Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq526 392 4e-104 seq630 320 2e-82 seq28 280 2e-70 seq867 154 2e-32 seq2 129 8e-25 seq80 109 8e-19 seq494 93.3 6e-14 seq29 91.5 2e-13 >seq526 Length=1402496 Score = 392 bits (434), Expect = 4e-104 Identities = 655/941 (70%), Gaps = 13/941 (1%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| || ||| || | || | |||| ||| ||| | || ||||| ||||| Sbjct 113327 GTTCATTTAGAAATCAGCACCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCC 113386 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| || || || | ||||| || || ||||| || ||||||| ||| || Sbjct 113387 CATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAAT 113446 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTAT--AAAtttttttAAATCCTAATTCT 47963 ||| |||||||| ||||||||||| || ||| | ||| || |||| || | ||| Sbjct 113447 ATTCTCCATAAAGTCAAATGGATTCTCT--ATTCTGAAAACCTTGCTAAAACCCAGTTCC 113504 Query 47964 GAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCT 48023 || |||| ||||| || || || || ||| ||||| | |||||||| || Sbjct 113505 AGCAT--GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCA 113562 Query 48024 ATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACT 48083 || || | || || | ||||| ||||||||||||||||| || ||||||| | Sbjct 113563 ATGAGCTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCATTGATA 113622 Query 48084 ATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACAT 48143 |||| | |||| | ||||| |||| | | | ||||| ||||| | || Sbjct 113623 GTTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAA 113682 Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203 ||||||| | || | ||| |||||||| |||| | || | |||||||||||| || Sbjct 113683 GCAAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCA 113742 Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATG 48263 ||||| ||||| | ||| |||||||| ||||| | || ||||| ||||||||| | ||| Sbjct 113743 GGCATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATG 113802 Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATC 48320 ||||| || || ||||| || || | || || || | || || |||| ||| Sbjct 113803 CCTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATC 113862 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 48380 || || |||||||| |||||||| || ||||||||||| ||||| || ||||| ||| Sbjct 113863 CAGCGCAAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAG 113922 Query 48381 AGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCG 48440 ||||| | |||||||| |||||| | |||||| || || | |||| ||||||||| Sbjct 113923 AGAAATTCCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCA 113982 Query 48441 GAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGT 48500 || || || ||||| || || || || || || || ||||| | ||||||| ||||| Sbjct 113983 GAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATCTGA 114042 Query 48501 ACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAA 48560 | || | |||||| || |||| || ||||||||||| |||||||| || |||| Sbjct 114043 AGTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGG 114102 Query 48561 AATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTG 48620 || || | || || ||||| ||| | || | | |||| | ||||| Sbjct 114103 AAAGCCAGAACGTGAGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCCGT 114162 Query 48621 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATAC 48680 || || || || | ||||| || ||||| |||| || || || || || || |||| | Sbjct 114163 ATGTCCTTGGACAGGTCTACCTCCTCAGCGCTCCAGAAGGAGGCGTCCGCCTTCTTATGC 114222 Query 48681 ATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || | ||| || | ||| | ||| |||||||| ||||| Sbjct 114223 ATCTGCCAGATGTTGTGGTACTCGATGGGGAAAATGACAAA 114263 >seq630 Length=879232 Score = 320 bits (354), Expect = 2e-82 Identities = 540/780 (69%), Gaps = 14/780 (2%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| |||||| |||| || |||| ||| ||| || |||| ||||| Sbjct 417473 GTTCATTTAGAAGTCAGCATCCAAGATAAAAGAATTCTCTGTGGGACTTGACACCACTCC 417532 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | | || ||||| || | ||||| || || ||| | || ||||||| || || Sbjct 417533 CATCCTCTAATGCTCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAAT 417592 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965 ||| |||||||| ||||||||||| || | | ||| || |||| || | ||| Sbjct 417593 ATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAG 417652 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025 || ||||| ||||| || || || || ||| ||||| | |||||||| || || Sbjct 417653 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 417712 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085 || || || || | ||| || || ||||| ||||| || ||||||| | || Sbjct 417713 GAGCTTCACAGGCAAGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAAT 417772 Query 48086 TATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 ||| | || | ||| |||| | | | |||| ||||| | || || Sbjct 417773 TATTTCTCTTTCTCCCGGCTCTGATGGTTTGTGTACTAGGTGTTGGAACATCAGGCAAGC 417832 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||||||||| || | ||| |||||||| |||| | ||| |||||||||||||| || || Sbjct 417833 AAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGG 417892 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 ||| ||||| ||||| || ||||| ||||| | || ||||| ||||||||||| | ||| Sbjct 417893 CATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCC 417952 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCA 48322 ||| || || ||||| || || || || || | || || |||| ||||| Sbjct 417953 TTCCACTGCAGCAAAGGCAGT-------TCACCATAGGTAGCCTCTTTGTCCCCAATCCA 418005 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 || |||| || ||||||||||| ||||||||||| ||||| || ||||| ||||| Sbjct 418006 GCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAG 418065 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 ||| | |||| || |||||| | || || || | | |||||||||||||| || Sbjct 418066 AAATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACTATACATTTCAGA 418125 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 || || || || || | || || ||||| || ||||| | || ||||| ||||| || Sbjct 418126 ATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAAC 418185 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || | |||||| || |||| || ||||||||||| || ||||| || ||||| || Sbjct 418186 TTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGAA 418245 >seq28 Length=17023488 Score = 280 bits (310), Expect = 2e-70 Identities = 671/1002 (67%), Gaps = 36/1002 (4%) Strand=Plus/Minus Query 78001 TAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAT 78060 ||| || |||||| |||||| | | ||||| ||||||| || |||||| || | | Sbjct 16623683 TAAGTCATTTCATGAAGAGAGCTGCAATCCAAAGAGCAAAAA---GATCTCTGGCACGCT 16623627 Query 78061 GTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 ||||||| ||| || ||||||| || | ||| | || || | || || ||||||| | Sbjct 16623626 GTTCTTCCTTTTCTATATTCTTCTTTAAATCAAAGAATTCAAAGATGTCTAAATGCCAAG 16623567 Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCT-GATCTATATATCTG 78179 | || || || || || | ||||||| | || || ||| ||| |||| | ||||| Sbjct 16623566 GCTCCAGGTAAATAGCAAATGCTCCAGGACACTTGTT-CCTACCTCGATCCAGATATCAA 16623508 Query 78180 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCA 78239 || ||||| ||||| ||||||| ||| | | || || || || | ||||| || || Sbjct 16623507 GCTGTGTTGTTATATACTCTCAGCATCAGTACAAGGCCATTGGAATTGCCATTCGTCTCA 16623448 Query 78240 GAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATC 78299 | ||| || || ||| | || | |||| ||| | | | || |||||||| | Sbjct 16623447 GCAATGTAGCTGCCAGTAGCCCAAATACAACTCACAGCAACACCAATTCCTCCACCAGAT 16623388 Query 78300 TTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATC 78359 ||||| || | || | | || | || || || || || || || ||||||| || Sbjct 16623387 TTAGAAATCAATGCATATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCATATTTC 16623328 Query 78360 ATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT----CCTGCATTAAATAA 78415 || | ||||||||||||||||| | ||| || ||||| || || | || | Sbjct 16623327 ATACTCAGAAGAAAACAGCTAGAAAGTTG----TGGGCAGTTGGTACCAACACTGAAGAG 16623272 Query 78416 TGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGT---ATGTTTCAATAGC 78472 || || || ||||| |||||| | | |||| ||| ||||||| ||||||||| || Sbjct 16623271 AGTTGGTGAAGCATGAGTAAACTACCTCTCAGGAAGAAGATTGTCTGCTGTTTCAATTGC 16623212 Query 78473 TGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCT 78532 | || ||||| || || ||||| || | | | | ||||||||||||| | ||| | Sbjct 16623211 TACATCAATGTCTTCTTTGTGGATTCCAACAGATGCTCTCATCAACATATGCCGTGGTAT 16623152 Query 78533 TTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAA 78592 |||| || || ||| ||||||||||| || || || | ||||||||||| Sbjct 16623151 TTCAGCCACTTTTCCATTGATTTTCAACAAATAAGACCACTCTAGCAACTTAAAACCAAA 16623092 Query 78593 ATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTT 78652 || ||||| || || ||| || | |||| | ||||||| | | ||||| |||| Sbjct 16623091 GTAATTGTAAGAGAAATCTTGGTCACAGATAACAGCAGAATTCAAGTGATCTT--TATTG 16623034 Query 78653 G--GTAACAATATCCATGACAGTAGTTGAAATAATAGGAGATCGTACACCATTTTTAGGA 78710 | ||||||||||| | | | | | || ||||| | |||| | ||| Sbjct 16623033 GCCAAAACAATATCCAGTGCTGACTTGGCCACCATGGGAGAGTATTTGTCATTATGTGGA 16622974 Query 78711 TTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGT 78770 | | ||||| | | |||||||| |||||||| || | || |||||||| ||||| Sbjct 16622973 CTTATGCAGTTATACAGGTCTTCCATCACATCACTGAACACTTCATTTGTTTCTTTGTGC 16622914 Query 78771 AGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAA 78830 | ||||| ||||| | || || || || |||||||| || | || | ||||| ||| Sbjct 16622913 AAGTTAGAGACAGCAGTCCTAGCTGCCAGGATAGCATAGACAAGGTGCTTAGTAGT-CAA 16622855 Query 78831 GTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGT 78890 || || || || ||| |||||| || || | ||||||||| | || | Sbjct 16622854 --GGTTG-TA--------GCCAAAGTATCTAGTTCCATCATAGTGACCCCACTGTACAAG 16622806 Query 78891 CCTTGAATAACTTTCATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAA 78950 | ||| || |||||||||| ||| | | ||||| |||| || | | | ||||||| Sbjct 16622805 CATTGGATTACTTTCATGGTGATCTGAGCGGGATCAACAA--TCCATAATAAGTCCATAA 16622748 Query 78951 CATAATTTTCT-AATACGAGATGTGATTTTATCAAATATAAC 78991 || || |||| | | |||| | ||||| |||||||| || Sbjct 16622747 CA-AAGCTTCTGTGTTCAAGATTTAATTTTGTCAAATATGAC 16622707 >seq867 Length=266704 Score = 154 bits (170), Expect = 2e-32 Identities = 262/378 (69%), Gaps = 4/378 (1%) Strand=Plus/Minus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| |||||| |||| || | ||||| ||| ||| | || ||||| ||||| Sbjct 180936 GTTCATTTAGAAGTCAGCATCCAAGGTAAAATAATTCTCTGTTGGACTTGACATCACTCC 180877 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| ||||| || | || || || || ||||| || ||||||| ||| || Sbjct 180876 CATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAAT 180817 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965 ||| |||||||| ||||||||||| || | | ||| || |||| || |||| Sbjct 180816 ATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCGATTCCAG 180757 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025 || ||||||||||| || || || || ||| ||||| | ||||||||||| || Sbjct 180756 CATAAGTCTATCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATTCCGAT 180697 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085 || || || || ||||| || || ||||| ||||| || ||||||| | || Sbjct 180696 GAGCTTCACAGGCGAGGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAAT 180637 Query 48086 TATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 ||| | |||| | ||||| |||| | | | |||||| |||| | || | Sbjct 180636 TATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGATGTTTGAACAACAGGCAAAC 180577 Query 48146 AAAATCACAATGAAGACC 48163 ||||||||| || | ||| Sbjct 180576 AAAATCACAGTGTAAACC 180559 >seq2 Length=18007423 Score = 129 bits (142), Expect = 8e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| |||||||||||||| || ||||| ||||| ||||| ||| Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| ||||||||||| ||||||||||| || ||||| || Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGC 1941369 Score = 102 bits (112), Expect = 1e-16 Identities = 110/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| |||||| |||| || | |||| ||| ||| | || ||||| ||||| Sbjct 1943299 GTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCC 1943240 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| || || || | ||||| || || ||||| || ||||||| ||| || Sbjct 1943239 CATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAAT 1943180 Query 47906 ATTTTCCATAAAATCAAATGGATT 47929 ||| |||||||| ||||||||||| Sbjct 1943179 ATTCTCCATAAAGTCAAATGGATT 1943156 >seq80 Length=8459403 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | ||| Sbjct 1278104 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATAGAC 1278163 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| ||||| || ||||| || || | | |||||| Sbjct 1278164 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 1278223 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 1278224 TTTCTTATACCAT 1278236 Score = 107 bits (118), Expect = 3e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 || || | ||| |||||||| ||||| | || || ||| || ||||| || |||||||| Sbjct 1283215 GAGCCCTCATAGGTTTCATATGGTCCATGCTCCTT-AGCAAGGTCACAGCTGGCTTCCAA 1283273 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 |||||||||||||| ||||| || |||| |||||| | || ||||| ||| || Sbjct 1283274 GGCTCCGTAATAAATAGTTTCAAAGATCTGCTTATTCAATAGCTGGGCTTCTGCACTCTC 1283333 Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 ||| || || | || ||||| |||||||| | || || || ||||| ||||| || Sbjct 1283334 AAAAGGGTATCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGG 1283393 Query 77534 TCTATGTCTCTTATTGGA 77551 | ||| | ||||| || Sbjct 1283394 GCGATGACGTTTATTTGA 1283411 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || || || ||||| |||||||| | |||||||| ||||| Sbjct 1298277 GTACCAGCATTGAAGAGAGTGGGTGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTA 1298336 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| |||| || ||||| || || || || || | ||| | ||||||| Sbjct 1298337 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 1298396 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 1298397 ATATGCTGTGGTCTTTCAGCC 1298417 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| ||||||| ||| ||||||| || | ||| Sbjct 1289066 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAAAAAAGATCTCTGGCACGCTGT 1289125 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || || || | || || ||||||| || Sbjct 1289126 TCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGGAATTCAAAGATGTCTAAATGCCAAGGC 1289185 Query 78123 TCTAGATATATTGC 78136 || || || || || Sbjct 1289186 TCCAGGTAAATAGC 1289199 >seq494 Length=1524325 Score = 93.3 bits (102), Expect = 6e-14 Identities = 100/132 (76%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 47785 TTATGGTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAA 47841 ||| | || |||| |||||| |||| |||| |||| ||||||| || | ||||| | Sbjct 779243 TTAAGCTTGTTTAGAAGTCAGCATCCAAAGTAAAAGAATTATCTATTTTACTTGACATCA 779302 Query 47842 CTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATG 47901 || |||| |||||||||||||| || | ||||| || || ||| | || ||||||| || Sbjct 779303 CTGCCATCTTTTGATATTCACCTACTCTCTTCTCAAAGAACTTAATCTTTCCTTCCAGTG 779362 Query 47902 ATATATTTTCCA 47913 | || || |||| Sbjct 779363 AAATGTTCTCCA 779374 >seq29 Length=11376298 Score = 91.5 bits (100), Expect = 2e-13 Identities = 241/361 (67%), Gaps = 19/361 (5%) Strand=Plus/Minus Query 45877 CCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCT 45934 |||||||| ||||| | | ||| | | |||| || |||| | || ||| ||||| | Sbjct 50145 CCAGTGGAACCAAAACTTCCTGAAC--CCCTTTTGGTGTCATCCAAAGCTTGAACTTCTT 50088 Query 45935 TCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTA 45994 | || || ||| | || | || | | | || || || |||| |||||| | || Sbjct 50087 CTATTTCTGGGTAAAAAATCCATTCACAAACGAGCTGTGCAATTCGATCACCTTTTTTGG 50028 Query 45995 TTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTT 46054 |||||| | ||||| ||| ||| | ||| | || ||| | ||||||||||||| Sbjct 50027 CTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAGCATTTCCTCTATAATCTT 49968 Query 46055 CATCTATTACTCCCCCTCCCACATCGATA---CCTTTTAGAGACAGTCCAGATCTAGGAG 46111 ||||||| || || ||| ||||| ||| |||| || || ||||| | |||| Sbjct 49967 CATCTATGACACCAGATCCTACATCAATAAAGTGTTTTGCAGCCAAGCCAGACCATGGAG 49908 Query 46112 CTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAAT 46167 ||| ||||| ||| ||||| || | | ||| | ||||||||||| | ||| Sbjct 49907 CTACTCTTCAGTAACACCCAGAA----GGAAGCGCTATCTGTATATCTGTTTTCA-CAA- 49854 Query 46168 CTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCTG 46225 |||||||| ||| || || | || || || |||||||| | || || ||||| | Sbjct 49853 GAGCTTTCTCCATAGGTGGTATTCTGTAATCATAGGCACTGTACAGGTCGTAGCCTGCGG 49794 Query 46226 C 46226 | Sbjct 49793 C 49793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694606661875840