Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_028099.1
Length=122522
Score E
Sequences producing significant alignments: (Bits) Value
seq599 145 6e-30
seq13 107 2e-18
>seq599
Length=1005688
Score = 145 bits (160), Expect = 6e-30
Identities = 448/686 (65%), Gaps = 19/686 (3%)
Strand=Plus/Minus
Query 111615 AAAGTCATCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGG 111674
|||||| ||||| || || ||||| ||||| ||| ||| || || |||||
Sbjct 754635 AAAGTCTTCAGCTTTGAAGTCATCAATTTTCTCAACTTGTCGAAGAATCTTGAGCTTTGG 754576
Query 111675 AAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAAC 111734
|| || | || | ||| |||||| | || | |||| |||||||| | ||||
Sbjct 754575 GAAAGGTCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGTAAAT 754516
Query 111735 ATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAAT 111794
||| |||||||| | | ||| | || || | |||| || || |||||||| || ||
Sbjct 754515 ATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCGAT 754456
Query 111795 CATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCC 111854
|| ||| ||||| | |||| || || |||| || ||||||||||||||||| |||||
Sbjct 754455 CACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGTCTCC 754396
Query 111855 CGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTAC 111914
||||| || | ||||| || || || | | | | | || || || || || |
Sbjct 754395 TGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCAGAGGGC 754336
Query 111915 ATGACAAGGAGGCAATGCCATCCCATTCATA---AAGGGTCCCCATGCACACATGATCAT 111971
||| || ||||||| |||||| | | | || ||| || |||||||| ||
Sbjct 754335 ATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGATGAT 754276
Query 111972 CCTTCTGCTGTAGCGATTATGTTCAATGTCGTGTATGACATTC--AAGAGCTGGTCTATC 112029
|||||| | | || || ||| |||| | || || || ||||| |
Sbjct 754275 TCTTCTGTCATCAGGGTTGGTTTTGATG--GTGTCAGTCACTCTTTGTAGTTGGTCAACT 754218
Query 112030 CCTTTACCAGTATAATCCGCCTGACATCCA-----GTGTATGTTGCCCCATAGTGTCTCC 112084
|||| || | ||||| |||| ||||| ||||| ||||||| | || ||||
Sbjct 754217 CCTTGTCCTGAATAAT----CTGA-ATCCATATCTCTGTATTCTGCCCCAAAATGCCTCC 754163
Query 112085 ATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCTGTATCTGGAAATTGCTCTCTAT 112144
| ||||| ||||||| || |||| || || || | | | ||| | ||||
Sbjct 754162 ACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTAT 754103
Query 112145 TCAACAAATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTC 112204
|| || || | || | || ||| || |||||||| || || || | ||||
Sbjct 754102 CCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTT 754043
Query 112205 TTGCATTTGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACA 112264
| || ||| ||| ||| | ||||| || ||||| || |||| ||| || |||||| |||
Sbjct 754042 TAGC-TTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACA 753984
Query 112265 C-TCTTTTAGTAGTTAGCAGTGGAAA 112289
| | ||| || || ||||| |||||
Sbjct 753983 CAACGTTTGGTTGTCAGCAGAGGAAA 753958
>seq13
Length=13416947
Score = 107 bits (118), Expect = 2e-18
Identities = 119/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837
|| |||||||| || |||||||| ||||| || ||| || |||||||| || ||||||
Sbjct 11482513 CCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGCACA 11482454
Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897
||||||||||| ||||| ||||| || || ||||| || || || | | | |||
Sbjct 11482453 CCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACG 11482394
Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936
|| || || || || |||| || ||||||| ||||||
Sbjct 11482393 TAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 11482355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 391911416954428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |