Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq352 95.1 1e-14 seq229 95.1 1e-14 seq2 91.5 2e-13 seq630 86.0 7e-12 >seq352 Length=2408237 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 792704 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 792645 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| |||| | | | ||| | ||||| ||||||||||| |||||||| || ||| Sbjct 792644 CCAATCGGTTGAAGTAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 792585 Query 117425 ATCGT 117429 || || Sbjct 792584 ATAGT 792580 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 792704 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 792645 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| || | || | ||| | ||||| ||||| || |||||||||||||||||| Sbjct 792644 CCAATCGGTTGAAGTAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 792585 Query 152149 ATCGT 152153 || || Sbjct 792584 ATAGT 792580 >seq229 Length=4077172 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| || | || |||| ||||||||||||| || | ||||| || || Sbjct 3327660 GTGAAGATGTATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 3327719 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| |||||||| || |||||||| |||| | Sbjct 3327720 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 3327779 Query 117425 ATCGT 117429 || || Sbjct 3327780 ATGGT 3327784 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| |||| || |||||||| Sbjct 3327660 GTGAAGATGTATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 3327719 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 3327720 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 3327779 Query 152149 ATCGT 152153 || || Sbjct 3327780 ATGGT 3327784 >seq2 Length=18007423 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||||| Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || |||| || |||||| |||||||||||||| || |||||||| Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCT 1941368 Query 74892 ACAAGGCGTT 74901 || | |||| Sbjct 1941367 ACGACACGTT 1941358 >seq630 Length=879232 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| | | |||||| ||||| | ||||||||||| ||||| || ||| Sbjct 417849 CCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTC 417908 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || |||| | || |||||| ||||||| |||||| || |||||| Sbjct 417909 TTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTCCACTGCAGCAAAG 417968 Query 74889 GC 74890 || Sbjct 417969 GC 417970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547167051528800