Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq526 262 3e-65
seq630 210 2e-49
seq2 109 4e-19
seq13 104 2e-17
seq57 86.0 5e-12
>seq526
Length=1402496
Score = 262 bits (290), Expect = 3e-65
Identities = 647/968 (67%), Gaps = 29/968 (3%)
Strand=Plus/Minus
Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736
|||| | |||||| || | |||||| | || || || | || || |||| ||||
Sbjct 114286 TGCTAAGAGAAAACCCTCGCCGCTTTGTCATTTTCCCCATCGAGTACCACAACATCTGGC 114227
Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796
| ||| | || || || | || || || |||| || || || || || || | || |
Sbjct 114226 AGATGCATAAGAAGGCGGACGCCTCCTTCTGGAGCGCTGAGGAGGTAGACCTGTCCAAGG 114167
Query 43797 ACTTA--GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854
|| || |||| | ||| | | | || || | || | | | ||||||||| ||| |
Sbjct 114166 ACATACGGCAC-TGGGAATCCCTGAAG-CCTGAGGAGAGATACTTTATATCTCACGTTCT 114109
Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914
||| || |||| || || || || ||||| |||||||| ||||| || ||| ||
Sbjct 114108 GGCTTTCCTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCA 114049
Query 43915 AGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973
|||| |||| ||||| ||||| | ||||| ||||| || ||||||||||| ||||| |
Sbjct 114048 AGAACTTCAGATTAC-AGAAGGCTGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACA 113990
Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033
| ||||| |||||||| |||| || || || || ||||| |||||| | || | |
Sbjct 113989 TACATTCTGAAATGTATGGTCTCCTTATCGACACTTACATAAAAGATCCCAATGAAAGGG 113930
Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093
| | || ||||| || ||||| | ||| | || | || ||||| ||||||
Sbjct 113929 AATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAACAAGAAGGCAGATTGGGCCT 113870
Query 44094 TTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150
| ||||| | | | | | | | ||| ||||| |||| || ||||| | |
Sbjct 113869 TGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAACGCGTTGTAGCCTTTGCTGCAG 113810
Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTT 44210
|||||||||| | |||||| || || ||||| ||||||| ||| | |||||| ||||
Sbjct 113809 TGGAAGGCATCTACTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAGAAATGAGGAC 113750
Query 44211 TGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG 44270
|||||||||| | || ||||| |||| | | || | ||||| || ||||| |
Sbjct 113749 TGATGCCTGGCCTCACATTTTCTCATGACCTTTTTAGCAGAGATGAGGGTTTACACTCAC 113690
Query 44271 ATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTA 44330
||||||||||| || | | | | |||| | || || || ||| ||| | | |
Sbjct 113689 ATTTTGCTTGCCTGATGTTCAAACACCTAGTACAC---AAACCATCAGAGGAGAGAGTAA 113633
Query 44331 CAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTG 44390
||| || | | | || || |||||||||||| ||| | || || || ||||
Sbjct 113632 GAGAAATAACTATCAATGCTGTTCGGATAGAACAAGAGTTTCTTACTGAGGCCTTGCCTG 113573
Query 44391 TAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGAT 44449
| | | || || ||||| || || | | ||||| ||||| ||||| | | |||||
Sbjct 113572 TGGAGCTCATTGGGATGAATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGGCAGAC 113514
Query 44450 CGTTTAC-TTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCCGTTTG 44504
| || | |||||||||||| | | || | || || | || || ||||
Sbjct 113513 AG---ACATGCTGGAACTGGGTT----TTAGCAAGGTTTTCAGAATAGAGAATCCATTTG 113461
Query 44505 ATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAG 44564
| |||||||| |||||||| ||||||| || || ||||| ||||| || | || || |
Sbjct 113460 ACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCG 113401
Query 44565 AATATCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAATTTACTACGGATGAAG 44621
| |||||| | ||||| || ||| || ||| || ||| ||||| || || |
Sbjct 113400 AGTATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCTTTTACCTTGGGTGCTG 113341
Query 44622 ATTTCTAA 44629
||||||||
Sbjct 113340 ATTTCTAA 113333
>seq630
Length=879232
Score = 210 bits (232), Expect = 2e-49
Identities = 559/841 (66%), Gaps = 31/841 (4%)
Strand=Plus/Minus
Query 43755 AGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTA--GCACATTGGAT 43812
|||| || |||||||| || ||||| || || | | || ||| | |||| | |||
Sbjct 418349 AGGCCTCCTTTTGGACCGCCGAAGAGGTGGACCCGTCCAAGGACATTCGGCAC-TGGGAA 418291
Query 43813 TGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAG 43872
| | | || || | || | ||| |||||||| ||| || || ||||| || ||
Sbjct 418290 TCCCTGAAGCCCG-AGGAGAGACACTTTATATCCCACGTTCTGAGTTTCTTTGCAGCAAG 418232
Query 43873 CGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAG 43931
||||| ||||| |||||||| ||||| || ||| ||||||||||| |||| |||
