Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq526 262 3e-65 seq630 210 2e-49 seq2 109 4e-19 seq13 104 2e-17 seq57 86.0 5e-12 >seq526 Length=1402496 Score = 262 bits (290), Expect = 3e-65 Identities = 647/968 (67%), Gaps = 29/968 (3%) Strand=Plus/Minus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | |||||| || | |||||| | || || || | || || |||| |||| Sbjct 114286 TGCTAAGAGAAAACCCTCGCCGCTTTGTCATTTTCCCCATCGAGTACCACAACATCTGGC 114227 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | ||| | || || || | || || || |||| || || || || || || | || | Sbjct 114226 AGATGCATAAGAAGGCGGACGCCTCCTTCTGGAGCGCTGAGGAGGTAGACCTGTCCAAGG 114167 Query 43797 ACTTA--GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || || |||| | ||| | | | || || | || | | | ||||||||| ||| | Sbjct 114166 ACATACGGCAC-TGGGAATCCCTGAAG-CCTGAGGAGAGATACTTTATATCTCACGTTCT 114109 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 ||| || |||| || || || || ||||| |||||||| ||||| || ||| || Sbjct 114108 GGCTTTCCTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCA 114049 Query 43915 AGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 |||| |||| ||||| ||||| | ||||| ||||| || ||||||||||| ||||| | Sbjct 114048 AGAACTTCAGATTAC-AGAAGGCTGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACA 113990 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 | ||||| |||||||| |||| || || || || ||||| |||||| | || | | Sbjct 113989 TACATTCTGAAATGTATGGTCTCCTTATCGACACTTACATAAAAGATCCCAATGAAAGGG 113930 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093 | | || ||||| || ||||| | ||| | || | || ||||| |||||| Sbjct 113929 AATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAACAAGAAGGCAGATTGGGCCT 113870 Query 44094 TTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 | ||||| | | | | | | | ||| ||||| |||| || ||||| | | Sbjct 113869 TGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAACGCGTTGTAGCCTTTGCTGCAG 113810 Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTT 44210 |||||||||| | |||||| || || ||||| ||||||| ||| | |||||| |||| Sbjct 113809 TGGAAGGCATCTACTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAGAAATGAGGAC 113750 Query 44211 TGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG 44270 |||||||||| | || ||||| |||| | | || | ||||| || ||||| | Sbjct 113749 TGATGCCTGGCCTCACATTTTCTCATGACCTTTTTAGCAGAGATGAGGGTTTACACTCAC 113690 Query 44271 ATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTA 44330 ||||||||||| || | | | | |||| | || || || ||| ||| | | | Sbjct 113689 ATTTTGCTTGCCTGATGTTCAAACACCTAGTACAC---AAACCATCAGAGGAGAGAGTAA 113633 Query 44331 CAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTG 44390 ||| || | | | || || |||||||||||| ||| | || || || |||| Sbjct 113632 GAGAAATAACTATCAATGCTGTTCGGATAGAACAAGAGTTTCTTACTGAGGCCTTGCCTG 113573 Query 44391 TAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGAT 44449 | | | || || ||||| || || | | ||||| ||||| ||||| | | ||||| Sbjct 113572 TGGAGCTCATTGGGATGAATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGGCAGAC 113514 Query 44450 CGTTTAC-TTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCCGTTTG 44504 | || | |||||||||||| | | || | || || | || || |||| Sbjct 113513 AG---ACATGCTGGAACTGGGTT----TTAGCAAGGTTTTCAGAATAGAGAATCCATTTG 113461 Query 44505 ATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAG 44564 | |||||||| |||||||| ||||||| || || ||||| ||||| || | || || | Sbjct 113460 ACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCG 113401 Query 44565 AATATCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAATTTACTACGGATGAAG 44621 | |||||| | ||||| || ||| || ||| || ||| ||||| || || | Sbjct 113400 AGTATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCTTTTACCTTGGGTGCTG 113341 Query 44622 ATTTCTAA 44629 |||||||| Sbjct 113340 ATTTCTAA 113333 >seq630 Length=879232 Score = 210 bits (232), Expect = 2e-49 Identities = 559/841 (66%), Gaps = 31/841 (4%) Strand=Plus/Minus Query 43755 AGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTA--GCACATTGGAT 43812 |||| || |||||||| || ||||| || || | | || ||| | |||| | ||| Sbjct 418349 AGGCCTCCTTTTGGACCGCCGAAGAGGTGGACCCGTCCAAGGACATTCGGCAC-TGGGAA 418291 Query 43813 TGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAG 43872 | | | || || | || | ||| |||||||| ||| || || ||||| || || Sbjct 418290 TCCCTGAAGCCCG-AGGAGAGACACTTTATATCCCACGTTCTGAGTTTCTTTGCAGCAAG 418232 Query 43873 CGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAG 43931 ||||| ||||| |||||||| ||||| || ||| ||||||||||| |||| ||| Sbjct 418231 TGACGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTA-CAG 418173 Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991 | || || ||||| ||||| || ||||||| ||| || || || ||||| |||||||| | Sbjct 418172 AGGCCCGCTGTTTCTATGGATTCCAAATTGGCATGGACAACATACATTCTGAAATGTATA 418113 Query 43992 GTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGA 44051 |||| || | || ||||| || |||||| ||| | | | | || ||||| | Sbjct 418112 GTCTCCTTACTGACACGTATATAAAAGATCCCAGCGAAAGGGAATTTCTCTTCAATGCCA 418053 Query 44052 TAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATT 44108 | ||||| | ||| | || | || |||||| ||||| | ||||| | Sbjct 418052 TTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGACCGGGCCTTGCGCTGGATTGGGGACA 417993 Query 44109 CAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 | | | | | | ||| |||| || ||||| | ||||||||| | ||||||| Sbjct 417992 AAGAGGCTACCTATGGTGAAC-------TGCCTTTGCTGCAGTGGAAGGCGTCTTCTTTT 417940 Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228 | || || || || ||||||| ||| | ||||||||||| |||||||||| | || | Sbjct 417939 CTGGTTCTTTAGCTTCCATATTCTGGCTTAAGAAACGAGGACTGATGCCTGGCCTCACAT 417880 Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTAC 44288 |||| ||||| | | || | ||||| || ||||| || |||||||||||| || | Sbjct 417879 TTTCTAATGAACTTTTTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGT 417820 Query 44289 TTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGG 44348 | | | |||| | || || || ||| | | | ||| || || | | | Sbjct 417819 TCCAACACCTAGTACAC---AAACCATCAGAGCCGGGAGAAAGAGAAATAATTATCAATG 417763 Query 44349 CAGTAAAGATAGAACAAGAATTTATGAC-AACAGCATTACCTGTAAATTTAATAGGAATG 44407 | || ||||||||| || || | || | | | || ||||| || | || || ||| Sbjct 417762 CTGTTCGGATAGAACAGGAGTTCCTCACTGAGATC-TTGCCTGTGAAGCTCATTGGGATG 417704 Query 44408 AA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACT 44466 || || || | | ||||| ||||| ||||| | | ||||| | | | ||||||| Sbjct 417703 AATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACT 417645 Query 44467 GGGTTGCGATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTT 44522 ||||| | | || | || ||| | || || ||||| |||||||| |||||| Sbjct 417644 GGGTT----TTAGCAAGGTTTTCAGAGTAGAGAATCCATTTGACTTTATGGAGAATATTC 417589 Query 44523 CGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCG 44582 | ||||||| || | ||||| ||||| || | || || || || || | ||||| | Sbjct 417588 CACTGGAAGGAAAGATTAACTTCTTTGAGAAGAGAGTAGGTGAGCATTAGAGGATGGGAG 417529 Query 44583 T 44583 | Sbjct 417528 T 417528 >seq2 Length=18007423 Score = 109 bits (120), Expect = 4e-19 Identities = 91/109 (83%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| |||| ||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 1938914 CAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGTTTCCAAATTGCCATGGAAAA 1938972 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 1938973 CATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATAAAAGAT 1939021 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| | || || ||||| | || |||||||| |||||||| || || ||||| Sbjct 1941354 GGTGAACGTGTCGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 1941413 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 1941414 TCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTT 1941473 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 1941474 ATTAGCAGAGATGA 1941487 >seq13 Length=13416947 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || || ||| | || ||||| ||||| || ||||| |||| Sbjct 11482354 TGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAACGGTGAGCTGT 11482413 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || |||||||| |||||||| ||||| || || || ||||| || | Sbjct 11482414 CCTGCCAGCTGTACCAGAGATCAGGAGACATGGGCCTAGGTGTGCCTTTCAACATTGCCA 11482473 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || ||||||||||| ||||| || ||| Sbjct 11482474 GCTACGCCCTGCTCACGTACATGATCGCGCAC 11482505 >seq57 Length=8566406 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 1408826 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 1408767 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| || ||| |||||||| Sbjct 1408766 AACGAGTCTCAGAGTATCAGCG 1408745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397421336371780