Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq599 279 4e-70 seq13 154 1e-32 seq772 96.9 3e-15 seq9 95.1 1e-14 seq17 91.5 1e-13 >seq599 Length=1005688 Score = 279 bits (308), Expect = 4e-70 Identities = 469/683 (69%), Gaps = 3/683 (0%) Strand=Plus/Minus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||||| |||||| || | || |||||||| |||| || | | ||| | |||| Sbjct 754578 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGT 754520 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | || |||||||||| || || ||||| || || || | || || |||| ||| | Sbjct 754519 AAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCG 754460 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | |||| ||||||||| | | |||||||||| |||| || ||||| || || ||||||| Sbjct 754459 CGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGT 754400 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 29849 | ||||| ||||||| |||||||| || ||||| || | | |||| ||||| || | Sbjct 754399 CTCCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCAGA 754340 Query 29850 TGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGA 29909 ||||||||| ||||| || ||||| ||| | ||| | || ||||| || |||| || Sbjct 754339 GGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGA 754280 Query 29910 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 29969 |||| | ||||| || |||||| | ||||| ||| | |||| || || || | Sbjct 754279 TGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGTAGTTGGTCAA 754220 Query 29970 CCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACT 30029 | || || || || |||| | ||||||||||||| Sbjct 754219 CTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACT 754160 Query 30030 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 30089 |||| || || || || |||| ||| || ||||| ||| ||| ||| | |||| Sbjct 754159 GGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCA 754100 Query 30090 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGG 30149 |||||||| ||| || ||||| |||||||| || || ||||| || |||||||| | Sbjct 754099 GAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAG 754040 Query 30150 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC-C 30208 ||| ||| || ||| || ||||||| |||||||| || ||||||| || || Sbjct 754039 -CTTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACACAA 753981 Query 30209 CTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAAC 30268 | ||||| || || || ||||| | | | |||| ||| | |||||| || ||| Sbjct 753980 CGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAAC 753921 Query 30269 ATGGACAAGACTCCCGTGCCTGT 30291 | |||| | || ||||| || Sbjct 753920 ACCGACAGGGTCCCGGTGCCGGT 753898 >seq13 Length=13416947 Score = 154 bits (170), Expect = 1e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||||||||| || | ||||||||| ||||| || ||| Sbjct 11482516 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 11482457 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| ||||| |||||||| |||||||| || ||||| |||| | Sbjct 11482456 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 11482397 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||||||||| ||||| || ||||| ||| Sbjct 11482396 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAGA 11482352 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||| ||| || ||||| ||| ||| Sbjct 11478285 AAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAAT 11478226 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| | |||| |||||||| ||| || ||||| |||||||| || || ||||| Sbjct 11478225 CCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 11478166 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167 || |||||||| | |||||||| || |||| Sbjct 11478165 GACAGCTCTTTAGCATTTGTGGATCC-CTGA 11478136 >seq772 Length=448342 Score = 96.9 bits (106), Expect = 3e-15 Identities = 171/242 (71%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || || | Sbjct 145484 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 145425 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 145424 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 145365 Query 114382 CTGCTTACC-TCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 114439 ||| ||||| ||| | ||||| | | ||| | ||| | || | | || || || Sbjct 145364 CTGTTTACCTTCTAT-TGAAGAGGCTGTCGTC-ATTCTCTGGAAATACCTGAATTCATT- 145308 Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGAC 114497 ||| | || |||| ||||| ||||| || || ||||| |||||| ||| |||| Sbjct 145307 -----TCTGAGTGGTGGCCAGGGCAGGTCTCCCTTCTTGCCGATACCCATGTTCTGGGAC 145253 Query 114498 AC 114499 || Sbjct 145252 AC 145251 >seq9 Length=13051293 Score = 95.1 bits (104), Expect = 1e-14 Identities = 180/260 (69%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || | || || ||||||||||| ||||| || | || || | Sbjct 8822032 ATGAGCTCCTTGTGGAGGTCCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTT 8822091 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| ||| || || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 8822092 TAAAGGTCGATTTTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 8822151 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 ||| ||| || | ||||| || | |||| | ||| | || | | || | Sbjct 8822152 CTGTTTATCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATACCTGAATT------ 8822204 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 || || | ||| |||| ||||| || || || || | |||||||||| ||||| || Sbjct 8822205 AATTCCTGAGCGGCGGCCAGGGCAGGTCACCATTCTTGCTGATGCCCATGTTCTGG-GAC 8822263 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 8822264 ACAGCGACGATGCAGTTTAG 8822283 >seq17 Length=12262279 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || ||||||||||| ||||| || | || || | | ||||| |||||| || || Sbjct 1279978 TTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 1280037 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| ||| || Sbjct 1280038 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTATCT 1280085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406127776984216