Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq526 295 6e-75 seq630 266 3e-66 seq29 118 9e-22 seq2 107 2e-18 seq419 96.9 3e-15 seq248 96.9 3e-15 seq57 96.9 3e-15 seq85 95.1 1e-14 seq62 82.4 7e-11 >seq526 Length=1402496 Score = 295 bits (326), Expect = 6e-75 Identities = 595/876 (68%), Gaps = 10/876 (1%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||| ||||| ||| || ||||| ||||| || ||||| | |||||||| ||| Sbjct 113394 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCC 113453 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAA- 4378 ||||| ||||| ||||| | || || || | | || | | |||| Sbjct 113454 ATAAAGTCAAATGGATTCTCTATTCTGAAAACCTTGCTAAAACCCAG---TTCCAGCATG 113510 Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| || ||||| || || || || |||| || ||| || || ||||| | Sbjct 113511 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTC 113570 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 |||||| | || | || | ||||||||||||||| || || | | |||| || Sbjct 113571 CACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCATTGATAGTTATTTC 113630 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 | ||| | | || | |||||||| | ||||| || | |||| | || ||||||| Sbjct 113631 TCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAATG 113690 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 | || ||||| || |||||||||| || || | |||||| || | || ||||| | Sbjct 113691 TGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGGCATCAG 113750 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 |||| || || ||||| ||||| | ||||| || ||||||||| | |||||||| || Sbjct 113751 TCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCCTTCCAC 113810 Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTA 4737 || ||||| ||||| | || || | | ||| ||||||| |||||| | Sbjct 113811 TGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCT-CTTTGTCCCCAATCCAGCGCA 113869 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA--ATTT 4795 | ||||| | || || || || || || || || || | || || || || | | || Sbjct 113870 AGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 113929 Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 | ||| || || |||| || |||||||| || || || | ||||||||||||||| Sbjct 113930 CCCTTT--CATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCAGAATG 113987 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||| ||||| || ||||| || || || || || || | ||||||| | |||| ||| Sbjct 113988 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATCTGAAGTTC 114047 Query 4916 GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGC 4975 | | ||||| || || |||||||| |||||||| || ||||| ||||||| || || Sbjct 114048 TTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGGAAAGC 114107 Query 4976 CAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATC 5035 || ||| |||||||||||||| || |||||||| || || |||||| | | || Sbjct 114108 CAGAACGTGAGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCCGTATGTC 114167 Query 5036 TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGA 5095 || | | || || || ||| | |||| || || || ||||| || || | ||| Sbjct 114168 CTTGGACAGGTCTACCTCCTCAGCGCTCCAGAAGGAGGCGTCCGCCTTCTTATGCATCTG 114227 Query 5096 CCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||| || | | |||| || || | |||||||| Sbjct 114228 CCAGATGTTGTGGTACTCGATGGGGAAAATGACAAA 114263 >seq630 Length=879232 Score = 266 bits (294), Expect = 3e-66 Identities = 563/825 (68%), Gaps = 24/825 (3%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| ||| || ||||| ||| | || ||||| | | |||||| |||||||| ||||| Sbjct 417551 TACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAATATTCTCCATAAAGTCAAA 417610 Query 4331 CGGATTAGTTGCGTTGTAATGTTTT-TCACACT---TTAGAGCTACAAGCAATCGGTCAG 4386 ||||| | | || || || | | || || ||| | ||| || ||| | Sbjct 417611 TGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGC-ATAAG---TCTGTCTG 417666 Query 4387 CTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTA 4446 | ||||| || || || || |||| || ||| || || ||||| | ||||||| | Sbjct 417667 CCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCA 417726 Query 4447 GCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT-TTTATT 4505 | || | ||||| |||||||| || || | | ||||| ||| ||| | Sbjct 417727 AGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTTCTC 417786 Query 4506 TTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGC 4565 || | |||||||| | ||||| || | |||| | || ||||||||||| || Sbjct 417787 CCGGCTCT-GATGGTTTGTGTACTAGGTGTTGGAACATCAGGCAAGCAAAATCACAGTGT 417845 Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625 ||||| || |||||||||| ||||| |||||||| || | || ||||| | |||| Sbjct 417846 AAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGT 417905 Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685 || |||||||| ||||| | || || || ||||||||||| | |||||| || || ||| Sbjct 417906 TTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTCCACTGCAGCA 417965 Query 4686 AACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAG 4745 || || | | || ||| | ||| ||||||| |||||| || |||| | Sbjct 417966 AAGGC-AGT--TC---ACCATAGGTAGCCT-CTTTGTCCCCAATCCAGCGCAAGGCCCGG 418018 Query 4746 TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA--ATTTACTTTTTT 4803 | || || ||||| || || || || || | || || || || | | || | ||| Sbjct 418019 TCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTCG 418078 Query 4804 CAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTT 4862 | |||| |||| ||||| ||||| | || || |||||||||||||||||||| || Sbjct 418079 C---TGGGATCTTTTATATACGTGTCAGTAAGGAGACTATACATTTCAGAATGTATGTTG 418135 Query 4863 TCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAA 4922 || || |||| || ||||| || || || | || ||||| | |||||||| | | | Sbjct 418136 TCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAACTTCTTGGCTA 418195 Query 4923 AATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACA 4982 |||| || || |||||||| |||||||| |||||||| |||||||| || || ||| Sbjct 418196 AATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGAAACTCAGAACG 418255 Query 4983 TGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTT 5042 || |||||||||| || || ||||| || || |||||| | | || || | Sbjct 418256 TGGGATATAAAGTGTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGAATGTCCTTGGAC 418315 Query 5043 AAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG-CTTTTTT 5086 || || ||||| | |||||||| || || |||| ||| ||| Sbjct 418316 GGGTCCACCTCTTCGGCGGTCCAAAAGGAGGCCTCCGTCTTGTTT 418360 >seq29 Length=11376298 Score = 118 bits (130), Expect = 9e-22 Identities = 129/171 (75%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| ||||| || || | | ||||| ||||| ||| || || |||| Sbjct 49849 AGCTCTTGTGAAAACAGATATACAGATAGCGCTTCCTTCTGGGTGTTACTGAAGAGTAGC 49908 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | ||||| ||||| | ||||||||||| || || || | ||||| |||||| Sbjct 49909 TCCATGGTCTGGCTTGGCTGCAAAACACTTTATTGATGTAGGATCTGGTGTCATAGATGA 49968 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 ||| ||||||||||| | ||| |||| ||||||||||||| |||||| Sbjct 49969 AGATTATAGAGGAAATGCTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAA 50019 >seq2 Length=18007423 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| |||||||| || | || ||||| | |||| || || Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| ||||||||||| || ||||| ||| Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCT 1941368 Query 4692 AC 4693 || Sbjct 1941367 AC 1941366 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 1939023 GGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 1938964 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 1938963 GCAATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 1938906 >seq419 Length=1896530 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 31769 CTAGTTAAAACCGATATTCAAATTTCTTTACCTTCA--GGGTGCTACGGACGAATAGCTC 31826 || || ||||| || ||||| || || | ||||| ||||| || ||| || ||| || Sbjct 1451175 CTTGTGAAAACAGACATTCAGATAACTCTTCCTTCTCTGGGTGTTATGGAAGAGTAGTTC 1451116 Query 31827 CTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAG 31886 | ||||| ||||| | ||||||||||| || || || | ||||| ||| || | Sbjct 1451115 CACAGTCTGGCTTGGCTGCAAAACACTTTATTGATGTAGGAACTGGTGTCATAAATGAAA 1451056 Query 31887 ACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 | ||||||||||| ||||| |||| ||||||||||||| Sbjct 1451055 ATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGG 1451016 >seq248 Length=3346475 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 4825 TGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTT-CTATAGCAATCTGAAATCCG 4883 |||| || || |||||||| | ||||||||||| |||| | |||||||| || || || Sbjct 2858481 TGTCAATAAGGAGGCTATATACTTCAGAATGTAGCTTTTCCCATAGCAATTTGGAAGCCA 2858422 Query 4884 TAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCG 4943 || || || |||||||| | ||| |||| | | |||| ||||| || |||| Sbjct 2858421 TAGAAACAGTGGGCTTCTGTAAGCTGAGCTTCCTGGCTAAATTGCTCTACCTAGCTTTCA 2858362 Query 4944 TTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACAT 4983 |||||||| || ||| | ||| ||| ||| |||| ||||| Sbjct 2858361 TTTACTATGCCATCAGTTGCTTCAACAAAAGCCAGAACAT 2858322 >seq57 Length=8566406 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978 |||||| | || || || ||||| ||||| || || ||||||||||||||||| || || Sbjct 1425760 ACAAAAACCTT--ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAA 1425817 Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTT 5038 || ||||| || || |||| || || | ||||| || |||||||| |||| ||| || Sbjct 1425818 AATGTGAGAGATGAAATACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGCAGATCCTT 1425877 Query 5039 AGTTAAATCAAC 5050 | ||| ||||| Sbjct 1425878 TGATAAGTCAAC 1425889 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 1408748 TGATACTCTGAGACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 1408807 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 1408808 ATAAAATCAAAAGGATT 1408824 >seq85 Length=7184330 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| || ||||| || | | ||||||||||| || | || |||| |||| | Sbjct 3278678 GTGAAAACGGACATTCAGATAGCCCTTCCTTCAGGGTGTTAGACAAGAGTAGC-CCTACA 3278736 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTAT-AGATTCAGACTA 31890 ||||| ||||| | ||||||||||| || || || || ||| | || |||| ||| || Sbjct 3278737 TCTGGCTTGGCTGAAAAACACTTTATTGATGTAGGAGCTGGTATCATAAGATAAAGATTA 3278796 Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||||||| |||| | ||| | || |||||||| Sbjct 3278797 TAGAGGAAAGGTTGATACTGTACTATTCAATTTTGG 3278832 >seq62 Length=12728985 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/157 (72%), Gaps = 6/157 (4%) Strand=Plus/Minus Query 34293 CAAAGGAAACAGCAAAAAC---ATACAAATGGTTCAGTATATTTATAAAAACACATCTTC 34349 ||||| | |||| || ||| | ||||||||| ||||||||||| ||| ||||| Sbjct 9835796 CAAAGAAGACAGAAAGAACGACAAACAAATGGTCCAGTATATTTACAAATACACA---AG 9835740 Query 34350 TTACGGAGATCCTCTAATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGC 34409 ||| || || || || |||||||||| ||||||| ||| || ||| |||| || Sbjct 9835739 TTATCCTGACCCCATACTGCTGATGAAAAGTGCTAGAAATAATTGTTGGTCTAAAGATGC 9835680 Query 34410 TGAGTACGGTCTTTACTCAGTATATCAAGGAGGAATA 34446 || || || || || || | |||||||| |||||| Sbjct 9835679 AGAATATGGACTCTATTCCATCTATCAAGGGGGAATA 9835643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427012355402948