Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq9 187 2e-42
seq202 185 7e-42
seq599 138 9e-28
seq56 118 9e-22
seq13 105 6e-18
seq37 86.0 5e-12
>seq9
Length=13051293
Score = 187 bits (206), Expect = 2e-42
Identities = 371/544 (68%), Gaps = 9/544 (2%)
Strand=Plus/Minus
Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199
|||||||| || | ||||| || | || |||||||| | || || || | |||||
Sbjct 8822283 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATCAGCAAGAATGGTGACCTGCCC 8822224
Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256
||||| || || | ||| |||| | |||| || | |||||| | | |||||
Sbjct 8822223 TGGCCGCCGCTCAGGAATTAATTCAGGTATTTCCAGAGAATGACCACAACCTCTTCAGTA 8822164
Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316
|| ||||||||| | || |||||||| || ||||| ||||| || |||| |||
Sbjct 8822163 GAAGATAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCCTGAGAAA 8822104
Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376
| | ||||| || | ||||| ||| | |||||||| || | || || | || |||
Sbjct 8822103 AATCGACCTTTAAAGGATAGAATTAATGTAGTTCTCAGCAGGGAACTCAAGGGACCTCCA 8822044
Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCA 2436
| || ||||| ||| |||| | |||| | ||| | || | || ||| | ||||
Sbjct 8822043 CAAGGAGCTCATTTTCTTGCCAGAAGTCTGGATGATGCCTTAAAACTTACTGAACAACCA 8821984
Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496
|||||| | | | || || | |||||||||||||||||| | ||||| ||| ||||
Sbjct 8821983 GAATTAGCAAATAAAGTAGACATGATTTGGATAATTGGTGGCCGCTCTGTTTATAAGGA- 8821925
Query 2497 AGCATTACAAGA-TCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGA 2555
||| | | | | || | | | |||||| | |||||||| |||| | |||||
Sbjct 8821924 AGCCGTGGATCACCCAGGCCATCTTAAACTGTTTGTGACAAGGATCATGCAGGACTTTGA 8821865
Query 2556 ATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCC 2615
| || | || | || ||||||||| || | ||||| |||| || | |||| ||
Sbjct 8821864 AAGTCACACGTTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAATACCC 8821805
Query 2616 AGGTGTTCCCTC-TGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674
|||||||||||| |||| || || || || || |||| |||| |||||| ||||||
Sbjct 8821804 AGGTGTTCCCTCATGCC---CAGGAGGAGAAAGGCATTAAGTACATATTTGAAGTATATG 8821748
Query 2675 AAAA 2678
| ||
Sbjct 8821747 AGAA 8821744
>seq202
Length=3867970
Score = 185 bits (204), Expect = 7e-42
Identities = 188/245 (77%), Gaps = 0/245 (0%)
Strand=Plus/Minus
Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340
||||| | ||||| |||||||| ||| ||||| ||||||||||||| | |||||
Sbjct 1652941 GAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAAACGTAGCCACC 1652882
Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400
|| || || | | ||||| || || ||||| || ||||| || || ||||||| ||
Sbjct 1652881 TTCAGCAACAGCTATGGGGTGGTGGTCCAGCCTGCCTACAAGGACAAGTTGAACATTACC 1652822
Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460
||||| ||||| |||||| |||| || ||||||||||| || || |||| |||||||||
Sbjct 1652821 GAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATACCACCCTGGAGGATGAAGGG 1652762
Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520
|| |||| |||| | || || || ||||| | ||||||||| ||||||| || || ||
Sbjct 1652761 TGTTACATGTGTCTCTTCAATACCTTTGGTTATGGGAAGATCTCAGGAACAGCCTGCCTC 1652702
Query 1521 ACCCT 1525
|||||
Sbjct 1652701 ACCCT 1652697
>seq599
Length=1005688
Score = 138 bits (152), Expect = 9e-28
Identities = 174/239 (73%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515
|| || | ||||||||||| |||||||||| || | ||| ||||| || | ||||||
Sbjct 754553 AGCTGAATTTTCAGTGGCTTGATGTGATTCAGGTAAATATGGGCATCTCCCAAAGTATGT 754494
Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575
| || ||||| || | || || || | ||| || |||| ||| || | ||| |||||
Sbjct 754493 ACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCGATCACGTACGTGAGCAAGGTGTAG 754434
Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635
||||| || ||||| ||||| || ||||||||| |||||||||||| || |||||
Sbjct 754433 CTGGCGGTGTTGAAAGGCACACCTAGGCCCATGTCTCCTGATCTCTGGTGCAGCTGGCAG 754374
Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
|| ||||| || || | | || ||||| | | | || ||||||||||| ||||
Sbjct 754373 GACAGCTCACCATTCACCTCGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 754315
>seq56
Length=8603470
Score = 118 bits (130), Expect = 9e-22
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | || ||||| ||||||||| | ||||| || |||||||||
Sbjct 6351846 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 6351787
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 6351786 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 6351727
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 6351726 ATCGCCCTGTGGATGACCGA 6351707
>seq13
Length=13416947
Score = 105 bits (116), Expect = 6e-18
Identities = 120/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| || || | ||| || |||||||| || | || ||||||||| | || |||||
Sbjct 11482516 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 11482457
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
||||| || ||||||||| ||||||||||||||| ||||| || ||||| ||||| |
Sbjct 11482456 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 11482397
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
|| || ||||| | | | || ||||||||||| ||||
Sbjct 11482396 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 11482356
>seq37
Length=10690711
Score = 86.0 bits (94), Expect = 5e-12
Identities = 130/183 (71%), Gaps = 9/183 (5%)
Strand=Plus/Minus
Query 2227 CATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATG 2283
|| || ||||||||||| | | ||||| || | ||||||||| | |||||||||
Sbjct 7720013 CAATTCCAAAAAATGACCACAACCTCTTCAGTAGAAGTTAAACAGAATCTAGTAATTATG 7719954
Query 2284 GGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGGC---CTTTGAACAACAGAATA 2340
| || ||||| ||||||||| || | | |||| | | |||| || |||||||
Sbjct 7719953 AGTAGGAAGACCTGGTTTTCAATTAC---TGAAAGTAATCAATCTTTAAAGTACAGAATT 7719897
Query 2341 AATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAA 2400
||| | |||||||||||| | || | || ||||||| | ||| | ||| |||| ||
Sbjct 7719896 AATTTAGTTCTCAGTAGAGAACTCAGGGAACCACCACAAAGAGCTAATTTTCTTGCCTAA 7719837
Query 2401 AGT 2403
|||
Sbjct 7719836 AGT 7719834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414440651923984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |