Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq34 183 4e-41 seq310 111 2e-19 >seq34 Length=10557659 Score = 183 bits (202), Expect = 4e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| ||| |||||| ||||| || ||||| || ||||||||||| Sbjct 7335555 GTCTGGAACAACTGCTCATCATCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 7335614 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct 7335615 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 7335674 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || || || | |||| | || || |||| ||||| |||||||| | Sbjct 7335675 ACCTCCTGCCCCACCGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCT 7335734 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTGA 9486 |||| |||||||| | ||| |||||||| || || ||||| |||||| Sbjct 7335735 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCTGA 7335785 Score = 168 bits (186), Expect = 1e-36 Identities = 231/323 (72%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 8264 TTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTA 8323 |||| ||||| ||| ||||| | ||| | | || ||||| || || ||||| | Sbjct 7333804 TTGATCAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCTTTCACGTTATTG 7333863 Query 8324 CAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAG 8383 |||| ||||||||||| | || | |||| ||| ||| ||||| ||||| || || Sbjct 7333864 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTTGAAACCCACTTCTCCACCAAAA 7333923 Query 8384 GTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAG 8443 ||||| ||||||||||| | || || || ||||| || |||| || ||||| | |||| Sbjct 7333924 GTGCTTGGCTTCCAGTAGGCGGGAGAACATATGACATTACCCATAAGTCCTTTCAAGGAG 7333983 Query 8444 AACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8503 || || || || | || | || ||||||| |||||||| | ||||| |||||||| Sbjct 7333984 AATGGTGCTCCAACTTCTACCATAGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCT 7334043 Query 8504 ACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCG 8563 |||| | | | |||||||||| ||| |||| ||| || || || || | | || Sbjct 7334044 ACCAGAAGGGCAGGATACAGCTCCATAGCATCGATGTCACCATAGAGTGCTTTCAACTCT 7334103 Query 8564 GCAGCGATCTCCTTTTCTCCTGT 8586 ||||| || ||||| |||||||| Sbjct 7334104 GCAGCCATTTCCTTCTCTCCTGT 7334126 Score = 123 bits (136), Expect = 4e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 7336712 TCTTACCCCATGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 7336771 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| |||||||| || ||| |||| || |||||||| | || | |||||||||||| Sbjct 7336772 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCCTGGGGATC 7336831 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| | || | |||||| ||||||||||| Sbjct 7336832 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 7336869 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| || ||||| ||||| || | ||||||||| || || | Sbjct 7334964 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 7335023 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATA-CTTTGTTTTATCAATC 9060 | | || || |||||||||| || ||| | |||| || || || | || ||| Sbjct 7335024 AGTAACATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTAGCTCTGGTC-ATGAATT 7335080 Query 9061 TCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9120 | ||| | || |||| || | |||||||||||| | | |||||||| | | ||| Sbjct 7335081 TGAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATA 7335140 Query 9121 CGATTTTGGTACTGGAA 9137 ||||||||||||||||| Sbjct 7335141 CGATTTTGGTACTGGAA 7335157 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | |||||||| || || | ||| || ||||| || || | Sbjct 7337312 TCACCTTTCACACCCAGGGGAGTTGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTA 7337371 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 ||||||||||| || ||||| |||||||||||| ||| | ||||| | ||||| | Sbjct 7337372 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAGGTT 7337431 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || || |||||||||| | ||| |||| Sbjct 7337432 GGTGGACTCTCAATCAAATGTGCTCTGGCTGA 7337463 >seq310 Length=2722360 Score = 111 bits (122), Expect = 2e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||||||||| || |||| || ||||| || ||||| ||||||||||| |||| | Sbjct 2583814 TCTTGACGATGTTAAAGCCCATCTCGCCGCCAAATGTGCTCGGCTTCCAGTATTCCGGAG 2583755 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || | Sbjct 2583754 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 2583695 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||| | ||| ||| || |||||| | | | || | || | ||||| Sbjct 2583694 TCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAAGAAGCAGCCCAGGATAGAACTCCA 2583635 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || | |||||| || | || | || || || |||||||| |||||| Sbjct 2583634 ATGCATCAATGTCTCCATACAACTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCT 2583579 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || || |||||||| || ||||| || | ||| || || Sbjct 2575295 TCACCTATGAGGATGAGGCGGGTCGTCTGGAAGAGCTGCTCATCGCCCCAGGTGGGGTGC 2575236 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || |||||| | || ||||| | ||||| || | ||||||| ||||| |||| | Sbjct 2575235 TCAGCTTTCAGCAGGTCACACACACGATTGTGCTCGCGCAGCCAGAGCGTGGCATACAGC 2575176 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || || |||| Sbjct 2575175 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACGGCCA 2575133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716812675370240