Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq683 109 3e-19 seq38 109 3e-19 seq407 104 1e-17 seq487 102 5e-17 >seq683 Length=714717 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| || || ||| ||| || || ||||| || ||||| Sbjct 111375 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 111434 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || | ||||||||||||||| | |||||| || || || || Sbjct 111435 GAGCGTGCGGCCATCCTCCAGCTATTTACCGGCAAATATCAGACGCTGCTGATCAGGTGG 111494 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | |||||| | ||| ||||| | ||| | Sbjct 111495 GATACCCTCCTTGTCT-TGAATTTTGGCTTTAACATTCTCAATGGTGTCACTGGGCTCGA 111553 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || | | || |||||||| |||||||| Sbjct 111554 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 111602 >seq38 Length=10264441 Score = 109 bits (120), Expect = 3e-19 Identities = 164/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| || || ||| ||| || || ||||| || ||||| Sbjct 9540873 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 9540814 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| | | || || || ||||| ||||||||||| | |||||| ||||| || || Sbjct 9540813 GAGTGTGTGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 9540754 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | ||| ||||| || ||| | Sbjct 9540753 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTC-ACGGGCTCGA 9540696 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || | | || |||||||| |||||||| Sbjct 9540695 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 9540647 >seq407 Length=3256691 Score = 104 bits (114), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| || || ||| ||| || || ||||| || ||||| Sbjct 904218 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 904277 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || | | ||||||||| | |||||| ||||| || || Sbjct 904278 GAGCGTGCGGCCATCCTCCAGCTGCTGGCTGGCAAATATCAGACGCTGCTGGTCAGGTGG 904337 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | ||| ||||| | | ||| | Sbjct 904338 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCATTGGGCTCGA 904396 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || | || |||||||| |||||||| Sbjct 904397 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 904445 >seq487 Length=2137387 Score = 102 bits (112), Expect = 5e-17 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 34483 CCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGT 34542 |||| || |||| ||||| || || ||| ||| || || ||||| || ||||| || Sbjct 1405224 CCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGC 1405283 Query 34543 GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACT 34602 || || | || || || |||| ||||||||||| | || ||| ||||| || || | Sbjct 1405284 GTGCGGCCATCCTCCAGCTGTTGGCCGGCAAATATCAGACACTGCTGGTCAGGTGGGATA 1405343 Query 34603 CCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTC 34661 ||| |||||||| ||| ||| | |||||| | ||| ||||| | ||| || || Sbjct 1405344 CCCACCTTGTCT-TGAATTTTGGATTTAACATTCTCAATGGTGTCACTGGGCTCGACCTC 1405402 Query 34662 CACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||| || || ||||| || | || |||||| | |||||||| Sbjct 1405403 AAGGGTGATGGTCTTACCCGTGAGGGTCTTCACAGAGATCTGCAT 1405447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314702151251348