Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq526 354 1e-92 seq630 304 2e-77 seq28 251 1e-61 seq494 149 9e-31 seq2 147 3e-30 seq867 123 3e-23 seq80 114 2e-20 seq57 111 2e-19 seq248 100 4e-16 >seq526 Length=1402496 Score = 354 bits (392), Expect = 1e-92 Identities = 645/937 (69%), Gaps = 14/937 (1%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 |||| || ||| || | || | |||| ||| ||| | | |||||| |||||||| Sbjct 113332 TTTAGAAATCAGCACCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCC 113391 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || || | ||||| || || ||||| || ||||||| ||| ||||| | Sbjct 113392 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 113451 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTAT--AtttttttttAAATCCTAATTCTGAAAT 39444 |||| || ||||| ||||| | ||| | | || |||| || | ||| || Sbjct 113452 CCATAAAGTCAAATGGATTCTCT--ATTCTGAAAACCTTGCTAAAACCCAGTTCCAGCAT 113509 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 ||| ||||| ||||| || |||||| ||||| | |||||||| || ||||| Sbjct 113510 G--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAG 113567 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTA-TTA 39563 | || || | ||||| || |||||||||| ||| || || || | || || ||| Sbjct 113568 CTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCAT-TGATAGTTA 113626 Query 39564 TCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGA 39623 | | ||||| ||| || ||| || | || ||||| ||||| | ||| || | Sbjct 113627 TTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAA 113686 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 | | | |||| ||||||||||| |||| | || | |||||||||||| ||||||| Sbjct 113687 AATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGGCA 113746 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743 | || || | || |||||||| ||||||| |||||||| ||||||||| ||||||||| Sbjct 113747 TCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCCTT 113806 Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACT 39800 | ||||| ||||| || |||| | || || || | | || || | ||||| Sbjct 113807 CCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGC 113866 Query 39801 TCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT 39860 | |||||||| || ||||| || ||||||||||| ||||| || ||||| |||||| Sbjct 113867 GCAAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAA 113926 Query 39861 AATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920 | | |||||| |||||| | || || || || | |||| ||||||||| |||| Sbjct 113927 ATTCCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCAGAAT 113986 Query 39921 GGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT 39980 | |||||||| || || || || || || || ||||| | |||| ||||| || | | Sbjct 113987 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATCTGAAGTT 114046 Query 39981 CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040 || | ||||| ||| |||| |||||||| ||||| |||||||| || |||| || | Sbjct 114047 CTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGGAAAG 114106 Query 40041 CCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATAT 40100 ||| || || ||||| ||| | || || || ||| | ||||| || | Sbjct 114107 CCAGAACGTGAGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCCGTATGT 114166 Query 40101 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGT 40160 | || || | ||||| || ||||| |||| || || || || ||||| || | ||| | Sbjct 114167 CCTTGGACAGGTCTACCTCCTCAGCGCTCCAGAAGGAGGCGTCCGCCTTCTTATGCATCT 114226 Query 40161 TCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||| || | | || | || || ||||| ||||| Sbjct 114227 GCCAGATGTTGTGGTACTCGATGGGGAAAATGACAAA 114263 >seq630 Length=879232 Score = 304 bits (336), Expect = 2e-77 Identities = 602/889 (68%), Gaps = 13/889 (1%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 |||| |||||| |||| || |||| ||| ||| | ||||| |||||||| Sbjct 417478 TTTAGAAGTCAGCATCCAAGATAAAAGAATTCTCTGTGGGACTTGACACCACTCCCATCC 417537 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | | | ||||| || | ||||| || || ||| | || ||||||| || ||||| | Sbjct 417538 TCTAATGCTCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAATATTCT 417597 