Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq38 95.1 1e-14
seq683 86.0 5e-12
seq407 86.0 5e-12
>seq38
Length=10264441
Score = 95.1 bits (104), Expect = 1e-14
Identities = 162/231 (70%), Gaps = 3/231 (1%)
Strand=Plus/Minus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | ||| | ||||| || || ||| |||||| || || || || || |
Sbjct 9540873 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 9540814
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175
||||| | | || || ||||||||||| |||||||| |||||||||||||| |||||
Sbjct 9540813 GAGTGTGTGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 9540754
Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235
| | | ||| ||||| ||||| ||||| || | | || || | | ||| |
Sbjct 9540753 G-ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCAC-GGGCTCGA 9540696
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| || | ||||| | || ||| | || || || |||||||| |||||||
Sbjct 9540695 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCATCT 9540645
>seq683
Length=714717
Score = 86.0 bits (94), Expect = 5e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | ||| | ||||| || || ||| |||||| || || || || || |
Sbjct 111375 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 111434
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175
|| || || | || || |||| ||| || |||||||| ||||||||||| || |||||
Sbjct 111435 GAGCGTGCGGCCATCCTCCAGCTATTTACCGGCAAATATCAGACGCTGCTGATCAGGTGG 111494
Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235
| | | ||| ||||| ||||| ||| | || | | || || || | ||| |
Sbjct 111495 G-ATACCCTCCTTGTCTTGAATTTTGGCTTTAACATTCTCAATGGTGTCACTGGGCTCGA 111553
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| || | ||||| | || ||| | || || || |||||||| |||||||
Sbjct 111554 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCATCT 111604
>seq407
Length=3256691
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | ||| | ||||| || || ||| |||||| || || || || || |
Sbjct 904218 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 904277
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175
|| || || | || || ||||| | || |||||||| |||||||||||||| |||||
Sbjct 904278 GAGCGTGCGGCCATCCTCCAGCTGCTGGCTGGCAAATATCAGACGCTGCTGGTCAGGTGG 904337
Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235
| | | ||| ||||| ||||| ||||| || | | || || | | ||| |
Sbjct 904338 G-ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCATTGGGCTCGA 904396
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || | ||||| | || ||||| || || || |||||||| |||||
Sbjct 904397 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 904445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429508137717428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |