Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq151 105 9e-18 seq75 86.0 8e-12 >seq151 Length=5769222 Score = 105 bits (116), Expect = 9e-18 Identities = 558/882 (63%), Gaps = 13/882 (1%) Strand=Plus/Plus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||| || ||||||| |||||||| || || || || |||||| | || ||||| Sbjct 2473425 GCCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCGTATTCTATCGTGGTTCATCACAA 2473484 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 |||||| ||| | || | || |||||||||||||| || ||||| |||| || | Sbjct 2473485 GATCGAAATGCTTGACAGGCTACTGAGGGCCATCTATATGCCTCAGAATTTCTATTGTAT 2473544 Query 13790 CCACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847 || |||||| || |||| || | || | | | | | || ||| || Sbjct 2473545 TCATGTGGACAAAAAATCCGAGGATTCCTATTTAGCTGCAGTGAT--GGGCATTGCATCC 2473602 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 || ||| ||| || | ||||| ||| || | ||||| || | || ||||| Sbjct 2473603 TGTTTCAGTAATGTCTTCGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 2473662 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 || || ||||| ||||||| ||||||| |||||| |||| | || |||| | Sbjct 2473663 CGGGTTCAGGCTGACCTCAACTGCATGAAGGACCTCTACGCAATGAGGGCGAACTGGAAG 2473722 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 ||| || | || || || || ||||| || || | || |||||||| || || || || Sbjct 2473723 TACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTCAGG 2473782 Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCAC--A 14085 ||| ||| || || | ||| |||||| | ||| | ||||| | ||| | Sbjct 2473783 AAGCTCAAGTTGTTGATGGGAGAAAACAACCTGGAAACGGAGAGGATGCC-ATCCAATAA 2473841 Query 14086 AGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCG 14145 || | | | | ||| || | | ||| || || | || ||||| | Sbjct 2473842 AGAAGAAAGGTGGAAA-AAGCGGTATGAGGT---CATTAATGGAAAGTTGACAAACACAG 2473897 Query 14146 GCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTG 14205 | | ||| | || ||||| | ||||| ||| | || | || ||||||| Sbjct 2473898 GGACTGTCAAAATGCTTCCTCCGCTGGCAACACCCATTTTTTCTGGCAGTGCCTACTTTG 2473957 Query 14206 CGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGC 14265 ||||| |||||| |||| | || || || | || | | | ||| Sbjct 2473958 TGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAAAATCCAAAAGTTTATGG 2474017 Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325 | ||| | ||||| || ||||| || ||| | || ||||| ||| | ||||| || | Sbjct 2474018 AGTGGGCACAAGACACATATAGCCCTGATGAGTATCTCTGGGCTACCATCCAGAGGAT-T 2474076 Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTGGGCC 14384 | | | |||||| | | | || | |||||||| || |||||| ||| Sbjct 2474077 CCTGAAGTCCCGGGCTCACTCTCTGCCAGCCATAAGTACGATTTGTCTGACATGCAGGCG 2474136 Query 14385 AAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTAC 14444 | | |||||| ||||||||||| |||| ||||| ||| | || || || | ||| Sbjct 2474137 ATTGCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGATGTTTCCAAGGGTGCTCCCTAC 2474196 Query 14445 CCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAG 14504 || || |||||||| | ||||| | | | | ||||| ||||| | || ||| |||| Sbjct 2474197 CCACCCTGCGACGGGGTGCACGTGCGCTCGGTGTGCATTTTCGGAGCTGGTGACTTGAAC 2474256 Query 14505 TGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 ||| || | || | ||| |||| ||||| ||||| ||| Sbjct 2474257 TGGATGCTGCGCAAGCATCACTTGTTTGCCAATAAGTTTGAC 2474298 >seq75 Length=7679811 Score = 86.0 bits (94), Expect = 8e-12 Identities = 186/276 (67%), Gaps = 12/276 (4%) Strand=Plus/Plus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGG--GACGC 14334 ||||| |||||||| ||||| ||||| ||||||||| | ||| | || | || || || Sbjct 6832276 GACACCTACAGCCCTGACGAACACCTCTGGGCCACCCTTCAGCG--TGCATGGTGGATGC 6832333 Query 14335 CCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394 | || | ||| ||| |||||| |||| ||| |||||| | | | |||| Sbjct 6832334 CTGGCTCTGTTCCCCACCACCGCAAGTATGACATCTCAGACATGACTTCTATTGCCAGGC 6832393 Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454 | ||||||||||| | ||||| || |||| || || |||| || |||||| Sbjct 6832394 TGGTCAAGTGGCAGGGTCATGAGGGAGACATCAGTAAGGGTGCCCCTTATGGCCCTTGCT 6832453 Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTG---- 14510 || |||||| | || ||||| | | ||| | || |||||| | ||| || Sbjct 6832454 CTGGAATCCACCAGCGGGCTATCTGTGTGTATGGGGCTGGGGACGTGCATTGGATGCTTC 6832513 Query 14511 AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || | ||| |||||||| ||||||||||| ||| Sbjct 6832514 AAAA----CCCTCACCTGTTGGCCAACAAGTTTGAC 6832545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658680275778560