Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq683 109 3e-19
seq38 109 3e-19
seq407 104 1e-17
seq487 102 5e-17
>seq683
Length=714717
Score = 109 bits (120), Expect = 3e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| |||| || |||| ||||| || || ||| ||| || || ||||| || |||||
Sbjct 111375 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 111434
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || | || || || | ||||||||||||||| | |||||| || || || ||
Sbjct 111435 GAGCGTGCGGCCATCCTCCAGCTATTTACCGGCAAATATCAGACGCTGCTGATCAGGTGG 111494
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| |||||||||||| ||| ||| | |||||| | ||| ||||| | ||| |
Sbjct 111495 GATACCCTCCTTGTCT-TGAATTTTGGCTTTAACATTCTCAATGGTGTCACTGGGCTCGA 111553
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || | ||| || || || || | | || |||||||| ||||||||
Sbjct 111554 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 111602
>seq38
Length=10264441
Score = 109 bits (120), Expect = 3e-19
Identities = 164/229 (72%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| |||| || |||| ||||| || || ||| ||| || || ||||| || |||||
Sbjct 9540873 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 9540814
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
||||| | | || || || ||||| ||||||||||| | |||||| ||||| || ||
Sbjct 9540813 GAGTGTGTGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 9540754
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| |||||||||||| ||| ||| | ||| || | ||| ||||| || ||| |
Sbjct 9540753 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTC-ACGGGCTCGA 9540696
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || | ||| || || || || | | || |||||||| ||||||||
Sbjct 9540695 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 9540647
>seq407
Length=3256691
Score = 104 bits (114), Expect = 1e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| |||| || |||| ||||| || || ||| ||| || || ||||| || |||||
Sbjct 904218 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 904277
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || | || || || || | | ||||||||| | |||||| ||||| || ||
Sbjct 904278 GAGCGTGCGGCCATCCTCCAGCTGCTGGCTGGCAAATATCAGACGCTGCTGGTCAGGTGG 904337
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| |||||||||||| ||| ||| | ||| || | ||| ||||| | | ||| |
Sbjct 904338 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCATTGGGCTCGA 904396
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || | ||| || || || || || | || |||||||| ||||||||
Sbjct 904397 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 904445
>seq487
Length=2137387
Score = 102 bits (112), Expect = 5e-17
Identities = 159/225 (71%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 34483 CCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGT 34542
|||| || |||| ||||| || || ||| ||| || || ||||| || ||||| ||
Sbjct 1405224 CCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGC 1405283
Query 34543 GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACT 34602
|| || | || || || |||| ||||||||||| | || ||| ||||| || || |
Sbjct 1405284 GTGCGGCCATCCTCCAGCTGTTGGCCGGCAAATATCAGACACTGCTGGTCAGGTGGGATA 1405343
Query 34603 CCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTC 34661
||| |||||||| ||| ||| | |||||| | ||| ||||| | ||| || ||
Sbjct 1405344 CCCACCTTGTCT-TGAATTTTGGATTTAACATTCTCAATGGTGTCACTGGGCTCGACCTC 1405402
Query 34662 CACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| ||| || || ||||| || | || |||||| | ||||||||
Sbjct 1405403 AAGGGTGATGGTCTTACCCGTGAGGGTCTTCACAGAGATCTGCAT 1405447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314702151251348
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |