Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq599 307 8e-79
seq13 125 5e-24
>seq599
Length=1005688
Score = 307 bits (340), Expect = 8e-79
Identities = 486/687 (71%), Gaps = 11/687 (2%)
Strand=Plus/Minus
Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163
||||||||| |||||| || | || |||||| | ||||| || | | ||||| |||||
Sbjct 754578 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGT 754520
Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223
| | || || ||||||| || || ||||| || || || | || || |||| ||| |
Sbjct 754519 AAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCG 754460
Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283
| |||| ||||||||| | | |||||||||| |||| || || || || || |||||||
Sbjct 754459 CGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGT 754400
Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCAT-CGCTTACGTAAAACTGACAT 27342
| || || ||||||| ||||| || || ||||| |||| | | | |||| ||||| ||
Sbjct 754399 CTCCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCT-CGTAGAACTGGCAG 754341
Query 27343 ATGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCAC 27399
| ||| ||||| ||||| || ||||| |||| ||| ||| | || ||||| ||||||
Sbjct 754340 AGGGCATGGCATGGAGGCAGCGCCATCAGAGG---AAGATCTCTTGGATTCCAAGCGCAC 754284
Query 27400 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGA 27459
| |||||| | ||||| || |||||| | ||||| ||| | |||| || ||
Sbjct 754283 ATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGTAGTTGG 754224
Query 27460 TCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTC 27519
|| || || || || || ||| ||| || |||| ||||| || |||||||||
Sbjct 754223 TCAACTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTC 754164
Query 27520 CATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTG 27579
|| ||||| || || || || |||| ||| || ||||| ||| ||| ||| |
Sbjct 754163 CACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTA 754104
Query 27580 TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT 27639
|||| |||||||| ||| || ||||| |||||||| || || ||||| || ||||||
Sbjct 754103 TCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCT 754044
Query 27640 TTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 27699
|| | ||| ||| || ||| || ||||||| |||||||| || ||||||| ||
Sbjct 754043 TTAG-CTTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAAC 753985
Query 27700 AC-CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACC 27758
|| | ||||| || || || ||||| | | | |||| ||| | ||||| ||
Sbjct 753984 ACAACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCC 753925
Query 27759 AAACACGGACAAGACTCCCGTGCCCGT 27785
||||| |||| | || ||||| ||
Sbjct 753924 GAACACCGACAGGGTCCCGGTGCCGGT 753898
>seq13
Length=13416947
Score = 125 bits (138), Expect = 5e-24
Identities = 126/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
|| || |||| ||| || |||||||||||||| || | ||||||||| ||||| || ||
Sbjct 11482516 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 11482457
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
|| || || |||||||| || || |||||||| ||||| || || ||||| || |
Sbjct 11482456 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 11482397
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
||||| ||||| || | ||| ||||| ||||| || ||||| ||
Sbjct 11482396 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 11482353
Score = 105 bits (116), Expect = 5e-18
Identities = 128/173 (74%), Gaps = 1/173 (1%)
Strand=Plus/Minus
Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548
||| || |||| ||||| || ||||||||||| ||||| || || || || |||| |||
Sbjct 11478307 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 11478248
Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608
|| ||||| ||| ||| ||| | |||| |||||||| ||| || ||||| ||
Sbjct 11478247 CCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATC 11478188
Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 27661
|||||| || || ||||| || |||||||| | |||||||| || ||||
Sbjct 11478187 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 11478136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369474973891436
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |