Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq599 307 8e-79 seq13 125 5e-24 >seq599 Length=1005688 Score = 307 bits (340), Expect = 8e-79 Identities = 486/687 (71%), Gaps = 11/687 (2%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| |||||| || | || |||||| | ||||| || | | ||||| ||||| Sbjct 754578 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGT 754520 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | || || ||||||| || || ||||| || || || | || || |||| ||| | Sbjct 754519 AAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCG 754460 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||| ||||||||| | | |||||||||| |||| || || || || || ||||||| Sbjct 754459 CGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGT 754400 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCAT-CGCTTACGTAAAACTGACAT 27342 | || || ||||||| ||||| || || ||||| |||| | | | |||| ||||| || Sbjct 754399 CTCCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCT-CGTAGAACTGGCAG 754341 Query 27343 ATGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCAC 27399 | ||| ||||| ||||| || ||||| |||| ||| ||| | || ||||| |||||| Sbjct 754340 AGGGCATGGCATGGAGGCAGCGCCATCAGAGG---AAGATCTCTTGGATTCCAAGCGCAC 754284 Query 27400 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGA 27459 | |||||| | ||||| || |||||| | ||||| ||| | |||| || || Sbjct 754283 ATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGTAGTTGG 754224 Query 27460 TCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTC 27519 || || || || || || ||| ||| || |||| ||||| || ||||||||| Sbjct 754223 TCAACTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTC 754164 Query 27520 CATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTG 27579 || ||||| || || || || |||| ||| || ||||| ||| ||| ||| | Sbjct 754163 CACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTA 754104 Query 27580 TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT 27639 |||| |||||||| ||| || ||||| |||||||| || || ||||| || |||||| Sbjct 754103 TCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCT 754044 Query 27640 TTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 27699 || | ||| ||| || ||| || ||||||| |||||||| || ||||||| || Sbjct 754043 TTAG-CTTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAAC 753985 Query 27700 AC-CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACC 27758 || | ||||| || || || ||||| | | | |||| ||| | ||||| || Sbjct 753984 ACAACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCC 753925 Query 27759 AAACACGGACAAGACTCCCGTGCCCGT 27785 ||||| |||| | || ||||| || Sbjct 753924 GAACACCGACAGGGTCCCGGTGCCGGT 753898 >seq13 Length=13416947 Score = 125 bits (138), Expect = 5e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||||||||| || | ||||||||| ||||| || || Sbjct 11482516 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 11482457 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || || |||||||| ||||| || || ||||| || | Sbjct 11482456 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 11482397 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||| ||||| ||||| || ||||| || Sbjct 11482396 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 11482353 Score = 105 bits (116), Expect = 5e-18 Identities = 128/173 (74%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| ||||| || ||||||||||| ||||| || || || || |||| ||| Sbjct 11478307 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 11478248 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || ||||| ||| ||| ||| | |||| |||||||| ||| || ||||| || Sbjct 11478247 CCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATC 11478188 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 27661 |||||| || || ||||| || |||||||| | |||||||| || |||| Sbjct 11478187 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 11478136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369474973891436