Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq599 291 9e-74 seq202 257 2e-63 seq13 158 1e-33 seq39 136 5e-27 seq1 125 8e-24 >seq599 Length=1005688 Score = 291 bits (322), Expect = 9e-74 Identities = 512/741 (69%), Gaps = 6/741 (1%) Strand=Plus/Minus Query 146826 AAAATCTTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGG 146885 ||| ||||| || |||| || || || | ||| || | | | |||||||||||| || Sbjct 754635 AAAGTCTTCAGCTTTGAAGTCATCAATTTTCTCAACTTGTCGAAGAATCTTGAGCTTTGG 754576 Query 146886 GAAGGGTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAG 146943 ||| |||| ||| | || || |||||||||||||| |||| | ||| || ||||| Sbjct 754575 GAAAGGTCTGGGTT--CTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGTAA 754518 Query 146944 ACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCC 147003 | || || || |||| || || |||||||| || ||||| ||||| || | ||| || Sbjct 754517 ATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCG 754458 Query 147004 ACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCC 147063 | || ||| ||||||| | ||||||||| ||||||| || || || ||||||||||| Sbjct 754457 ATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGTCT 754398 Query 147064 CCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGG 147123 || || ||||||| ||||||||| || ||||| || | || |||| |||||||| ||| Sbjct 754397 CCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCAGAGG 754338 Query 147124 ATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACC 147183 ||||| || ||||||||||| || || || || ||||| || | | | Sbjct 754337 GCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGATG 754278 Query 147184 AGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACG 147243 | | ||| || ||||| | || || || | || | || ||||| || Sbjct 754277 ATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGTAGTTGGTCAACT 754218 Query 147244 CCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGG 147303 || || || || | || | || ||| |||||||| |||||||||||| Sbjct 754217 CCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGG 754158 Query 147304 AAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGA 147363 ||||| || ||||| |||| ||| || | |||| ||||| ||| | | ||| Sbjct 754157 AAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGA 754098 Query 147364 AACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAG 147423 || || |||| || | ||| |||||||| ||||||||||| || ||||| |||| Sbjct 754097 AAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCT 754038 Query 147424 TCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGAC-CCT 147482 | | ||| ||| ||| || || |||| |||||||||||| ||| |||| || || | Sbjct 754037 TTC-TGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACACAACG 753979 Query 147483 CTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTCGCCTGGTCCCCAAACAC 147542 ||||| |||||||| || || | || ||||| || | |||||| || ||||| Sbjct 753978 TTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACAC 753919 Query 147543 AGACAGCGTGCCCGTGCCCGT 147563 ||||| || || ||||| || Sbjct 753918 CGACAGGGTCCCGGTGCCGGT 753898 >seq202 Length=3867970 Score = 257 bits (284), Expect = 2e-63 Identities = 250/322 (78%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || ||||||||||||||||| || | || |||||| ||||| || ||| | | |||||| Sbjct 1653016 CAAGTGGTGACCCAGGATGAAAGAGAGCAGCTGAATACGCCTGCTTCCTTAAGATGCTCT 1652957 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| ||| | | || || |||||||| || |||||||||| || | | ||| Sbjct 1652956 CTGCAAACTACCTACGAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 1652897 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || ||| | || || ||||| | | ||||||||||||||||| || || |||||| Sbjct 1652896 GAAAACGTAGCCACCTTCAGCAACAGCTATGGGGTGGTGGTCCAGCCTGCCTACAAGGAC 1652837 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 ||| | ||||| ||| |||| ||||||||||||||||||||||| || |||||||||||| Sbjct 1652836 AAGTTGAACATTACCGAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATACCACC 1652777 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||| |||| || ||||| || |||||||| | |||||| ||||| Sbjct 1652776 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTATGGGAAGATCTCA 1652717 Query 171369 GGGGTGGCCTGCCTCACCCTCT 171390 || |||||||||||||||| Sbjct 1652716 GGAACAGCCTGCCTCACCCTCT 1652695 >seq13 Length=13416947 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 11482520 CTTCAGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAA 11482461 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || ||||||||||| || || ||||||||||||||||| || ||||| |||| Sbjct 11482460 AGGCACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTT 11482401 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| ||| ||||| || ||||||||||| Sbjct 11482400 CACCACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 11482356 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| |||| ||| || | |||| Sbjct 11478291 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCG 11478232 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | ||||| || |||| || | ||| |||||||| ||||||| Sbjct 11478231 GAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCC 11478172 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| || ||||| |||| | ||||| ||| Sbjct 11478171 TTGGAAGACAGCTCTTTAGCATTTGTGGATCCC 11478139 >seq39 Length=11376263 Score = 136 bits (150), Expect = 5e-27 Identities = 129/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 4485666 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 4485607 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| || | ||| ||| | |||| ||| || |||| Sbjct 4485606 TGCCCCAAGCTGAGAACCA------------TGACCCAGACGTCAAGGTGCACGTGAACT 4485559 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| |||||| | | |||||||||| || ||| Sbjct 4485558 CCCTGGGGGAAAAGCTGAAGACCTTCCGGCTGAGGCTGCGACGCTGT 4485512 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 178081 AGTCTGAAAACAATTGCACTCACTTTCCAACCAGTTTGCCTCACATGCTCCATGAGCTCC 178140 ||||||| |||| ||||| ||||||||| |||| ||||||||||||| | ||||||| Sbjct 4486975 AGTCTGAGAACAGCTGCACCCACTTTCCAGGCAGTCTGCCTCACATGCTTCGAGAGCTCC 4486916 Query 178141 GGGCCGCTTTTAGCAGAGTAAAGACttttttt 178172 | | || || |||||||| |||||||| ||| Sbjct 4486915 GAGTTGCCTTCAGCAGAGTGAAGACTTTCTTT 4486884 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||||||||| || || || |||||| Sbjct 4483328 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCGACTACA 4483269 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 4483268 TAGAAGCCTACATGACAA 4483251 >seq1 Length=21314971 Score = 125 bits (138), Expect = 8e-24 Identities = 535/840 (64%), Gaps = 33/840 (4%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | | || || | ||||||| ||||| | | ||||||| Sbjct 7881108 GTACTCCCTGGTGTTCATCGTGGGCCTCTTGGGCAATGTGTTGGTGGTGGTGATCCTCAT 7881049 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||| ||||||| | || |||||||| |||| |||| ||||||||||| || ||| Sbjct 7881048 AAAATACAGGAGGCTCCGAATTATGACCAATATCTACCTGCTCAACCTGGCCATTTCTGA 7880989 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | |||||||| || || ||||| |||| || | ||| ||| Sbjct 7880988 CCTGCTTTTCCTCTTCACCCTTCCATTCTGGATCCACT--ATGTCATGTGGA----GTGA 7880935 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| | ||| |||||||||| | || ||| ||| | || | || Sbjct 7880934 CTGGGTTTTTGGCCATGGCATGTGTAAGGTCATCTCGGGGTTTTATTTCACGGGCTTATA 7880875 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||| || | || ||||||||| |||| | |||||||| || || |||| |||| Sbjct 7880874 TGGCGAGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCCATTGTCCACGC 7880815 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | | | |||| || | | || || || ||||| || | | || Sbjct 7880814 CGTGTTTGCCCTTCGAGCCCGCACTGTCACTTTTGGTGTCATCACCAGCATCGTCACTTG 7880755 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATG---- 9025 | ||||| ||| | | | | | || || |||||||| | || || | |||| Sbjct 7880754 GGGCCTGGCAGTGCTAGCAGCTCTCCCTGAATTTATCTTCCAAGAGACCGAAAATGTTCT 7880695 Query 9026 -CCACAG-------GCAAGGGGGTCTGCC--AAGCCTCCTACACAGACTTTTGGAAGGGG 9075 | | || |||| || | || || | |||| | |||||| Sbjct 7880694 TCAAGAGTCTTATTGCAACCCTGTGTACCCTGAGGATGAAGCACAAA--GCTGGAAGCAT 7880637 Query 9076 GTTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTC 9135 | ||| | || || | ||| | ||| || ||| |||| | |||||| || Sbjct 7880636 TTCTATGCTCTGAGAATAAACATCTTGGTTCTCGCTCTCCCTCTGCTCGTTATGGCCATC 7880577 Query 9136 TGCTACTGGAAAATCATCAAGGTCCTCCTCAAGGCCCACAACAGGTCGAGAAACCTGC-A 9194 |||||| ||||||||| || || ||| || ||| | | ||| | | | Sbjct 7880576 TGCTACACAGGAATCATCAAAACACTGCTGAAGTGCCCCAA----TAAAAAAAAGTACAA 7880521 Query 9195 CGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAA 9254 ||| || |||||||| |||| ||||| | | ||| | || |||| |||||||| Sbjct 7880520 GGCCATCCGACTCATTTTTGTCATCATGGTGGTGTTTTTCATTTTCTGGACACCCTACAA 7880461 Query 9255 CGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCGCG 9314 | | ||| || | | |||| |||| || | ||||| |||||| | || Sbjct 7880460 CCTGGCTCTCCTTCTCTATACCTTTCAAGCCACCTTGTTTGGATATGACTGTAA---GCA 7880404 Query 9315 GCGCAGGG---TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTG 9371 | ||| || ||||| | ||||| ||||| | || ||||||||| | |||||||||| Sbjct 7880403 GAGCAAGGATCTGGACCTAGCCCTACTGGTGACGCAGGTGATCGCCTACTCCCACTGCTG 7880344 Query 9372 CGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTCAGGACTT 9431 ||| ||||| || |||||||| || || || || | ||||| || |||| || |||| Sbjct 7880343 CGTTAACCCGGTAATCTACGCCTTCGTTGGAGAGAGGTTCCGGAAGTACCTGCACCACTT 7880284 Score = 107 bits (118), Expect = 2e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||| ||| | |||| || ||||||| ||||||| || | ||||| | Sbjct 7931371 GTACTCCTTGGTATTTGTCATTGGCCTGGTTGGCAACATCCTGGTGGTCGTGGTCCTTGT 7931430 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||| ||||| ||| || ||||||||| || ||| Sbjct 7931431 GCAATACAAGAGGCTCAAAAACATGACCAGCATCTACCTCTTGAACCTGGCCATTTCTGA 7931490 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA 8771 |||||| | | ||||| || ||||| |||||| || ||| Sbjct 7931491 CCTGCTCTTCCTGTTCACGCTTCCCTTCTGGATTAGCTACCA 7931532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583435806998400