Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq683 91.5 1e-13 seq80 84.2 2e-11 >seq683 Length=714717 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 27016 TATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGT 27075 || |||| || |||| |||| |||| || | || || ||||| || || ||||||| Sbjct 111371 TAATGCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGT 111430 Query 27076 CGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCG 27135 | | |||| | || || |||| ||||||||| | || |||||||| ||||| | Sbjct 111431 CTGAGAGCGTGCGGCCATCCTCCAGCTATTTACCGGCAAATATCAGACGCTGCTGATCAG 111490 Query 27136 GCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT 27195 | || | |||||| || || || ||| ||| | | || | ||||| ||| | Sbjct 111491 GTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTAACATTCTCAATGGTGTCACTGGGCT 111550 Query 27196 CAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | || || || || || | |||||| | || || ||||||||||| ||||| |||| Sbjct 111551 CGACCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCATCTCTGC 111608 >seq80 Length=8459403 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131029 AGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATT 131088 ||| ||||| ||| |||||||| |||||||||||||| ||||| || || ||||| Sbjct 1283250 AGCAAGGTCACAGCTGGCTTCCAAGGCTCCGTAATAAATAGTTTCAAAGATCTGCTTATT 1283309 Query 131089 TAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAG 131148 ||| | | |||| ||||| |||| || |||| | |||||||| ||||| || Sbjct 1283310 CAATAGCTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAAGCATCTGCCAG 1283369 Query 131149 ACCCTGTATCCCAA 131162 ||| |||| ||||| Sbjct 1283370 ACCTTGTACCCCAA 1283383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424897339877472