Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq151 105 9e-18
seq75 86.0 8e-12
>seq151
Length=5769222
Score = 105 bits (116), Expect = 9e-18
Identities = 558/882 (63%), Gaps = 13/882 (1%)
Strand=Plus/Plus
Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729
|||||| || ||||||| |||||||| || || || || |||||| | || |||||
Sbjct 2473425 GCCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCGTATTCTATCGTGGTTCATCACAA 2473484
Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789
|||||| ||| | || | || |||||||||||||| || ||||| |||| || |
Sbjct 2473485 GATCGAAATGCTTGACAGGCTACTGAGGGCCATCTATATGCCTCAGAATTTCTATTGTAT 2473544
Query 13790 CCACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847
|| |||||| || |||| || | || | | | | | || ||| ||
Sbjct 2473545 TCATGTGGACAAAAAATCCGAGGATTCCTATTTAGCTGCAGTGAT--GGGCATTGCATCC 2473602
Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907
|| ||| ||| || | ||||| ||| || | ||||| || | || |||||
Sbjct 2473603 TGTTTCAGTAATGTCTTCGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 2473662
Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967
|| || ||||| ||||||| ||||||| |||||| |||| | || |||| |
Sbjct 2473663 CGGGTTCAGGCTGACCTCAACTGCATGAAGGACCTCTACGCAATGAGGGCGAACTGGAAG 2473722
Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027
||| || | || || || || ||||| || || | || |||||||| || || || ||
Sbjct 2473723 TACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTCAGG 2473782
Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCAC--A 14085
||| ||| || || | ||| |||||| | ||| | ||||| | ||| |
Sbjct 2473783 AAGCTCAAGTTGTTGATGGGAGAAAACAACCTGGAAACGGAGAGGATGCC-ATCCAATAA 2473841
Query 14086 AGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCG 14145
|| | | | | ||| || | | ||| || || | || ||||| |
Sbjct 2473842 AGAAGAAAGGTGGAAA-AAGCGGTATGAGGT---CATTAATGGAAAGTTGACAAACACAG 2473897
Query 14146 GCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTG 14205
| | ||| | || ||||| | ||||| ||| | || | || |||||||
Sbjct 2473898 GGACTGTCAAAATGCTTCCTCCGCTGGCAACACCCATTTTTTCTGGCAGTGCCTACTTTG 2473957
Query 14206 CGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGC 14265
||||| |||||| |||| | || || || | || | | | |||
Sbjct 2473958 TGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAAAATCCAAAAGTTTATGG 2474017
Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325
| ||| | ||||| || ||||| || ||| | || ||||| ||| | ||||| || |
Sbjct 2474018 AGTGGGCACAAGACACATATAGCCCTGATGAGTATCTCTGGGCTACCATCCAGAGGAT-T 2474076
Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTGGGCC 14384
| | | |||||| | | | || | |||||||| || |||||| |||
Sbjct 2474077 CCTGAAGTCCCGGGCTCACTCTCTGCCAGCCATAAGTACGATTTGTCTGACATGCAGGCG 2474136
Query 14385 AAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTAC 14444
| | |||||| ||||||||||| |||| ||||| ||| | || || || | |||
Sbjct 2474137 ATTGCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGATGTTTCCAAGGGTGCTCCCTAC 2474196
Query 14445 CCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAG 14504
|| || |||||||| | ||||| | | | | ||||| ||||| | || ||| ||||
Sbjct 2474197 CCACCCTGCGACGGGGTGCACGTGCGCTCGGTGTGCATTTTCGGAGCTGGTGACTTGAAC 2474256
Query 14505 TGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546
||| || | || | ||| |||| ||||| ||||| |||
Sbjct 2474257 TGGATGCTGCGCAAGCATCACTTGTTTGCCAATAAGTTTGAC 2474298
>seq75
Length=7679811
Score = 86.0 bits (94), Expect = 8e-12
Identities = 186/276 (67%), Gaps = 12/276 (4%)
Strand=Plus/Plus
Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGG--GACGC 14334
||||| |||||||| ||||| ||||| ||||||||| | ||| | || | || || ||
Sbjct 6832276 GACACCTACAGCCCTGACGAACACCTCTGGGCCACCCTTCAGCG--TGCATGGTGGATGC 6832333
Query 14335 CCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394
| || | ||| ||| |||||| |||| ||| |||||| | | | ||||
Sbjct 6832334 CTGGCTCTGTTCCCCACCACCGCAAGTATGACATCTCAGACATGACTTCTATTGCCAGGC 6832393
Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454
| ||||||||||| | ||||| || |||| || || |||| || ||||||
Sbjct 6832394 TGGTCAAGTGGCAGGGTCATGAGGGAGACATCAGTAAGGGTGCCCCTTATGGCCCTTGCT 6832453
Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTG---- 14510
|| |||||| | || ||||| | | ||| | || |||||| | ||| ||
Sbjct 6832454 CTGGAATCCACCAGCGGGCTATCTGTGTGTATGGGGCTGGGGACGTGCATTGGATGCTTC 6832513
Query 14511 AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546
|| | ||| |||||||| ||||||||||| |||
Sbjct 6832514 AAAA----CCCTCACCTGTTGGCCAACAAGTTTGAC 6832545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658680275778560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |