Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq34 183 4e-41
seq310 111 2e-19
>seq34
Length=10557659
Score = 183 bits (202), Expect = 4e-41
Identities = 179/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| ||||| ||| |||||| ||||| || ||||| || |||||||||||
Sbjct 7335555 GTCTGGAACAACTGCTCATCATCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 7335614
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||||||||||| |||||||| ||||| |||||||| || ||||| ||||| |||||
Sbjct 7335615 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 7335674
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || || || | |||| | || || |||| ||||| |||||||| |
Sbjct 7335675 ACCTCCTGCCCCACCGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCT 7335734
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTGA 9486
|||| |||||||| | ||| |||||||| || || ||||| ||||||
Sbjct 7335735 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCTGA 7335785
Score = 168 bits (186), Expect = 1e-36
Identities = 231/323 (72%), Gaps = 0/323 (0%)
Strand=Plus/Plus
Query 8264 TTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTA 8323
|||| ||||| ||| ||||| | ||| | | || ||||| || || ||||| |
Sbjct 7333804 TTGATCAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCTTTCACGTTATTG 7333863
Query 8324 CAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAG 8383
|||| ||||||||||| | || | |||| ||| ||| ||||| ||||| || ||
Sbjct 7333864 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTTGAAACCCACTTCTCCACCAAAA 7333923
Query 8384 GTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAG 8443
||||| ||||||||||| | || || || ||||| || |||| || ||||| | ||||
Sbjct 7333924 GTGCTTGGCTTCCAGTAGGCGGGAGAACATATGACATTACCCATAAGTCCTTTCAAGGAG 7333983
Query 8444 AACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8503
|| || || || | || | || ||||||| |||||||| | ||||| ||||||||
Sbjct 7333984 AATGGTGCTCCAACTTCTACCATAGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCT 7334043
Query 8504 ACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCG 8563
|||| | | | |||||||||| ||| |||| ||| || || || || | | ||
Sbjct 7334044 ACCAGAAGGGCAGGATACAGCTCCATAGCATCGATGTCACCATAGAGTGCTTTCAACTCT 7334103
Query 8564 GCAGCGATCTCCTTTTCTCCTGT 8586
||||| || ||||| ||||||||
Sbjct 7334104 GCAGCCATTTCCTTCTCTCCTGT 7334126
Score = 123 bits (136), Expect = 4e-23
Identities = 122/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | ||
Sbjct 7336712 TCTTACCCCATGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 7336771
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| |||||||| || ||| |||| || |||||||| | || | ||||||||||||
Sbjct 7336772 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCCTGGGGATC 7336831
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806
|| |||| | || | |||||| |||||||||||
Sbjct 7336832 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 7336869
Score = 91.5 bits (100), Expect = 2e-13
Identities = 141/197 (72%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| | ||| || ||||| || ||||| ||||| || | ||||||||| || || |
Sbjct 7334964 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 7335023
Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATA-CTTTGTTTTATCAATC 9060
| | || || |||||||||| || ||| | |||| || || || | || |||
Sbjct 7335024 AGTAACATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTAGCTCTGGTC-ATGAATT 7335080
Query 9061 TCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9120
| ||| | || |||| || | |||||||||||| | | |||||||| | | |||
Sbjct 7335081 TGAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATA 7335140
Query 9121 CGATTTTGGTACTGGAA 9137
|||||||||||||||||
Sbjct 7335141 CGATTTTGGTACTGGAA 7335157
Score = 89.7 bits (98), Expect = 7e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | |||||||| || || | ||| || ||||| || || |
Sbjct 7337312 TCACCTTTCACACCCAGGGGAGTTGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTA 7337371
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
||||||||||| || ||||| |||||||||||| ||| | ||||| | ||||| |
Sbjct 7337372 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAGGTT 7337431
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| || || |||||||||| | ||| ||||
Sbjct 7337432 GGTGGACTCTCAATCAAATGTGCTCTGGCTGA 7337463
>seq310
Length=2722360
Score = 111 bits (122), Expect = 2e-19
Identities = 166/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
|||||||||| || |||| || ||||| || ||||| ||||||||||| |||| |
Sbjct 2583814 TCTTGACGATGTTAAAGCCCATCTCGCCGCCAAATGTGCTCGGCTTCCAGTATTCCGGAG 2583755
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
| |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || |
Sbjct 2583754 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 2583695
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| || ||||| | ||| ||| || |||||| | | | || | || | |||||
Sbjct 2583694 TCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAAGAAGCAGCCCAGGATAGAACTCCA 2583635
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584
|| || | |||||| || | || | || || || |||||||| ||||||
Sbjct 2583634 ATGCATCAATGTCTCCATACAACTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCT 2583579
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || || | |||||| || || |||||||| || ||||| || | ||| || ||
Sbjct 2575295 TCACCTATGAGGATGAGGCGGGTCGTCTGGAAGAGCTGCTCATCGCCCCAGGTGGGGTGC 2575236
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| |||||| | || ||||| | ||||| || | ||||||| ||||| |||| |
Sbjct 2575235 TCAGCTTTCAGCAGGTCACACACACGATTGTGCTCGCGCAGCCAGAGCGTGGCATACAGC 2575176
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
||||||||||| | ||| ||||| |||| || || || ||||
Sbjct 2575175 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACGGCCA 2575133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716812675370240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |