Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq599 291 9e-74
seq202 257 2e-63
seq13 158 1e-33
seq39 136 5e-27
seq1 125 8e-24
>seq599
Length=1005688
Score = 291 bits (322), Expect = 9e-74
Identities = 512/741 (69%), Gaps = 6/741 (1%)
Strand=Plus/Minus
Query 146826 AAAATCTTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGG 146885
||| ||||| || |||| || || || | ||| || | | | |||||||||||| ||
Sbjct 754635 AAAGTCTTCAGCTTTGAAGTCATCAATTTTCTCAACTTGTCGAAGAATCTTGAGCTTTGG 754576
Query 146886 GAAGGGTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAG 146943
||| |||| ||| | || || |||||||||||||| |||| | ||| || |||||
Sbjct 754575 GAAAGGTCTGGGTT--CTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGTAA 754518
Query 146944 ACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCC 147003
| || || || |||| || || |||||||| || ||||| ||||| || | ||| ||
Sbjct 754517 ATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCG 754458
Query 147004 ACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCC 147063
| || ||| ||||||| | ||||||||| ||||||| || || || |||||||||||
Sbjct 754457 ATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGTCT 754398
Query 147064 CCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGG 147123
|| || ||||||| ||||||||| || ||||| || | || |||| |||||||| |||
Sbjct 754397 CCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCAGAGG 754338
Query 147124 ATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACC 147183
||||| || ||||||||||| || || || || ||||| || | | |
Sbjct 754337 GCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGATG 754278
Query 147184 AGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACG 147243
| | ||| || ||||| | || || || | || | || ||||| ||
Sbjct 754277 ATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGTAGTTGGTCAACT 754218
Query 147244 CCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGG 147303
|| || || || | || | || ||| |||||||| ||||||||||||
Sbjct 754217 CCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGG 754158
Query 147304 AAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGA 147363
||||| || ||||| |||| ||| || | |||| ||||| ||| | | |||
Sbjct 754157 AAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGA 754098
Query 147364 AACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAG 147423
|| || |||| || | ||| |||||||| ||||||||||| || ||||| ||||
Sbjct 754097 AAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCT 754038
Query 147424 TCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGAC-CCT 147482
| | ||| ||| ||| || || |||| |||||||||||| ||| |||| || || |
Sbjct 754037 TTC-TGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACACAACG 753979
Query 147483 CTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTCGCCTGGTCCCCAAACAC 147542
||||| |||||||| || || | || ||||| || | |||||| || |||||
Sbjct 753978 TTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACAC 753919
Query 147543 AGACAGCGTGCCCGTGCCCGT 147563
||||| || || ||||| ||
Sbjct 753918 CGACAGGGTCCCGGTGCCGGT 753898
>seq202
Length=3867970
Score = 257 bits (284), Expect = 2e-63
Identities = 250/322 (78%), Gaps = 0/322 (0%)
Strand=Plus/Minus
Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128
|| ||||||||||||||||| || | || |||||| ||||| || ||| | | ||||||
Sbjct 1653016 CAAGTGGTGACCCAGGATGAAAGAGAGCAGCTGAATACGCCTGCTTCCTTAAGATGCTCT 1652957
Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188
||||| ||| | | || || |||||||| || |||||||||| || | | |||
Sbjct 1652956 CTGCAAACTACCTACGAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 1652897
Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248
|| ||| | || || ||||| | | ||||||||||||||||| || || ||||||
Sbjct 1652896 GAAAACGTAGCCACCTTCAGCAACAGCTATGGGGTGGTGGTCCAGCCTGCCTACAAGGAC 1652837
Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308
||| | ||||| ||| |||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 1652836 AAGTTGAACATTACCGAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATACCACC 1652777
Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368
| ||||| || ||||| |||| || ||||| || |||||||| | |||||| |||||
Sbjct 1652776 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTATGGGAAGATCTCA 1652717
Query 171369 GGGGTGGCCTGCCTCACCCTCT 171390
|| ||||||||||||||||
Sbjct 1652716 GGAACAGCCTGCCTCACCCTCT 1652695
>seq13
Length=13416947
Score = 158 bits (174), Expect = 1e-33
Identities = 134/165 (81%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| ||||| || | ||| || | |||||| |||||||| | ||||||||| ||||||||
Sbjct 11482520 CTTCAGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAA 11482461
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
|| || || ||||||||||| || || ||||||||||||||||| || ||||| ||||
Sbjct 11482460 AGGCACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTT 11482401
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146
||||||| |||||||| ||| ||||| || |||||||||||
Sbjct 11482400 CACCACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 11482356
Score = 91.5 bits (100), Expect = 2e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342
|||||||| ||||||||||||||||| || ||||| |||| ||| || | ||||
Sbjct 11478291 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCG 11478232
Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402
||||| ||| | | ||||| || |||| || | ||| |||||||| |||||||
Sbjct 11478231 GAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCC 11478172
Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435
|||| || ||||| |||| | ||||| |||
Sbjct 11478171 TTGGAAGACAGCTCTTTAGCATTTGTGGATCCC 11478139
>seq39
Length=11376263
Score = 136 bits (150), Expect = 5e-27
Identities = 129/167 (77%), Gaps = 12/167 (7%)
Strand=Plus/Minus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| |||||||| |||||||| ||||||||| ||||||||||||
Sbjct 4485666 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 4485607
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| || || ||||| || | ||| ||| | |||| ||| || ||||
Sbjct 4485606 TGCCCCAAGCTGAGAACCA------------TGACCCAGACGTCAAGGTGCACGTGAACT 4485559
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| |||||||||||||| |||||| | | |||||||||| || |||
Sbjct 4485558 CCCTGGGGGAAAAGCTGAAGACCTTCCGGCTGAGGCTGCGACGCTGT 4485512
Score = 89.7 bits (98), Expect = 6e-13
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 178081 AGTCTGAAAACAATTGCACTCACTTTCCAACCAGTTTGCCTCACATGCTCCATGAGCTCC 178140
||||||| |||| ||||| ||||||||| |||| ||||||||||||| | |||||||
Sbjct 4486975 AGTCTGAGAACAGCTGCACCCACTTTCCAGGCAGTCTGCCTCACATGCTTCGAGAGCTCC 4486916
Query 178141 GGGCCGCTTTTAGCAGAGTAAAGACttttttt 178172
| | || || |||||||| |||||||| |||
Sbjct 4486915 GAGTTGCCTTCAGCAGAGTGAAGACTTTCTTT 4486884
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| || || || |||||||| |||||||||||||| || || || ||||||
Sbjct 4483328 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCGACTACA 4483269
Query 178522 TAGAAGCTTACATGACAA 178539
||||||| ||||||||||
Sbjct 4483268 TAGAAGCCTACATGACAA 4483251
>seq1
Length=21314971
Score = 125 bits (138), Expect = 8e-24
Identities = 535/840 (64%), Gaps = 33/840 (4%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| |||||||| | | || || | ||||||| ||||| | | |||||||
Sbjct 7881108 GTACTCCCTGGTGTTCATCGTGGGCCTCTTGGGCAATGTGTTGGTGGTGGTGATCCTCAT 7881049
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
||| |||| ||||||| | || |||||||| |||| |||| ||||||||||| || |||
Sbjct 7881048 AAAATACAGGAGGCTCCGAATTATGACCAATATCTACCTGCTCAACCTGGCCATTTCTGA 7880989
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
|||||| | | |||||||| || || ||||| |||| || | ||| |||
Sbjct 7880988 CCTGCTTTTCCTCTTCACCCTTCCATTCTGGATCCACT--ATGTCATGTGGA----GTGA 7880935
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849
|||| | ||| |||||||||| | || ||| ||| | || | ||
Sbjct 7880934 CTGGGTTTTTGGCCATGGCATGTGTAAGGTCATCTCGGGGTTTTATTTCACGGGCTTATA 7880875
Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909
|||| || | || ||||||||| |||| | |||||||| || || |||| ||||
Sbjct 7880874 TGGCGAGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCCATTGTCCACGC 7880815
Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969
||| | | | | |||| || | | || || || ||||| || | | ||
Sbjct 7880814 CGTGTTTGCCCTTCGAGCCCGCACTGTCACTTTTGGTGTCATCACCAGCATCGTCACTTG 7880755
Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATG---- 9025
| ||||| ||| | | | | | || || |||||||| | || || | ||||
Sbjct 7880754 GGGCCTGGCAGTGCTAGCAGCTCTCCCTGAATTTATCTTCCAAGAGACCGAAAATGTTCT 7880695
Query 9026 -CCACAG-------GCAAGGGGGTCTGCC--AAGCCTCCTACACAGACTTTTGGAAGGGG 9075
| | || |||| || | || || | |||| | ||||||
Sbjct 7880694 TCAAGAGTCTTATTGCAACCCTGTGTACCCTGAGGATGAAGCACAAA--GCTGGAAGCAT 7880637
Query 9076 GTTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTC 9135
| ||| | || || | ||| | ||| || ||| |||| | |||||| ||
Sbjct 7880636 TTCTATGCTCTGAGAATAAACATCTTGGTTCTCGCTCTCCCTCTGCTCGTTATGGCCATC 7880577
Query 9136 TGCTACTGGAAAATCATCAAGGTCCTCCTCAAGGCCCACAACAGGTCGAGAAACCTGC-A 9194
|||||| ||||||||| || || ||| || ||| | | ||| | | |
Sbjct 7880576 TGCTACACAGGAATCATCAAAACACTGCTGAAGTGCCCCAA----TAAAAAAAAGTACAA 7880521
Query 9195 CGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAA 9254
||| || |||||||| |||| ||||| | | ||| | || |||| ||||||||
Sbjct 7880520 GGCCATCCGACTCATTTTTGTCATCATGGTGGTGTTTTTCATTTTCTGGACACCCTACAA 7880461
Query 9255 CGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCGCG 9314
| | ||| || | | |||| |||| || | ||||| |||||| | ||
Sbjct 7880460 CCTGGCTCTCCTTCTCTATACCTTTCAAGCCACCTTGTTTGGATATGACTGTAA---GCA 7880404
Query 9315 GCGCAGGG---TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTG 9371
| ||| || ||||| | ||||| ||||| | || ||||||||| | ||||||||||
Sbjct 7880403 GAGCAAGGATCTGGACCTAGCCCTACTGGTGACGCAGGTGATCGCCTACTCCCACTGCTG 7880344
Query 9372 CGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTCAGGACTT 9431
||| ||||| || |||||||| || || || || | ||||| || |||| || ||||
Sbjct 7880343 CGTTAACCCGGTAATCTACGCCTTCGTTGGAGAGAGGTTCCGGAAGTACCTGCACCACTT 7880284
Score = 107 bits (118), Expect = 2e-18
Identities = 121/162 (75%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| |||| ||| | |||| || ||||||| ||||||| || | ||||| |
Sbjct 7931371 GTACTCCTTGGTATTTGTCATTGGCCTGGTTGGCAACATCCTGGTGGTCGTGGTCCTTGT 7931430
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
| ||||||||||||| | |||||||| ||||| ||| || ||||||||| || |||
Sbjct 7931431 GCAATACAAGAGGCTCAAAAACATGACCAGCATCTACCTCTTGAACCTGGCCATTTCTGA 7931490
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA 8771
|||||| | | ||||| || ||||| |||||| || |||
Sbjct 7931491 CCTGCTCTTCCTGTTCACGCTTCCCTTCTGGATTAGCTACCA 7931532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583435806998400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |