Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq599 145 6e-30 seq13 107 2e-18 >seq599 Length=1005688 Score = 145 bits (160), Expect = 6e-30 Identities = 448/686 (65%), Gaps = 19/686 (3%) Strand=Plus/Minus Query 111615 AAAGTCATCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGG 111674 |||||| ||||| || || ||||| ||||| ||| ||| || || ||||| Sbjct 754635 AAAGTCTTCAGCTTTGAAGTCATCAATTTTCTCAACTTGTCGAAGAATCTTGAGCTTTGG 754576 Query 111675 AAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAAC 111734 || || | || | ||| |||||| | || | |||| |||||||| | |||| Sbjct 754575 GAAAGGTCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGTAAAT 754516 Query 111735 ATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAAT 111794 ||| |||||||| | | ||| | || || | |||| || || |||||||| || || Sbjct 754515 ATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCGAT 754456 Query 111795 CATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCC 111854 || ||| ||||| | |||| || || |||| || ||||||||||||||||| ||||| Sbjct 754455 CACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGTCTCC 754396 Query 111855 CGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTAC 111914 ||||| || | ||||| || || || | | | | | || || || || || | Sbjct 754395 TGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCAGAGGGC 754336 Query 111915 ATGACAAGGAGGCAATGCCATCCCATTCATA---AAGGGTCCCCATGCACACATGATCAT 111971 ||| || ||||||| |||||| | | | || ||| || |||||||| || Sbjct 754335 ATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGATGAT 754276 Query 111972 CCTTCTGCTGTAGCGATTATGTTCAATGTCGTGTATGACATTC--AAGAGCTGGTCTATC 112029 |||||| | | || || ||| |||| | || || || ||||| | Sbjct 754275 TCTTCTGTCATCAGGGTTGGTTTTGATG--GTGTCAGTCACTCTTTGTAGTTGGTCAACT 754218 Query 112030 CCTTTACCAGTATAATCCGCCTGACATCCA-----GTGTATGTTGCCCCATAGTGTCTCC 112084 |||| || | ||||| |||| ||||| ||||| ||||||| | || |||| Sbjct 754217 CCTTGTCCTGAATAAT----CTGA-ATCCATATCTCTGTATTCTGCCCCAAAATGCCTCC 754163 Query 112085 ATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCTGTATCTGGAAATTGCTCTCTAT 112144 | ||||| ||||||| || |||| || || || | | | ||| | |||| Sbjct 754162 ACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTAT 754103 Query 112145 TCAACAAATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTC 112204 || || || | || | || ||| || |||||||| || || || | |||| Sbjct 754102 CCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTT 754043 Query 112205 TTGCATTTGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACA 112264 | || ||| ||| ||| | ||||| || ||||| || |||| ||| || |||||| ||| Sbjct 754042 TAGC-TTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACA 753984 Query 112265 C-TCTTTTAGTAGTTAGCAGTGGAAA 112289 | | ||| || || ||||| ||||| Sbjct 753983 CAACGTTTGGTTGTCAGCAGAGGAAA 753958 >seq13 Length=13416947 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||||||| || |||||||| ||||| || ||| || |||||||| || |||||| Sbjct 11482513 CCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGCACA 11482454 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 ||||||||||| ||||| ||||| || || ||||| || || || | | | ||| Sbjct 11482453 CCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACG 11482394 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || || || |||| || ||||||| |||||| Sbjct 11482393 TAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 11482355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391911416954428