Sbjct 418231 TGACGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTA-CAG 418173
Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991
| || || ||||| ||||| || ||||||| ||| || || || ||||| |||||||| |
Sbjct 418172 AGGCCCGCTGTTTCTATGGATTCCAAATTGGCATGGACAACATACATTCTGAAATGTATA 418113
Query 43992 GTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGA 44051
|||| || | || ||||| || |||||| ||| | | | | || ||||| |
Sbjct 418112 GTCTCCTTACTGACACGTATATAAAAGATCCCAGCGAAAGGGAATTTCTCTTCAATGCCA 418053
Query 44052 TAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATT 44108
| ||||| | ||| | || | || |||||| ||||| | ||||| |
Sbjct 418052 TTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGACCGGGCCTTGCGCTGGATTGGGGACA 417993
Query 44109 CAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168
| | | | | | ||| |||| || ||||| | ||||||||| | |||||||
Sbjct 417992 AAGAGGCTACCTATGGTGAAC-------TGCCTTTGCTGCAGTGGAAGGCGTCTTCTTTT 417940
Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228
| || || || || ||||||| ||| | ||||||||||| |||||||||| | || |
Sbjct 417939 CTGGTTCTTTAGCTTCCATATTCTGGCTTAAGAAACGAGGACTGATGCCTGGCCTCACAT 417880
Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTAC 44288
|||| ||||| | | || | ||||| || ||||| || |||||||||||| || |
Sbjct 417879 TTTCTAATGAACTTTTTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGT 417820
Query 44289 TTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGG 44348
| | | |||| | || || || ||| | | | ||| || || | | |
Sbjct 417819 TCCAACACCTAGTACAC---AAACCATCAGAGCCGGGAGAAAGAGAAATAATTATCAATG 417763
Query 44349 CAGTAAAGATAGAACAAGAATTTATGAC-AACAGCATTACCTGTAAATTTAATAGGAATG 44407
| || ||||||||| || || | || | | | || ||||| || | || || |||
Sbjct 417762 CTGTTCGGATAGAACAGGAGTTCCTCACTGAGATC-TTGCCTGTGAAGCTCATTGGGATG 417704
Query 44408 AA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACT 44466
|| || || | | ||||| ||||| ||||| | | ||||| | | | |||||||
Sbjct 417703 AATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACT 417645
Query 44467 GGGTTGCGATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTT 44522
||||| | | || | || ||| | || || ||||| |||||||| ||||||
Sbjct 417644 GGGTT----TTAGCAAGGTTTTCAGAGTAGAGAATCCATTTGACTTTATGGAGAATATTC 417589
Query 44523 CGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCG 44582
| ||||||| || | ||||| ||||| || | || || || || || | ||||| |
Sbjct 417588 CACTGGAAGGAAAGATTAACTTCTTTGAGAAGAGAGTAGGTGAGCATTAGAGGATGGGAG 417529
Query 44583 T 44583
|
Sbjct 417528 T 417528
>seq2
Length=18007423
Score = 109 bits (120), Expect = 4e-19
Identities = 91/109 (83%), Gaps = 2/109 (2%)
Strand=Plus/Plus
Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971
||||||||||| |||| ||||||| || ||||| ||||| || ||||||||||| |||||
Sbjct 1938914 CAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGTTTCCAAATTGCCATGGAAAA 1938972
Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| |||||||| ||||| || || || || ||||| ||||||
Sbjct 1938973 CATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATAAAAGAT 1939021
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|| ||||| | || || ||||| | || |||||||| |||||||| || || |||||
Sbjct 1941354 GGTGAACGTGTCGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 1941413
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
||||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| |
Sbjct 1941414 TCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTT 1941473
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 1941474 ATTAGCAGAGATGA 1941487
>seq13
Length=13416947
Score = 104 bits (114), Expect = 2e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106
||||||| |||| || || ||| | || ||||| ||||| || ||||| ||||
Sbjct 11482354 TGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAACGGTGAGCTGT 11482413
Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166
| || || |||| || |||||||| |||||||| ||||| || || || ||||| || |
Sbjct 11482414 CCTGCCAGCTGTACCAGAGATCAGGAGACATGGGCCTAGGTGTGCCTTTCAACATTGCCA 11482473
Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198
| || || ||||||||||| ||||| || |||
Sbjct 11482474 GCTACGCCCTGCTCACGTACATGATCGCGCAC 11482505
>seq57
Length=8566406
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| |
Sbjct 1408826 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 1408767
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| || ||| ||||||||
Sbjct 1408766 AACGAGTCTCAGAGTATCAGCG 1408745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397421336371780
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