Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq526 295 6e-75
seq630 266 3e-66
seq29 118 9e-22
seq2 107 2e-18
seq419 96.9 3e-15
seq248 96.9 3e-15
seq57 96.9 3e-15
seq85 95.1 1e-14
seq62 82.4 7e-11
>seq526
Length=1402496
Score = 295 bits (326), Expect = 6e-75
Identities = 595/876 (68%), Gaps = 10/876 (1%)
Strand=Plus/Plus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || ||| ||||| ||| || ||||| ||||| || ||||| | |||||||| |||
Sbjct 113394 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCC 113453
Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAA- 4378
||||| ||||| ||||| | || || || | | || | | ||||
Sbjct 113454 ATAAAGTCAAATGGATTCTCTATTCTGAAAACCTTGCTAAAACCCAG---TTCCAGCATG 113510
Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438
|| ||| || ||||| || || || || |||| || ||| || || ||||| |
Sbjct 113511 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTC 113570
Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498
|||||| | || | || | ||||||||||||||| || || | | |||| ||
Sbjct 113571 CACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCATTGATAGTTATTTC 113630
Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558
| ||| | | || | |||||||| | ||||| || | |||| | || |||||||
Sbjct 113631 TCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAATG 113690
Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618
| || ||||| || |||||||||| || || | |||||| || | || ||||| |
Sbjct 113691 TGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGGCATCAG 113750
Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678
|||| || || ||||| ||||| | ||||| || ||||||||| | |||||||| ||
Sbjct 113751 TCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCCTTCCAC 113810
Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTA 4737
|| ||||| ||||| | || || | | ||| ||||||| |||||| |
Sbjct 113811 TGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCT-CTTTGTCCCCAATCCAGCGCA 113869
Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA--ATTT 4795
| ||||| | || || || || || || || || || | || || || || | | ||
Sbjct 113870 AGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 113929
Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855
| ||| || || |||| || |||||||| || || || | |||||||||||||||
Sbjct 113930 CCCTTT--CATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCAGAATG 113987
Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
||| ||||| || ||||| || || || || || || | ||||||| | |||| |||
Sbjct 113988 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATCTGAAGTTC 114047
Query 4916 GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGC 4975
| | ||||| || || |||||||| |||||||| || ||||| ||||||| || ||
Sbjct 114048 TTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGGAAAGC 114107
Query 4976 CAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATC 5035
|| ||| |||||||||||||| || |||||||| || || |||||| | | ||
Sbjct 114108 CAGAACGTGAGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCCGTATGTC 114167
Query 5036 TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGA 5095
|| | | || || || ||| | |||| || || || ||||| || || | |||
Sbjct 114168 CTTGGACAGGTCTACCTCCTCAGCGCTCCAGAAGGAGGCGTCCGCCTTCTTATGCATCTG 114227
Query 5096 CCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131
||| || | | |||| || || | ||||||||
Sbjct 114228 CCAGATGTTGTGGTACTCGATGGGGAAAATGACAAA 114263
>seq630
Length=879232
Score = 266 bits (294), Expect = 3e-66
Identities = 563/825 (68%), Gaps = 24/825 (3%)
Strand=Plus/Plus
Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330
||||| ||| || ||||| ||| | || ||||| | | |||||| |||||||| |||||
Sbjct 417551 TACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAATATTCTCCATAAAGTCAAA 417610
Query 4331 CGGATTAGTTGCGTTGTAATGTTTT-TCACACT---TTAGAGCTACAAGCAATCGGTCAG 4386
||||| | | || || || | | || || ||| | ||| || ||| |
Sbjct 417611 TGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGC-ATAAG---TCTGTCTG 417666
Query 4387 CTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTA 4446
| ||||| || || || || |||| || ||| || || ||||| | ||||||| |
Sbjct 417667 CCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCA 417726
Query 4447 GCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT-TTTATT 4505
| || | ||||| |||||||| || || | | ||||| ||| ||| |
Sbjct 417727 AGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTTCTC 417786
Query 4506 TTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGC 4565
|| | |||||||| | ||||| || | |||| | || ||||||||||| ||
Sbjct 417787 CCGGCTCT-GATGGTTTGTGTACTAGGTGTTGGAACATCAGGCAAGCAAAATCACAGTGT 417845
Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625
||||| || |||||||||| ||||| |||||||| || | || ||||| | ||||
Sbjct 417846 AAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGT 417905
Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685
|| |||||||| ||||| | || || || ||||||||||| | |||||| || || |||
Sbjct 417906 TTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTCCACTGCAGCA 417965
Query 4686 AACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAG 4745
|| || | | || ||| | ||| ||||||| |||||| || |||| |
Sbjct 417966 AAGGC-AGT--TC---ACCATAGGTAGCCT-CTTTGTCCCCAATCCAGCGCAAGGCCCGG 418018
Query 4746 TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA--ATTTACTTTTTT 4803
| || || ||||| || || || || || | || || || || | | || | |||
Sbjct 418019 TCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTCG 418078
Query 4804 CAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTT 4862
| |||| |||| ||||| ||||| | || || |||||||||||||||||||| ||
Sbjct 418079 C---TGGGATCTTTTATATACGTGTCAGTAAGGAGACTATACATTTCAGAATGTATGTTG 418135
Query 4863 TCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAA 4922
|| || |||| || ||||| || || || | || ||||| | |||||||| | | |
Sbjct 418136 TCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAACTTCTTGGCTA 418195
Query 4923 AATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACA 4982
|||| || || |||||||| |||||||| |||||||| |||||||| || || |||
Sbjct 418196 AATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGAAACTCAGAACG 418255
Query 4983 TGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTT 5042
|| |||||||||| || || ||||| || || |||||| | | || || |
Sbjct 418256 TGGGATATAAAGTGTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGAATGTCCTTGGAC 418315
Query 5043 AAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG-CTTTTTT 5086
|| || ||||| | |||||||| || || |||| ||| |||
Sbjct 418316 GGGTCCACCTCTTCGGCGGTCCAAAAGGAGGCCTCCGTCTTGTTT 418360
>seq29
Length=11376298
Score = 118 bits (130), Expect = 9e-22
Identities = 129/171 (75%), Gaps = 3/171 (2%)
Strand=Plus/Plus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
||| || || ||||| ||||| || || | | ||||| ||||| ||| || || ||||
Sbjct 49849 AGCTCTTGTGAAAACAGATATACAGATAGCGCTTCCTTCTGGGTGTTACTGAAGAGTAGC 49908
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
||| | ||||| ||||| | ||||||||||| || || || | ||||| ||||||
Sbjct 49909 TCCATGGTCTGGCTTGGCTGCAAAACACTTTATTGATGTAGGATCTGGTGTCATAGATGA 49968
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932
||| ||||||||||| | ||| |||| ||||||||||||| ||||||
Sbjct 49969 AGATTATAGAGGAAATGCTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAA 50019
>seq2
Length=18007423
Score = 107 bits (118), Expect = 2e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| |||||||| || | || ||||| | |||| || ||
Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| ||||||||||| || ||||| |||
Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCT 1941368
Query 4692 AC 4693
||
Sbjct 1941367 AC 1941366
Score = 91.5 bits (100), Expect = 1e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868
|| |||| || |||||||| || || || |||||||||||||||||||| ||||| ||
Sbjct 1939023 GGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 1938964
Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926
||||| || || || || || || | |||||||| | |||||||| | | |||||
Sbjct 1938963 GCAATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 1938906
>seq419
Length=1896530
Score = 96.9 bits (106), Expect = 3e-15
Identities = 118/160 (74%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 31769 CTAGTTAAAACCGATATTCAAATTTCTTTACCTTCA--GGGTGCTACGGACGAATAGCTC 31826
|| || ||||| || ||||| || || | ||||| ||||| || ||| || ||| ||
Sbjct 1451175 CTTGTGAAAACAGACATTCAGATAACTCTTCCTTCTCTGGGTGTTATGGAAGAGTAGTTC 1451116
Query 31827 CTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAG 31886
| ||||| ||||| | ||||||||||| || || || | ||||| ||| || |
Sbjct 1451115 CACAGTCTGGCTTGGCTGCAAAACACTTTATTGATGTAGGAACTGGTGTCATAAATGAAA 1451056
Query 31887 ACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926
| ||||||||||| ||||| |||| |||||||||||||
Sbjct 1451055 ATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGG 1451016
>seq248
Length=3346475
Score = 96.9 bits (106), Expect = 3e-15
Identities = 118/160 (74%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 4825 TGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTT-CTATAGCAATCTGAAATCCG 4883
|||| || || |||||||| | ||||||||||| |||| | |||||||| || || ||
Sbjct 2858481 TGTCAATAAGGAGGCTATATACTTCAGAATGTAGCTTTTCCCATAGCAATTTGGAAGCCA 2858422
Query 4884 TAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCG 4943
|| || || |||||||| | ||| |||| | | |||| ||||| || ||||
Sbjct 2858421 TAGAAACAGTGGGCTTCTGTAAGCTGAGCTTCCTGGCTAAATTGCTCTACCTAGCTTTCA 2858362
Query 4944 TTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACAT 4983
|||||||| || ||| | ||| ||| ||| |||| |||||
Sbjct 2858361 TTTACTATGCCATCAGTTGCTTCAACAAAAGCCAGAACAT 2858322
>seq57
Length=8566406
Score = 96.9 bits (106), Expect = 3e-15
Identities = 101/132 (77%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978
|||||| | || || || ||||| ||||| || || ||||||||||||||||| || ||
Sbjct 1425760 ACAAAAACCTT--ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAA 1425817
Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTT 5038
|| ||||| || || |||| || || | ||||| || |||||||| |||| ||| ||
Sbjct 1425818 AATGTGAGAGATGAAATACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGCAGATCCTT 1425877
Query 5039 AGTTAAATCAAC 5050
| ||| |||||
Sbjct 1425878 TGATAAGTCAAC 1425889
Score = 86.0 bits (94), Expect = 5e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || || || ||||| || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 1408748 TGATACTCTGAGACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 1408807
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 1408808 ATAAAATCAAAAGGATT 1408824
>seq85
Length=7184330
Score = 95.1 bits (104), Expect = 1e-14
Identities = 116/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831
|| ||||| || ||||| || | | ||||||||||| || | || |||| |||| |
Sbjct 3278678 GTGAAAACGGACATTCAGATAGCCCTTCCTTCAGGGTGTTAGACAAGAGTAGC-CCTACA 3278736
Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTAT-AGATTCAGACTA 31890
||||| ||||| | ||||||||||| || || || || ||| | || |||| ||| ||
Sbjct 3278737 TCTGGCTTGGCTGAAAAACACTTTATTGATGTAGGAGCTGGTATCATAAGATAAAGATTA 3278796
Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926
||||||||| |||| | ||| | || ||||||||
Sbjct 3278797 TAGAGGAAAGGTTGATACTGTACTATTCAATTTTGG 3278832
>seq62
Length=12728985
Score = 82.4 bits (90), Expect = 7e-11
Identities = 113/157 (72%), Gaps = 6/157 (4%)
Strand=Plus/Minus
Query 34293 CAAAGGAAACAGCAAAAAC---ATACAAATGGTTCAGTATATTTATAAAAACACATCTTC 34349
||||| | |||| || ||| | ||||||||| ||||||||||| ||| |||||
Sbjct 9835796 CAAAGAAGACAGAAAGAACGACAAACAAATGGTCCAGTATATTTACAAATACACA---AG 9835740
Query 34350 TTACGGAGATCCTCTAATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGC 34409
||| || || || || |||||||||| ||||||| ||| || ||| |||| ||
Sbjct 9835739 TTATCCTGACCCCATACTGCTGATGAAAAGTGCTAGAAATAATTGTTGGTCTAAAGATGC 9835680
Query 34410 TGAGTACGGTCTTTACTCAGTATATCAAGGAGGAATA 34446
|| || || || || || | |||||||| ||||||
Sbjct 9835679 AGAATATGGACTCTATTCCATCTATCAAGGGGGAATA 9835643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427012355402948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |