Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq599 307 9e-79 seq13 134 1e-26 seq9 104 2e-17 seq772 102 7e-17 seq17 93.3 3e-14 >seq599 Length=1005688 Score = 307 bits (340), Expect = 9e-79 Identities = 484/686 (71%), Gaps = 9/686 (1%) Strand=Plus/Minus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||||| |||||| || | || |||||| | ||||| || | | || || ||||| Sbjct 754578 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGT 754520 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | || || ||||||| | || ||||| || || || | || || |||| ||| | Sbjct 754519 AAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCG 754460 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||| ||||||||| | | |||||||||| |||| || || || || || ||||||| Sbjct 754459 CGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGT 754400 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077 | || || ||||||| ||||| || || ||||| || | | |||| ||||| || | Sbjct 754399 CTCCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCAGA 754340 Query 30078 TGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACA 30134 ||| ||||| ||||| || ||||| |||| ||| ||| | || ||||| ||||||| Sbjct 754339 GGGCATGGCATGGAGGCAGCGCCATCAGAGG---AAGATCTCTTGGATTCCAAGCGCACA 754283 Query 30135 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 30194 |||||| | ||||| || |||||| | ||||| ||| | |||| || || | Sbjct 754282 TGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGTAGTTGGT 754223 Query 30195 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30254 | || || || || || |||| ||| || |||| ||||| || |||||||||| Sbjct 754222 CAACTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCC 754163 Query 30255 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30314 ||||||| || || || || |||| ||| || ||||| ||| ||| ||| | | Sbjct 754162 ACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTAT 754103 Query 30315 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTT 30374 ||| |||||||| ||| || ||||| |||||||| || || ||||| ||| ||||||| Sbjct 754102 CCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTT 754043 Query 30375 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 30434 | | ||| ||| || ||| || ||||||| |||||||| || ||||||| || | Sbjct 754042 TAG-CTTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACA 753984 Query 30435 C-CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCA 30493 | | ||||| || || || ||||| | | | |||| ||| | ||||| || Sbjct 753983 CAACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCG 753924 Query 30494 AACACGGACAAGACTCCCGTGCCCGT 30519 ||||| |||| | || ||||| || Sbjct 753923 AACACCGACAGGGTCCCGGTGCCGGT 753898 >seq13 Length=13416947 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||||||||| || | ||||||||| ||||| || || Sbjct 11482516 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 11482457 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || || |||||||| ||||| || || ||||| |||| | Sbjct 11482456 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 11482397 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||| ||||| ||||| || ||||| || Sbjct 11482396 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 11482353 Score = 114 bits (126), Expect = 1e-20 Identities = 130/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 11478307 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 11478248 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||||| ||| ||| ||| | |||| |||||||| ||| || ||||| || Sbjct 11478247 CCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATC 11478188 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30395 |||||| || || ||||| ||| |||||||| | |||||||| || |||| Sbjct 11478187 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 11478136 >seq9 Length=13051293 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || | || || ||||||||||| ||||| || || || || | Sbjct 8822032 ATGAGCTCCTTGTGGAGGTCCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTT 8822091 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| ||| || || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 8822092 TAAAGGTCGATTTTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 8822151 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 110530 ||| || || |||||||| || | ||||| Sbjct 8822152 CTGTTTATCTTCTACTGAAGAGGTTGTGGTCA 8822183 >seq772 Length=448342 Score = 102 bits (112), Expect = 7e-17 Identities = 170/241 (71%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 145484 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 145425 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 145424 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 145365 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| | |||||| | | ||| | ||| | || | | || || || | Sbjct 145364 CTGTTTACCTTCTATTGAAGAGGCTGTCGTC-ATTCTCTGGAAATACCTGAATTCATTTC 145306 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACA 110615 ||| || |||| ||||| ||||| || || ||||| |||||| ||| ||||| Sbjct 145305 TGAGT------GGTGGCCAGGGCAGGTCTCCCTTCTTGCCGATACCCATGTTCTGGGACA 145252 Query 110616 C 110616 | Sbjct 145251 C 145251 >seq17 Length=12262279 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || ||||||||||| ||||| || || || || | | ||||| |||||| || || Sbjct 1279978 TTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 1280037 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT 110504 ||||||||||| ||||| |||||||| ||||||| ||||| || Sbjct 1280038 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTT 1280081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406274964146352