Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq599 477 9e-130 seq13 183 3e-41 >seq599 Length=1005688 Score = 477 bits (528), Expect = 9e-130 Identities = 562/758 (74%), Gaps = 2/758 (0%) Strand=Plus/Plus Query 34102 GCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGAAGGGGGACCGGAC 34161 |||| | ||| ||| ||| || ||||| | | ||| | |||||| || || || Sbjct 753840 GCAGCACCTGGGGCAGATGGAGCACATCCTTCGCGGCGGCGTCAGGAAGGACGATCGCAC 753899 Query 34162 CGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAATT 34221 ||| || |||||||| || |||||||||| ||||| || |||| ||| | | ||||| Sbjct 753900 CGGCACCGGGACCCTGTCGGTGTTCGGCATGCAGGCGCGCTACAGCCTGAGAGATGAATT 753959 Query 34222 TCCGCTGCTGACGACGAAACGT-GTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 ||| |||||||| || |||||| |||| ||||||||| || | |||||| ||||||| | Sbjct 753960 TCCTCTGCTGACAACCAAACGTTGTGTTCTGGAAGGGTGTTTTGGAGGAGTTGCTGTGCT 754019 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340 | | | ||| ||| ||| | || ||||| || ||| ||| ||||| |||||||| | Sbjct 754020 TTATCAAGGGACCCA-GAAAGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATG 754078 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACT 34400 | | || || |||||||||||||| | ||| ||| | | | || || || |||| Sbjct 754079 CCAATGGATCCCGAGACTTTCTGGATAGCTTGGGATTCTCCGCCAGAGAAGAAGGGGACT 754138 Query 34401 TGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG 34460 ||||||| || || || ||||||||||| || |||||||| || || | | | || Sbjct 754139 TGGGCCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATACAGAGATATGGATT 754198 Query 34461 CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGA 34520 | || ||||| ||||| |||| ||||| || || |||| |||||| | || | Sbjct 754199 CAGATTATTCAGGACAAGGAGTTGACCAACTACAAAGAGTGACTGACACCATCAAAACCA 754258 Query 34521 ACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGG 34580 |||||||||||||||| ||| | |||||||| ||||| || | ||||| |||||||||| Sbjct 754259 ACCCTGATGACAGAAGAATCATCATGTGCGCTTGGAATCCAAGAGATCTTCCTCTGATGG 754318 Query 34581 CGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCC 34640 |||| || || ||||| |||||||||| ||||||| | |||||| ||||||||||||| Sbjct 754319 CGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGAGGTGAATGGTGAGCTGTCCTGCC 754378 Query 34641 AGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACG 34700 |||| | || |||| ||||||||||| |||| ||||| ||||||| || || ||| Sbjct 754379 AGCTGCACCAGAGATCAGGAGACATGGGCCTAGGTGTGCCTTTCAACACCGCCAGCTACA 754438 Query 34701 CTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATA 34760 | ||||||||||| ||||||| || || ||| || || || || | || |||| Sbjct 754439 CCTTGCTCACGTACGTGATCGCGCACATCACGGGCCTGAAGCCAGGTGACTTTGTACATA 754498 Query 34761 CGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAAC 34820 | ||||| ||||| ||||| |||||||| |||||| ||| || || ||||| || | Sbjct 754499 CTTTGGGAGATGCCCATATTTACCTGAATCACATCAAGCCACTGAAAATTCAGCTTCAGC 754558 Query 34821 GAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGA 34858 |||| ||| |||| ||||| ||||||| ||| ||||| Sbjct 754559 GAGAACCCAGACCTTTCCCAAAGCTCAAGATTCTTCGA 754596 Score = 477 bits (528), Expect = 9e-130 Identities = 562/758 (74%), Gaps = 2/758 (0%) Strand=Plus/Minus Query 6487 TCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCG 6546 ||||| ||| ||||||| ||||| |||| ||| ||||| || ||||| || || | Sbjct 754596 TCGAAGAATCTTGAGCTTTGGGAAAGGTCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGG 754537 Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC 6606 || |||||| |||||||| ||||| ||||| ||||| ||||| || | || || || Sbjct 754536 CTTGATGTGATTCAGGTAAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTT 754477 Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666 || ||| || || ||||||| ||||||||||| | ||| || || ||||||| || Sbjct 754476 CAGGCCCGTGATGTGCGCGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGG 754417 Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726 ||| |||| ||||||||||| |||| || | ||||||||||||||||| |||||| | Sbjct 754416 CACACCTAGGCCCATGTCTCCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCAC 754357 Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 ||||||| |||||||||| ||||| || || |||||||||||||| ||||| | || Sbjct 754356 CTCGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGG 754297 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||| |||||||| | ||| ||||||||||||||||| || | |||||| |||| Sbjct 754296 ATTCCAAGCGCACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCAC 754237 Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGC 6906 || || ||||| |||| ||||| ||||| || | || | | | || || || Sbjct 754236 TCTTTGTAGTTGGTCAACTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGC 754177 Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG 6966 |||||| || ||||||||||| || || || ||||||||||| || || || | | | Sbjct 754176 CCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGA 754117 Query 6967 GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCG 7026 ||| ||| | |||||||||||||| || || | || |||||||| ||||| ||| Sbjct 754116 GAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTT 754057 Query 7027 GGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCAC 7086 ||| || ||||| || | ||| ||| ||| | | || ||||||| |||||| | || Sbjct 754056 GGAAGACAGCTCTTTAGCTTTC-TGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAAC 753998 Query 7087 GCCCTTCCAGTACAC-ACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATC 7145 ||||||||| |||| |||||| || |||||||| |||||||| | | ||| |||| | Sbjct 753997 ACCCTTCCAGAACACAACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGC 753938 Query 7146 GGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGC 7205 | ||||| |||||||||| || |||||||| || ||||| || || |||||| | || Sbjct 753937 GCGCCTGCATGCCGAACACCGACAGGGTCCCGGTGCCGGTGCGATCGTCCTTCCTGACGC 753878 Query 7206 CCTCCCTGAGGATCCGCGCCACCTGATACAGATACTGC 7243 | | | ||||| || ||| ||| ||| | |||| Sbjct 753877 CGCCGCGAAGGATGTGCTCCATCTGCCCCAGGTGCTGC 753840 >seq13 Length=13416947 Score = 183 bits (202), Expect = 3e-41 Identities = 137/161 (85%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| |||||||||||||| || || ||||| |||||||||| |||||||| | ||| Sbjct 11482344 GATCTTCCTCTGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAAC 11482403 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || |||| ||||||||||| |||| ||||| ||| Sbjct 11482404 GGTGAGCTGTCCTGCCAGCTGTACCAGAGATCAGGAGACATGGGCCTAGGTGTGCCTTTC 11482463 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || ||||| |||||||||||||||||||| || Sbjct 11482464 AACATTGCCAGCTACGCCCTGCTCACGTACATGATCGCGCA 11482504 Score = 183 bits (202), Expect = 3e-41 Identities = 137/161 (85%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||||||||||||||||||| ||||| || ||||||||||| ||||| |||| ||| Sbjct 11482504 TGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGCACACCTAGGCCC 11482445 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| |||| || || ||||||||||||||||| || ||| | |||||||| ||| Sbjct 11482444 ATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 11482385 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || |||||||||||||| ||||| Sbjct 11482384 CAGAGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATC 11482344 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || ||||| || ||| ||| ||||| |||||||| || | || || | Sbjct 11478144 CCACAAATGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCC 11478203 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||||||||||||| | ||| ||| | | | || || || ||||||||||| || | Sbjct 11478204 GAGACTTTCTGGATAGCTTGGGATTCTCCGCCAGAGAAGAAGGGGACTTGGGCCCAGTTT 11478263 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || |||||||| || || Sbjct 11478264 ATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATA 11478297 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || ||||||||||| || || || Sbjct 11478297 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCT 11478238 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| ||| | |||||||||||||| || || | || |||||||| ||| Sbjct 11478237 CTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 11478178 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || ||||| || | || |||| Sbjct 11478177 ACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGG 11478144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448222302928320