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| || ||||| ||||| | | | | || |||| || | ||| || | Sbjct 417598 CCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 417657 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 ||| ||||| ||||| || |||||| ||||| | |||||||| || ||||| | Sbjct 417658 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 417717 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || | ||| || || ||||| | ||| || || || | | ||||| Sbjct 417718 TCACAGGCAAGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATTT 417777 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | || || || || ||| || | || |||| ||||| | ||| || || | Sbjct 417778 CTCTTTCTCCCGGCTCTGATGGTTTGTGTACTAGGTGTTGGAACATCAGGCAAGCAAAAT 417837 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||| |||| ||||||||||| |||| | ||| |||||||||||||| |||||||| | Sbjct 417838 CACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCATCA 417897 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 | || || || || ||||| ||||||| ||| ||||| ||||||||||||| |||||| | Sbjct 417898 GTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTCCA 417957 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCT 39803 |||| ||||| || ||| || || || | | || || | ||||| | Sbjct 417958 CTGCAGCAAAGGC----AGT---TCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 418010 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||| || || |||||||| ||||||||||| ||||| || ||||| |||||| | | Sbjct 418011 AGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 418070 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 |||| |||||| | ||| || || | | |||||||||||||| ||||| | Sbjct 418071 CCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACTATACATTTCAGAATGTA 418130 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 |||| || || | || || ||||| || ||||| | || || ||||| || || ||| Sbjct 418131 TGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAACTTCTT 418190 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | ||||| ||| |||| |||||||| ||||| || ||||| || ||||| || || Sbjct 418191 GGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGAAACTCA 418250 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 || || ||||| | | | || ||||| ||| | ||||| || || | Sbjct 418251 GAACGTGGGATATAAAGTGTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGAATGTCCT 418310 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTT 40152 | || || || ||||| || |||||||| || ||||| | ||| || Sbjct 418311 TGGACGGGTCCACCTCTTCGGCGGTCCAAAAGGAGGCCTCCGTCTTGTT 418359 >seq28 Length=17023488 Score = 251 bits (278), Expect = 1e-61 Identities = 609/916 (66%), Gaps = 26/916 (3%) Strand=Plus/Minus Query 69593 TAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTAT 69652 ||| || |||||| || ||| | | |||||||||||| ||| |||||||||| | | Sbjct 16623683 TAAGTCATTTCATGAAGAGAGCTGCAATCCAAAGAGC---AAAAAGATCTCTGGCACGCT 16623627 Query 69653 TTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATG 69712 |||||| ||| || |||| || || | ||| | || || | || || ||||||| | Sbjct 16623626 GTTCTTCCTTTTCTATATTCTTCTTTAAATCAAAGAATTCAAAGATGTCTAAATGCCAAG 16623567 Query 69713 GTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCT-GATCTATGTATCTG 69771 | || || || || || | |||| || | || || ||| ||| |||| | |||| Sbjct 16623566 GCTCCAGGTAAATAGCAAATGCTCCAGGACACTTGTT-CCTACCTCGATCCAGATATCAA 16623508 Query 69772 GCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831 || ||||| ||||| |||||||||||| | | || ||||| || || ||||| || || Sbjct 16623507 GCTGTGTTGTTATATACTCTCAGCATCAGTACAAGGCCATTGGAATTGCCATTCGTCTCA 16623448 Query 69832 GAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATT 69891 | ||| || || || | || | |||| ||| | || | ||| |||||||| | | Sbjct 16623447 GCAATGTAGCTGCCAGTAGCCCAAATACAACTCACAGCAACACCAATTCCTCCACCAGAT 16623388 Query 69892 TTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATC 69951 ||||| || | ||| | | || | |||||||| || || || ||||| |||| | || Sbjct 16623387 TTAGAAATCAATGCATATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCATATTTC 16623328 Query 69952 ATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTA 70011 || | ||||||||||||||||| | ||| | | || || || | || | || Sbjct 16623327 ATACTCAGAAGAAAACAGCTAGAAAGTTGTGGGCAGTTGGTACCAACACTGAAGAGAGTT 16623268 Query 70012 GGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGT---ATGTTTCAATAGCTGAT 70068 || || || ||||| ||| | | |||| ||| ||||||| ||||||||| ||| Sbjct 16623267 GGTGAAGCATGAGTAAACTACCTCTCAGGAAGAAGATTGTCTGCTGTTTCAATTGCTACA 16623208 Query 70069 TCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 || || || | || ||||| | | | | ||||||||||||| | ||| ||| Sbjct 16623207 TCAATGTCTTCTTTGTGGATTCCAACAGATGCTCTCATCAACATATGCCGTGGTATTTCA 16623148 Query 70129 ACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAG 70188 || ||| ||| |||||||||| || || || || ||||| ||||| || Sbjct 16623147 GCCACTTTTCCATTGATTTTCAACAAATAAGACCACTCTAGCAACTTAAAACCAAAGTAA 16623088 Query 70189 TTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGG-- 70246 ||||| || || ||| || | |||| | ||||||| | | ||| ||| |||| Sbjct 16623087 TTGTAAGAGAAATCTTGGTCACAGATAACAGCAGAATTCAAGTGATCTTTA---TTGGCC 16623031 Query 70247 -TAACTATATCCATAACAGTAGGTGAGATAATCGGAGATCGTTTACCATTTTTAGGATTA 70305 ||| ||||||| | | | | || ||||| ||| |||| | ||| | Sbjct 16623030 AAAACAATATCCAGTGCTGACTTGGCCACCATGGGAGAGTATTTGTCATTATGTGGACTT 16622971 Query 70306 ACATAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAA 70365 | |||| | | |||||||| |||||||| || | || |||||||| ||||| || Sbjct 16622970 ATGCAGTTATACAGGTCTTCCATCACATCACTGAACACTTCATTTGTTTCTTTGTGCAAG 16622911 Query 70366 TTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTA 70425 || || | || | || ||||| || ||||||||| || | || | ||||| |||| Sbjct 16622910 TTAGAGACAGCAGTCCTAGCTGCCAGGATAGCATAGACAAGGTGCTTAGTAGT-CAAG-- 16622854 Query 70426 GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCT 70485 | | | ||| || ||||||| ||| || | || || || | || | | | Sbjct 16622853 GTT---------GTAGCCAAAGTATCTAGTTCCATCATAGTGACCCCACTGTACAAGCAT 16622803 Query 70486 TGAATAACTTTCATGG 70501 || || |||||||||| Sbjct 16622802 TGGATTACTTTCATGG 16622787 >seq494 Length=1524325 Score = 149 bits (164), Expect = 9e-31 Identities = 301/439 (69%), Gaps = 12/439 (3%) Strand=Plus/Minus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 ||||||| || ||||| | ||| || |||||||||| |||| ||| || | | || Sbjct 780065 CCCTCATAACTGCTAATAAGTTCATTTAAAAATGTGAGGCCAGACATCAGTCATGGTTTC 780006 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAA- 39756 |||| ||| ||||| | |||||||| || ||| ||||| |||||||||||| ||||| Sbjct 780005 TTGAACCAGAATATCGATGCAAAAGAACCGGAAGAGAAGGTGCCTTCTACTGTGGCAAAG 779946 Query 39757 --TGCAACAAG-TCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATC 39813 ||||||| | |||| | ||||| | | | || ||||| | ||||||| Sbjct 779945 GCTGCAACACGTTCTCCGTGGGTAACATCT-TTGTTCACAATCCAACACAAGGCCCAATT 779887 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATC 39873 || | |||||| |||| |||||| |||| || ||||| |||||| | | | || | | Sbjct 779886 TGCCTGCTTCTTGACACTAGGCATCCTTTCAATGGCATTGAAGAGAAACTCTCTTCCTTT 779827 Query 39874 ACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAAT 39933 | |||||||| |||| || | || | | ||| ||| || |||| ||||||||| || Sbjct 779826 GTTGTCTTTAAC--ATGTGTCAGTAAAGATATTATCCATGTCAGAATAGATGTTTTCCAT 779769 Query 39934 CGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC-TGAACAAAATC 39992 || || || || || | || || | ||| ||| | || || || || || Sbjct 779768 AGCAATTTGGAAGCCATTGAAGCA---GGTTTCTGTAGCCTCAACTTCTTGGAC-GCATT 779713 Query 39993 TTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTT 40052 ||| |||| |||| || ||||| ||||| | || ||||| || | || | ||| Sbjct 779712 GCTCCACCAAGTTTTTATCAACTATGCCATCGCATGCTGCAAAGAAAGTCAGAATATGGG 779653 Query 40053 TAATAAAATATTTTTCATC 40071 ||||||||| |||| || Sbjct 779652 ATATAAAATATCTTTCCTC 779634 >seq2 Length=18007423 Score = 147 bits (162), Expect = 3e-30 Identities = 107/124 (86%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| |||||||||||||| |||||||| || || || || | Sbjct 1941489 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1941430 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||| | Sbjct 1941429 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGG 1941370 Query 39759 CAAC 39762 | || Sbjct 1941369 CTAC 1941366 >seq867 Length=266704 Score = 123 bits (136), Expect = 3e-23 Identities = 257/382 (67%), Gaps = 3/382 (1%) Strand=Plus/Minus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 |||| |||||| |||| || | ||||| ||| ||| | | |||||| |||||||| Sbjct 180931 TTTAGAAGTCAGCATCCAAGGTAAAATAATTCTCTGTTGGACTTGACATCACTCCCATCC 180872 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || ||||| || | || || || || ||||| || ||||||| ||| ||||| | Sbjct 180871 TCTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 180812 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| || ||||| ||||| | | | | || |||| || |||| || | Sbjct 180811 CCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCGATTCCAGCATAA 180752 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 ||||||||| ||||| || |||||| ||||| | ||||||||||| ||||| | Sbjct 180751 GTCTATCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATTCCGATGAGCT 180692 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || ||||| || || ||||| | ||| || || || | | ||||| Sbjct 180691 TCACAGGCGAGGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATTT 180632 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | ||||| ||| || ||| || | || |||||| |||| | ||| | || | Sbjct 180631 CTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGATGTTTGAACAACAGGCAAACAAAAT 180572 Query 39627 CACAATGTAGGCCCTCATCTCT 39648 |||| |||| ||| ||||| Sbjct 180571 CACAGTGTAAACCCGATTCTCT 180550 >seq80 Length=8459403 Score = 114 bits (126), Expect = 2e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | ||| || |||||||| || | Sbjct 1304487 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTGGCTGCCAGGA 1304546 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 |||||||||||||||| | ||||| | || || ||| |||| ||||| || ||||||| Sbjct 1304547 TAGCATAGTCAGGATGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 1304606 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || | ||||| || || ||||||| Sbjct 1304607 GTTCCACCGTGGTGACCCCACTGTACAAGCCTTGGATTACCTTCATGG 1304654 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | ||| |||||||| ||||| | || | ||| || ||||| || || || || Sbjct 1283215 GAGCCCTCATAGGTTTCATATGGTCCATGCTCCTTAGCAAGGTCACAGCTGGCTTCCAAG 1283274 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || ||||||||||| ||||| || |||| |||||| | || |||||| ||| || Sbjct 1283275 GCTCCGTAATAAATAGTTTCAAAGATCTGCTTATTCAATAGCTGGGCTTCTGCACTCTCA 1283334 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || || | || ||||| |||||||||| || || |||||||| || || || Sbjct 1283335 AAAGGGTATCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGG 1283394 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | |||||||| Sbjct 1283395 CGATGACGTTTATTTGA 1283411 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | ||| |||||||||| | | | Sbjct 1289066 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAAAAAAGATCTCTGGCACGCTGT 1289125 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || || || | || || ||||||| || Sbjct 1289126 TCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGGAATTCAAAGATGTCTAAATGCCAAGGC 1289185 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 1289186 TCCAGGTAAATAGC 1289199 >seq57 Length=8566406 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||| ||||| ||||| | ||| || Sbjct 1418657 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1418716 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| | |||||||| || || || || Sbjct 1418717 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGGCC 1418776 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 1418777 ACCACTCTTTCCCC 1418790 >seq248 Length=3346475 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 ||||| ||||| | | | |||||||| |||| |||||| |||| | || | || | Sbjct 2858666 TGTTTGAACATCAGATAAGAAAAGTCACAGTGTAAACCCTCACCTCTGTTCATAAGTTTG 2858607 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 || |||||||||| |||| ||| || || | || |||||||| ||||| | |||||| Sbjct 2858606 TTGAAAAATGTGAGGCCAGACATCAGTCCCCATTTCTTGAGCCAGAATATTGATGCAAAA 2858547 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTG 39749 | ||| |||| ||||||||||| |||| Sbjct 2858546 CAACCACAAAAAAAGATGCCTTCCACTG 2858519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686847356007840