Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq526 378 1e-99 seq630 298 8e-76 seq28 246 4e-60 seq867 147 3e-30 seq2 125 1e-23 seq57 111 2e-19 seq80 109 8e-19 seq29 89.7 7e-13 seq494 87.8 3e-12 >seq526 Length=1402496 Score = 378 bits (418), Expect = 1e-99 Identities = 624/895 (70%), Gaps = 13/895 (1%) Strand=Plus/Plus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| |||||||| | || || || ||||| | ||||| || || ||||| || || Sbjct 113375 TGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCC 113434 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442 ||||| ||| ||||| |||||||| ||||| ||||| | | ||| || |||| Sbjct 113435 TTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTATTCTGAAAACCTTGCTAAA 113494 Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCA-- 46500 || | ||| || |||| ||||| || || || || || || | ||||| | Sbjct 113495 ACCCAGTTCCAGCAT--GTCTGTCTGCCACAAACTCAATGTA---TTGCTTCATTAGAGT 113549 Query 46501 -CAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGT 46559 |||||||| || ||||| | || || | ||||| ||||||||||||||||| || Sbjct 113550 GCAATTCATCCCAATGAGCTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCG 113609 Query 46560 GACAGCATCCGATA-TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTT 46618 ||||||| |||| |||| | ||||| | ||||| |||| || | | |||| Sbjct 113610 AACAGCATT-GATAGTTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTT 113668 Query 46619 TAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAG 46678 | ||||| | || ||||||| | || | || |||||||| |||| | || | || Sbjct 113669 TGAACATCAGGCAAGCAAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAG 113728 Query 46679 AAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATC 46738 |||||||||| |||||||| ||||| | || |||||||| ||||| | || ||||| | Sbjct 113729 AAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAAC 113788 Query 46739 CAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCAT 46798 |||||||| | |||||||| || || || || || |||| | || || || | || | Sbjct 113789 CAGAAAAGTAGATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCT 113848 Query 46799 CATTATG---AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTT 46855 | || | |||||| | |||||||| ||||| || || ||||||||||| |||| Sbjct 113849 CTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTT 113908 Query 46856 CTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAA 46915 | || ||||| |||||||| | |||||| |||||| | || || || || | | Sbjct 113909 CAATGGCATTGAAGAGAAATTCCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGA 113968 Query 46916 GACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTG 46975 ||| ||||||||| ||||| |||||||| || || || || || || || ||||| | Sbjct 113969 GACCATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGC 114028 Query 46976 CTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCAT 47035 |||| |||||||| | ||| | |||||| || ||| || ||||| ||||| |||| Sbjct 114029 CTTCTGTAATCTGAAGTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCAT 114088 Query 47036 CACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTT 47095 |||| || |||| || |||| || || ||||| ||| | || || | |||| Sbjct 114089 CACTTGCTGCAAGGAAAGCCAGAACGTGAGATATAAAGTATCTCTCCTCAGGCTTCAGGG 114148 Query 47096 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155 | ||||| || || || || | ||||| || ||||| ||||||| || || | Sbjct 114149 ATTCCCAGTGCCGTATGTCCTTGGACAGGTCTACCTCCTCAGCGCTCCAGAAGGAGGCGT 114208 Query 47156 CTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 | || || |||| ||| | ||| || | | || | ||| || ||||| ||||| Sbjct 114209 CCGCCTTCTTATGCATCTGCCAGATGTTGTGGTACTCGATGGGGAAAATGACAAA 114263 >seq630 Length=879232 Score = 298 bits (330), Expect = 8e-76 Identities = 581/851 (68%), Gaps = 19/851 (2%) Strand=Plus/Plus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 ||||| |||||||| | | | |||||||| | ||||| || || ||| | || || Sbjct 417521 TGACACCACTCCCATCCTCTAATGCTCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCC 417580 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442 ||||| || ||||| |||||||| ||||| ||||| || | ||| || |||| Sbjct 417581 TTCCAGTGGAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAA 417640 Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCA-- 46500 || | ||| || ||||| ||||| || || || || || || | ||||| | Sbjct 417641 ACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTA---TTGCTTCATTAGAGT 417697 Query 46501 -CAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGT 46559 |||||||| || ||||| || || || | ||| || || ||||| ||||| || Sbjct 417698 GCAATTCATCCCAATGAGCTTCACAGGCAAGATCTCAGTGAGGAACTCCTGTTCTATCCG 417757 Query 46560 GACAGCATCCGATA-TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTT 46618 ||||||| |||| |||| | || || ||| |||| || | | |||| Sbjct 417758 AACAGCATT-GATAATTATTTCTCTTTCTCCCGGCTCTGATGGTTTGTGTACTAGGTGTT 417816 Query 46619 TAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAG 46678 ||||| | || ||||||||||| || | || |||||||| |||| | ||| |||| Sbjct 417817 GGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAG 417876 Query 46679 AAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATC 46738 |||||||||| |||||||| ||||| || || || ||||| ||||| | || ||||| | Sbjct 417877 AAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAAC 417936 Query 46739 CAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCAT 46798 |||||||||| | |||||| || || || || || ||| || || || | || | Sbjct 417937 CAGAAAAGAAGACGCCTTCCACTGCAGCAAAGGC----AGT---TCACCATAGGTAGCCT 417989 Query 46799 CATTATG---AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTT 46855 | || | |||||| | |||| || ||||| ||||| ||||||||||| |||| Sbjct 417990 CTTTGTCCCCAATCCAGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTT 418049 Query 46856 CTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAA 46915 | || ||||| |||||||| | |||| |||||| | ||| || || | | | Sbjct 418050 CAATGGCATTGAAGAGAAATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGA 418109 Query 46916 GACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTG 46975 ||||||||||||| ||||| ||||| || || | || || ||||| || ||||| | | Sbjct 418110 GACTATACATTTCAGAATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGG 418169 Query 46976 CTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCAT 47035 | || |||||||| || ||| | |||||| || ||| || ||||| ||||| || | Sbjct 418170 CCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGT 418229 Query 47036 CACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTT 47095 |||| || ||||| || || || || ||||| | | | || |||| |||| Sbjct 418230 CACTTGCTGCAAAGAAACTCAGAACGTGGGATATAAAGTGTCTCTCCTCGGGCTTCAGGG 418289 Query 47096 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155 | ||||| || || || || || || ||||| || ||||| || || |||| Sbjct 418290 ATTCCCAGTGCCGAATGTCCTTGGACGGGTCCACCTCTTCGGCGGTCCAAAAGGAGGCCT 418349 Query 47156 CTG-CTTTTTT 47165 | | ||| ||| Sbjct 418350 CCGTCTTGTTT 418360 >seq28 Length=17023488 Score = 246 bits (272), Expect = 4e-60 Identities = 659/998 (66%), Gaps = 42/998 (4%) Strand=Plus/Minus Query 76603 TTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 |||||| |||||| | | ||||| ||||||| || |||||| || | ||||||| Sbjct 16623676 TTTCATGAAGAGAGCTGCAATCCAAAGAGCAAAAA---GATCTCTGGCACGCTGTTCTTC 16623620 Query 76663 ATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAG 76722 ||| || ||||||| || | ||| | ||| || | || || ||||||| || || || Sbjct 16623619 CTTTTCTATATTCTTCTTTAAATCAAAGAATTCAAAGATGTCTAAATGCCAAGGCTCCAG 16623560 Query 76723 ATATATCGCCATAACACCCGGTCGTTTATTACCTCCCT-GATCTATATATCTGGCAGTGT 76781 || || || | | || || | || || ||| ||| |||| | ||||| || |||| Sbjct 16623559 GTAAATAGCAAATGCTCCAGGACACTTGTT-CCTACCTCGATCCAGATATCAAGCTGTGT 16623501 Query 76782 TATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATAT 76841 | ||||| ||||||| ||| | | || ||| || || | ||||| || ||| ||| | Sbjct 16623500 TGTTATATACTCTCAGCATCAGTACAAGGCCATTGGAATTGCCATTCGTCTCAGCAATGT 16623441 Query 76842 AACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGA 76901 | || ||| || | |||| ||| | || | || |||||||| | |||||| | Sbjct 16623440 AGCTGCCAGTAGCCCAAATACAACTCACAGCAACACCAATTCCTCCACCAGATTTAGAAA 16623381 Query 76902 TTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAA 76961 | | ||| | | || | |||||||| ||||| || || || |||| |||| | | Sbjct 16623380 TCAATGCATATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCATATTTCATACTCA 16623321 Query 76962 GAAGAAAACAGCTAGACATTTGATGATGAACAGTT----CCTGCATTAAACAATGTAGGA 77017 |||||||||||||||| | ||| || ||||| || || | || | || || Sbjct 16623320 GAAGAAAACAGCTAGAAAGTTG----TGGGCAGTTGGTACCAACACTGAAGAGAGTTGGT 16623265 Query 77018 GATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGT---ATGTTTCAATAACTGCTTCT 77074 || |||||||| ||| | | |||| ||| ||||||| ||||||||| || | || Sbjct 16623264 GAAGCATGAGTAAACTACCTCTCAGGAAGAAGATTGTCTGCTGTTTCAATTGCTACATCA 16623205 Query 77075 ATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134 || || || || ||||| |||| | | ||||||||||||| | ||| ||| | Sbjct 16623204 ATGTCTTCTTTGTGGATTCCAACAGATGCTCTCATCAACATATGCCGTGGTATTTCAGCC 16623145 Query 77135 GTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 77194 || ||| ||||||||||| || || || | ||||||||||| || ||| Sbjct 16623144 ACTTTTCCATTGATTTTCAACAAATAAGACCACTCTAGCAACTTAAAACCAAAGTAATTG 16623085 Query 77195 TATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGG---TA 77251 || || || ||| || | |||| | | ||||| | | || ||| |||| | Sbjct 16623084 TAAGAGAAATCTTGGTCACAGATAACAGCAGAATTCAAGTGATCTTTA---TTGGCCAAA 16623028 Query 77252 ACAATATCCATGACAGTGGTAGAAATAATTGGAGATCGTATT--CCATTTTTAGGATTAA 77309 |||||||||| | | | | | || ||||| ||||| |||| | ||| | | Sbjct 16623027 ACAATATCCAGTGCTGACTTGGCCACCATGGGAGA--GTATTTGTCATTATGTGGACTTA 16622970 Query 77310 CATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGAT 77369 ||||| | | ||||||||| || || || || | || |||||||| ||||| | | Sbjct 16622969 TGCAGTTATACAGGTCTTCCATCACATCACTGAACACTTCATTTGTTTCTTTGTGCAAGT 16622910 Query 77370 TCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGG 77429 | || || || | ||||| || || || |||||| || | || | ||||| |||| Sbjct 16622909 TAGAGACAGCAGTCCTAGCTGCCAGGATAGCATAGACAAGGTGCTTAGTAGTCAAGGT-- 16622852 Query 77430 CTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTT 77489 || || |||||||||| ||| || |||| || || | || | | || Sbjct 16622851 ----------TGTAGCCAAAGTATCTAGTTCCATCATAGTGACCCCACTGTACAAGCATT 16622802 Query 77490 GAATAACTTTCATGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATA 77549 | || |||||||||| || | ||||| |||| || | | | |||||||| | Sbjct 16622801 GGATTACTTTCATGGTGATCTGAGCGGGATCAACAA--TCCATAATAAGTCCATAACA-A 16622745 Query 77550 ATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 77586 | |||| | | |||| | ||||| ||||| ||||| Sbjct 16622744 AGCTTCTGTGTTCAAGATTTAATTTTGTCAAATATGAC 16622707 >seq867 Length=266704 Score = 147 bits (162), Expect = 3e-30 Identities = 258/371 (70%), Gaps = 11/371 (3%) Strand=Plus/Minus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 46339 |||| ||||| |||| || | ||||| ||| ||| | | |||||| |||||||| Sbjct 180931 TTTAGAAGTCAGCATCCAAGGTAAAATAATTCTCTGTTGGACTTGACATCACTCCCATCC 180872 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | || || |||||||| | || || || || ||||| || ||||||| ||| ||||| | Sbjct 180871 TCTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 180812 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 ||||||| ||||| ||||| || | ||| || |||| || |||| || | Sbjct 180811 CCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCGATTCCAGCATAA 180752 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCA---CAATTCATTCCTATGA 46516 |||||||||| || || || || || || | ||||| | ||||||||||| |||| Sbjct 180751 GTCTATCTGCCACAAACTCAATGTA---TTGCTTCATTAGAGTGCAATTCATTCCGATGA 180695 Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGAT-ATT 46575 | || || || ||||| || || ||||| ||||| || ||||||| ||| ||| Sbjct 180694 GCTTCACAGGCGAGGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCAT-TGATAATT 180636 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 || | ||||| | ||||| |||| || | | |||||| |||| | || || Sbjct 180635 ATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGATGTTTGAACAACAGGCAAACA 180576 Query 46636 AAATCACAATG 46646 |||||||| || Sbjct 180575 AAATCACAGTG 180565 >seq2 Length=18007423 Score = 125 bits (138), Expect = 1e-23 Identities = 101/122 (83%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| |||||||||||||| |||||||| ||||| || || ||| Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| ||||||||||| || || || || Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCT 1941368 Query 46774 AC 46775 || Sbjct 1941367 AC 1941366 >seq57 Length=8566406 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| || ||||| || || | ||| | Sbjct 1418655 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCTGGCATAAGACCTCTCTTCT 1418714 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| | ||||||||||| ||||| | Sbjct 1418715 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 1418774 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 1418775 CCACCACTCTTTCCCC 1418790 >seq80 Length=8459403 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | ||| Sbjct 1278104 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATAGAC 1278163 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| || |||||||| ||||| || ||||| || || | | |||||| Sbjct 1278164 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 1278223 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 1278224 TTTCTTATACCAT 1278236 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || ||||| || || || || || || Sbjct 1304489 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTGGCTGCCAGGATA 1304548 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 |||||||||||||| | ||||| |||| || ||| |||| || || |||||||||| | Sbjct 1304549 GCATAGTCAGGATGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 1304608 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || || | || | ||||| || || ||||||| Sbjct 1304609 TCCACCGTGGTGACCCCACTGTACAAGCCTTGGATTACCTTCATGG 1304654 Score = 95.1 bits (104), Expect = 2e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC 75993 ||| |||||| | || || | ||| ||||| || | || | || | ||| || || Sbjct 1283199 TCCTTTGCTAACTGGAGAGCCCTCATAGGTTTCATATGGTCCATGCTCCTTAGCAAGGTC 1283258 Query 75994 GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTT 76052 || || || || || || ||||||||||| ||||| || |||| |||||| || | | | Sbjct 1283259 ACAGCTGGCTTCCAAGGCTCCGTAATAAATAGTTTCAAAGATCTGCTTATTCAATAGC-T 1283317 Query 76053 GCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAA 76112 | ||||| ||| |||||||| || | || ||||| |||||||| || || || | Sbjct 1283318 GGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAAGCATCTGCCAGACCTTGTA 1283377 Query 76113 CTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 | ||||| ||||| || | ||| | ||||| || Sbjct 1283378 CCCCAATTCCAATGGGGCGATGACGTTTATTTGA 1283411 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || || || |||||||| ||||| | |||||||| ||||| Sbjct 1298277 GTACCAGCATTGAAGAGAGTGGGTGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTA 1298336 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| |||| || || || || || || || |||| || | ||||||| Sbjct 1298337 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 1298396 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 1298397 ATATGCTGTGGTCTTTC 1298413 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| ||| Sbjct 1288611 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 1288670 Query 76580 CACTC 76584 || || Sbjct 1288671 CAGTC 1288675 >seq29 Length=11376298 Score = 89.7 bits (98), Expect = 7e-13 Identities = 222/332 (67%), Gaps = 15/332 (5%) Strand=Plus/Minus Query 44391 CTATTGGTACTATCTAGAGATTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAG 44450 || ||||| ||| | || ||| ||||| |||| || || ||| | || | || | | Sbjct 50118 CTTTTGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGGTAAAAAATCCATTCACAA 50059 Query 44451 ATTAGTTGAGCTATTCTATCACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATC 44510 | || || || |||| ||||||| | || || ||| | ||||| ||| ||| | | Sbjct 50058 ACGAGCTGTGCAATTCGATCACCTTTTTTGGCTTCAAACTTTTCTTTGCCAAAATTAAAC 49999 Query 44511 AAAATTACTCCAATGTTCCCCCTATAATCTTCATCTATTACTCCACCTCCCACATCAATA 44570 | | || ||| || || ||||||||||||||||| || ||| ||| ||||||||| Sbjct 49998 AGTACAACACCAGCATTTCCTCTATAATCTTCATCTATGACACCAGATCCTACATCAATA 49939 Query 44571 ---CCTTTTAGAGAAAGACCCGATCTAGGCGCTATTCTTCCATAA----CAGAATTTTGG 44623 |||| || | || || | || |||| ||||| ||| ||||| || Sbjct 49938 AAGTGTTTTGCAGCCAAGCCAGACCATGGAGCTACTCTTCAGTAACACCCAGAA----GG 49883 Query 44624 CATAGACATACGAATATCTGTTTTAATCAACCGTCTTTCTCC--AGGAGGGATAGTATAA 44681 | | || | ||||||||||| | ||| | |||||||| ||| || || | ||| Sbjct 49882 AAGCGCTATCTGTATATCTGTTTTCA-CAAGAG-CTTTCTCCATAGGTGGTATTCTGTAA 49825 Query 44682 TCGTAAGCACTGTATAAATCATATCCTGCCGC 44713 || || |||||||| | || || ||||| || Sbjct 49824 TCATAGGCACTGTACAGGTCGTAGCCTGCGGC 49793 >seq494 Length=1524325 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/132 (75%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 46274 TTATGATTCTTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAA 46330 ||| | || |||| ||||| |||| |||| |||| ||||||| || |||||| | Sbjct 779243 TTAAGCTTGTTTAGAAGTCAGCATCCAAAGTAAAAGAATTATCTATTTTACTTGACATCA 779302 Query 46331 CTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATG 46390 || |||| ||||| ||||||||||| | ||||| || || ||| | || ||||||| || Sbjct 779303 CTGCCATCTTTTGATATTCACCTACTCTCTTCTCAAAGAACTTAATCTTTCCTTCCAGTG 779362 Query 46391 ATATATTTTCCA 46402 | || || |||| Sbjct 779363 AAATGTTCTCCA 779374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712870628017920