Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq599 307 9e-79
seq13 134 1e-26
seq9 104 2e-17
seq772 102 7e-17
seq17 93.3 3e-14
>seq599
Length=1005688
Score = 307 bits (340), Expect = 9e-79
Identities = 484/686 (71%), Gaps = 9/686 (1%)
Strand=Plus/Minus
Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897
||||||||| |||||| || | || |||||| | ||||| || | | || || |||||
Sbjct 754578 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGT 754520
Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957
| | || || ||||||| | || ||||| || || || | || || |||| ||| |
Sbjct 754519 AAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCG 754460
Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017
| |||| ||||||||| | | |||||||||| |||| || || || || || |||||||
Sbjct 754459 CGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGT 754400
Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077
| || || ||||||| ||||| || || ||||| || | | |||| ||||| || |
Sbjct 754399 CTCCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCAGA 754340
Query 30078 TGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACA 30134
||| ||||| ||||| || ||||| |||| ||| ||| | || ||||| |||||||
Sbjct 754339 GGGCATGGCATGGAGGCAGCGCCATCAGAGG---AAGATCTCTTGGATTCCAAGCGCACA 754283
Query 30135 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 30194
|||||| | ||||| || |||||| | ||||| ||| | |||| || || |
Sbjct 754282 TGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGTAGTTGGT 754223
Query 30195 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30254
| || || || || || |||| ||| || |||| ||||| || ||||||||||
Sbjct 754222 CAACTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCC 754163
Query 30255 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30314
||||||| || || || || |||| ||| || ||||| ||| ||| ||| | |
Sbjct 754162 ACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTAT 754103
Query 30315 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTT 30374
||| |||||||| ||| || ||||| |||||||| || || ||||| ||| |||||||
Sbjct 754102 CCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTT 754043
Query 30375 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 30434
| | ||| ||| || ||| || ||||||| |||||||| || ||||||| || |
Sbjct 754042 TAG-CTTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACA 753984
Query 30435 C-CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCA 30493
| | ||||| || || || ||||| | | | |||| ||| | ||||| ||
Sbjct 753983 CAACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCG 753924
Query 30494 AACACGGACAAGACTCCCGTGCCCGT 30519
||||| |||| | || ||||| ||
Sbjct 753923 AACACCGACAGGGTCCCGGTGCCGGT 753898
>seq13
Length=13416947
Score = 134 bits (148), Expect = 1e-26
Identities = 128/164 (78%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || |||| ||| || |||||||||||||| || | ||||||||| ||||| || ||
Sbjct 11482516 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 11482457
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || |||||||| || || |||||||| ||||| || || ||||| |||| |
Sbjct 11482456 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 11482397
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
||||| ||||| || | ||| ||||| ||||| || ||||| ||
Sbjct 11482396 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 11482353
Score = 114 bits (126), Expect = 1e-20
Identities = 130/173 (75%), Gaps = 1/173 (1%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| ||||| || ||||||||||||||||| || || || || |||| |||
Sbjct 11478307 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 11478248
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
|| ||||| ||| ||| ||| | |||| |||||||| ||| || ||||| ||
Sbjct 11478247 CCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATC 11478188
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30395
|||||| || || ||||| ||| |||||||| | |||||||| || ||||
Sbjct 11478187 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 11478136
>seq9
Length=13051293
Score = 104 bits (114), Expect = 2e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438
||||||||| || || | || || ||||||||||| ||||| || || || || |
Sbjct 8822032 ATGAGCTCCTTGTGGAGGTCCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTT 8822091
Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498
| ||||| ||| || || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 8822092 TAAAGGTCGATTTTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 8822151
Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 110530
||| || || |||||||| || | |||||
Sbjct 8822152 CTGTTTATCTTCTACTGAAGAGGTTGTGGTCA 8822183
>seq772
Length=448342
Score = 102 bits (112), Expect = 7e-17
Identities = 170/241 (71%), Gaps = 10/241 (4%)
Strand=Plus/Minus
Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438
||||||||| || || || || || || |||||||| |||| || || || || |
Sbjct 145484 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 145425
Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498
| ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 145424 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 145365
Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557
||| || ||| | |||||| | | ||| | ||| | || | | || || || |
Sbjct 145364 CTGTTTACCTTCTATTGAAGAGGCTGTCGTC-ATTCTCTGGAAATACCTGAATTCATTTC 145306
Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACA 110615
||| || |||| ||||| ||||| || || ||||| |||||| ||| |||||
Sbjct 145305 TGAGT------GGTGGCCAGGGCAGGTCTCCCTTCTTGCCGATACCCATGTTCTGGGACA 145252
Query 110616 C 110616
|
Sbjct 145251 C 145251
>seq17
Length=12262279
Score = 93.3 bits (102), Expect = 3e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| || ||||||||||| ||||| || || || || | | ||||| |||||| || ||
Sbjct 1279978 TTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 1280037
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT 110504
||||||||||| ||||| |||||||| ||||||| ||||| ||
Sbjct 1280038 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTT 1280081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406274964146352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |