Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq9 187 2e-42 seq202 185 7e-42 seq599 138 9e-28 seq56 118 9e-22 seq13 105 6e-18 seq37 86.0 5e-12 >seq9 Length=13051293 Score = 187 bits (206), Expect = 2e-42 Identities = 371/544 (68%), Gaps = 9/544 (2%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || |||||||| | || || || | ||||| Sbjct 8822283 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATCAGCAAGAATGGTGACCTGCCC 8822224 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 ||||| || || | ||| |||| | |||| || | |||||| | | ||||| Sbjct 8822223 TGGCCGCCGCTCAGGAATTAATTCAGGTATTTCCAGAGAATGACCACAACCTCTTCAGTA 8822164 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || ||||| ||||| || |||| ||| Sbjct 8822163 GAAGATAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCCTGAGAAA 8822104 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | | ||||| || | ||||| ||| | |||||||| || | || || | || ||| Sbjct 8822103 AATCGACCTTTAAAGGATAGAATTAATGTAGTTCTCAGCAGGGAACTCAAGGGACCTCCA 8822044 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCA 2436 | || ||||| ||| |||| | |||| | ||| | || | || ||| | |||| Sbjct 8822043 CAAGGAGCTCATTTTCTTGCCAGAAGTCTGGATGATGCCTTAAAACTTACTGAACAACCA 8821984 Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496 |||||| | | | || || | |||||||||||||||||| | ||||| ||| |||| Sbjct 8821983 GAATTAGCAAATAAAGTAGACATGATTTGGATAATTGGTGGCCGCTCTGTTTATAAGGA- 8821925 Query 2497 AGCATTACAAGA-TCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGA 2555 ||| | | | | || | | | |||||| | |||||||| |||| | ||||| Sbjct 8821924 AGCCGTGGATCACCCAGGCCATCTTAAACTGTTTGTGACAAGGATCATGCAGGACTTTGA 8821865 Query 2556 ATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCC 2615 | || | || | || ||||||||| || | ||||| |||| || | |||| || Sbjct 8821864 AAGTCACACGTTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAATACCC 8821805 Query 2616 AGGTGTTCCCTC-TGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 |||||||||||| |||| || || || || || |||| |||| |||||| |||||| Sbjct 8821804 AGGTGTTCCCTCATGCC---CAGGAGGAGAAAGGCATTAAGTACATATTTGAAGTATATG 8821748 Query 2675 AAAA 2678 | || Sbjct 8821747 AGAA 8821744 >seq202 Length=3867970 Score = 185 bits (204), Expect = 7e-42 Identities = 188/245 (77%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| |||||||| ||| ||||| ||||||||||||| | ||||| Sbjct 1652941 GAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAAACGTAGCCACC 1652882 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || | | ||||| || || ||||| || ||||| || || ||||||| || Sbjct 1652881 TTCAGCAACAGCTATGGGGTGGTGGTCCAGCCTGCCTACAAGGACAAGTTGAACATTACC 1652822 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 ||||| ||||| |||||| |||| || ||||||||||| || || |||| ||||||||| Sbjct 1652821 GAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATACCACCCTGGAGGATGAAGGG 1652762 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||| |||| | || || || ||||| | ||||||||| ||||||| || || || Sbjct 1652761 TGTTACATGTGTCTCTTCAATACCTTTGGTTATGGGAAGATCTCAGGAACAGCCTGCCTC 1652702 Query 1521 ACCCT 1525 ||||| Sbjct 1652701 ACCCT 1652697 >seq599 Length=1005688 Score = 138 bits (152), Expect = 9e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | ||||||||||| |||||||||| || | ||| ||||| || | |||||| Sbjct 754553 AGCTGAATTTTCAGTGGCTTGATGTGATTCAGGTAAATATGGGCATCTCCCAAAGTATGT 754494 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | || ||||| || | || || || | ||| || |||| ||| || | ||| ||||| Sbjct 754493 ACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCGATCACGTACGTGAGCAAGGTGTAG 754434 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| || ||||| ||||| || ||||||||| |||||||||||| || ||||| Sbjct 754433 CTGGCGGTGTTGAAAGGCACACCTAGGCCCATGTCTCCTGATCTCTGGTGCAGCTGGCAG 754374 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || ||||| || || | | || ||||| | | | || ||||||||||| |||| Sbjct 754373 GACAGCTCACCATTCACCTCGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 754315 >seq56 Length=8603470 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 6351846 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 6351787 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 6351786 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 6351727 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 6351726 ATCGCCCTGTGGATGACCGA 6351707 >seq13 Length=13416947 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| || |||||||| || | || ||||||||| | || ||||| Sbjct 11482516 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 11482457 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || ||||||||| ||||||||||||||| ||||| || ||||| ||||| | Sbjct 11482456 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 11482397 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || || ||||| | | | || ||||||||||| |||| Sbjct 11482396 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 11482356 >seq37 Length=10690711 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/183 (71%), Gaps = 9/183 (5%) Strand=Plus/Minus Query 2227 CATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATG 2283 || || ||||||||||| | | ||||| || | ||||||||| | ||||||||| Sbjct 7720013 CAATTCCAAAAAATGACCACAACCTCTTCAGTAGAAGTTAAACAGAATCTAGTAATTATG 7719954 Query 2284 GGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGGC---CTTTGAACAACAGAATA 2340 | || ||||| ||||||||| || | | |||| | | |||| || ||||||| Sbjct 7719953 AGTAGGAAGACCTGGTTTTCAATTAC---TGAAAGTAATCAATCTTTAAAGTACAGAATT 7719897 Query 2341 AATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAA 2400 ||| | |||||||||||| | || | || ||||||| | ||| | ||| |||| || Sbjct 7719896 AATTTAGTTCTCAGTAGAGAACTCAGGGAACCACCACAAAGAGCTAATTTTCTTGCCTAA 7719837 Query 2401 AGT 2403 ||| Sbjct 7719836 AGT 7719834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414440651923984