 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 106393 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 106394 TCCCGGGTTTCGGC 106407 >seq794 Length=373274 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 215221 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 215280 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 215281 CCGGGTTTCGGC 215292 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 ||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 227882 GGCCGAAGTAGCTCAGTTGGGAGAACATTAGACTGAAGATCTAAAGGTCCCGGGTT 227937 Score = 80.6 bits (88), Expect = 8e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||| |||| |||||||| |||||||||||||||| | | Sbjct 81588 GCCGAAATAGCTCAGTTGGGAGACTGTTAGGCTGAAGATTTAAAGGTCCCTGGTTCGATC 81647 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 81648 CCGGGTTTCGGC 81659 >seq525 Length=1360352 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 793547 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 793606 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 793607 CCGGGTTTCGGC 793618 >seq254 Length=3233133 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1061403 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1061462 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1061463 CCGGGTTTCGGC 1061474 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1070186 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1070245 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1070246 CCGGGTTTCGGC 1070257 >seq170 Length=4466143 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3905998 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3905939 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3905938 CCGGGTTTCGGC 3905927 >seq159 Length=4663390 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3398095 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3398036 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3398035 CCGGGTTTCGGC 3398024 >seq418 Length=1903277 Score = 93.3 bits (102), Expect = 1e-15 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1621357 GCTGAAATAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCGATT 1621298 Query 2829 CCGGGCTTC 2837 ||| | ||| Sbjct 1621297 CCGAGTTTC 1621289 >seq99 Length=6617370 Score = 93.3 bits (102), Expect = 1e-15 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||| |||| ||||||||||||||| |||||||| |||||||| | Sbjct 40806 GCTGAAATAGCTCAGTTGGAAGAGTATTAGACTGAAGATCCAAAGGTCCTTGGTTCAATC 40747 Query 2829 CCGGGCTTCAG 2839 || || ||||| Sbjct 40746 CCAGGTTTCAG 40736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848359471620