Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq599 279 4e-70
seq13 154 1e-32
seq772 96.9 3e-15
seq9 95.1 1e-14
seq17 91.5 1e-13
>seq599
Length=1005688
Score = 279 bits (308), Expect = 4e-70
Identities = 469/683 (69%), Gaps = 3/683 (0%)
Strand=Plus/Minus
Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669
||||||||| |||||| || | || |||||||| |||| || | | ||| | ||||
Sbjct 754578 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGT 754520
Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729
| | || |||||||||| || || ||||| || || || | || || |||| ||| |
Sbjct 754519 AAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCG 754460
Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789
| |||| ||||||||| | | |||||||||| |||| || ||||| || || |||||||
Sbjct 754459 CGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGT 754400
Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 29849
| ||||| ||||||| |||||||| || ||||| || | | |||| ||||| || |
Sbjct 754399 CTCCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCAGA 754340
Query 29850 TGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGA 29909
||||||||| ||||| || ||||| ||| | ||| | || ||||| || |||| ||
Sbjct 754339 GGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGA 754280
Query 29910 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 29969
|||| | ||||| || |||||| | ||||| ||| | |||| || || || |
Sbjct 754279 TGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGTAGTTGGTCAA 754220
Query 29970 CCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACT 30029
| || || || || |||| | |||||||||||||
Sbjct 754219 CTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACT 754160
Query 30030 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 30089
|||| || || || || |||| ||| || ||||| ||| ||| ||| | ||||
Sbjct 754159 GGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCA 754100
Query 30090 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGG 30149
|||||||| ||| || ||||| |||||||| || || ||||| || |||||||| |
Sbjct 754099 GAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAG 754040
Query 30150 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC-C 30208
||| ||| || ||| || ||||||| |||||||| || ||||||| || ||
Sbjct 754039 -CTTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACACAA 753981
Query 30209 CTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAAC 30268
| ||||| || || || ||||| | | | |||| ||| | |||||| || |||
Sbjct 753980 CGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAAC 753921
Query 30269 ATGGACAAGACTCCCGTGCCTGT 30291
| |||| | || ||||| ||
Sbjct 753920 ACCGACAGGGTCCCGGTGCCGGT 753898
>seq13
Length=13416947
Score = 154 bits (170), Expect = 1e-32
Identities = 133/165 (81%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| ||| || |||||||||||||| || | ||||||||| ||||| || |||
Sbjct 11482516 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 11482457
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| ||||| |||||||| |||||||| || ||||| |||| |
Sbjct 11482456 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 11482397
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||| ||||| || | ||||||||| ||||| || ||||| |||
Sbjct 11482396 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAGA 11482352
Score = 98.7 bits (108), Expect = 8e-16
Identities = 113/151 (75%), Gaps = 1/151 (1%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||||||||||||||| || || || || |||| ||| || ||||| ||| |||
Sbjct 11478285 AAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAAT 11478226
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| | |||| |||||||| ||| || ||||| |||||||| || || |||||
Sbjct 11478225 CCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 11478166
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167
|| |||||||| | |||||||| || ||||
Sbjct 11478165 GACAGCTCTTTAGCATTTGTGGATCC-CTGA 11478136
>seq772
Length=448342
Score = 96.9 bits (106), Expect = 3e-15
Identities = 171/242 (71%), Gaps = 12/242 (5%)
Strand=Plus/Minus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || || || || || |||||||| |||| || | || || |
Sbjct 145484 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 145425
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 145424 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 145365
Query 114382 CTGCTTACC-TCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 114439
||| ||||| ||| | ||||| | | ||| | ||| | || | | || || ||
Sbjct 145364 CTGTTTACCTTCTAT-TGAAGAGGCTGTCGTC-ATTCTCTGGAAATACCTGAATTCATT- 145308
Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGAC 114497
||| | || |||| ||||| ||||| || || ||||| |||||| ||| ||||
Sbjct 145307 -----TCTGAGTGGTGGCCAGGGCAGGTCTCCCTTCTTGCCGATACCCATGTTCTGGGAC 145253
Query 114498 AC 114499
||
Sbjct 145252 AC 145251
>seq9
Length=13051293
Score = 95.1 bits (104), Expect = 1e-14
Identities = 180/260 (69%), Gaps = 10/260 (4%)
Strand=Plus/Plus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || | || || ||||||||||| ||||| || | || || |
Sbjct 8822032 ATGAGCTCCTTGTGGAGGTCCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTT 8822091
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| ||||| ||| || || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 8822092 TAAAGGTCGATTTTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 8822151
Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440
||| ||| || | ||||| || | |||| | ||| | || | | || |
Sbjct 8822152 CTGTTTATCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATACCTGAATT------ 8822204
Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499
|| || | ||| |||| ||||| || || || || | |||||||||| ||||| ||
Sbjct 8822205 AATTCCTGAGCGGCGGCCAGGGCAGGTCACCATTCTTGCTGATGCCCATGTTCTGG-GAC 8822263
Query 114500 GCTGCCACGATACCGTTCAG 114519
| || ||||| | ||| ||
Sbjct 8822264 ACAGCGACGATGCAGTTTAG 8822283
>seq17
Length=12262279
Score = 91.5 bits (100), Expect = 1e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| || ||||||||||| ||||| || | || || | | ||||| |||||| || ||
Sbjct 1279978 TTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 1280037
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| ||||| |||||||| ||||||| ||||| ||| ||
Sbjct 1280038 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTATCT 1280085
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406127776984216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |