Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq352 95.1 1e-14
seq229 95.1 1e-14
seq2 91.5 2e-13
seq630 86.0 7e-12
>seq352
Length=2408237
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| |||||||||||| ||||||||| ||| || || || || ||
Sbjct 792704 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 792645
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| |||| | | | ||| | ||||| ||||||||||| |||||||| || |||
Sbjct 792644 CCAATCGGTTGAAGTAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 792585
Query 117425 ATCGT 117429
|| ||
Sbjct 792584 ATAGT 792580
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| || || || | ||| || ||||| |||||||| ||||| |||||||||||
Sbjct 792704 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 792645
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| || | || | ||| | ||||| ||||| || ||||||||||||||||||
Sbjct 792644 CCAATCGGTTGAAGTAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 792585
Query 152149 ATCGT 152153
|| ||
Sbjct 792584 ATAGT 792580
>seq229
Length=4077172
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| || | || |||| ||||||||||||| || | ||||| || ||
Sbjct 3327660 GTGAAGATGTATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 3327719
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| |||||||||||| || ||| |||||||| || |||||||| |||| |
Sbjct 3327720 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 3327779
Query 117425 ATCGT 117429
|| ||
Sbjct 3327780 ATGGT 3327784
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | || || | |||||||||||| |||| || ||||||||
Sbjct 3327660 GTGAAGATGTATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 3327719
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | |
Sbjct 3327720 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 3327779
Query 152149 ATCGT 152153
|| ||
Sbjct 3327780 ATGGT 3327784
>seq2
Length=18007423
Score = 91.5 bits (100), Expect = 2e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| ||||| | ||||||||||| ||||| || |||||
Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| ||| || |||| || |||||| |||||||||||||| || ||||||||
Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCT 1941368
Query 74892 ACAAGGCGTT 74901
|| | ||||
Sbjct 1941367 ACGACACGTT 1941358
>seq630
Length=879232
Score = 86.0 bits (94), Expect = 7e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828
|| ||||||||||| | | |||||| ||||| | ||||||||||| ||||| || |||
Sbjct 417849 CCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTC 417908
Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888
|| | ||| || |||| | || |||||| ||||||| |||||| || ||||||
Sbjct 417909 TTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTCCACTGCAGCAAAG 417968
Query 74889 GC 74890
||
Sbjct 417969 GC 417970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547167051528800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |