Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq503 91.5 1e-13 seq132 89.7 5e-13 seq69 89.7 5e-13 seq828 84.2 2e-11 seq404 84.2 2e-11 >seq503 Length=1449082 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||| || || ||||| |||| | || || Sbjct 1047244 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCAGCCATCTTCC 1047185 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || | ||| ||||| ||| | || ||||| ||| | Sbjct 1047184 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTC--GGGGGATGCCTTCCTTATCCTGG 1047127 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | ||||| || | ||||||||||| || || || || Sbjct 1047126 ATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAAGGTGATGGTCTTG 1047067 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| ||||| || | ||| || Sbjct 1047066 CCGGTCAGGGTCTTCACGAAGATATACATTTT 1047035 >seq132 Length=5349423 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||| ||||| || || ||||| | || || Sbjct 1755034 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 1754975 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| | || || || || | || ||||| ||||| | || ||||| ||| | Sbjct 1754974 AGCTGCTTTCGTGCAAAGATGAGCCTGTGGTGGTCGGCGGGGATGCCTTCCTTATCCTGG 1754915 Query 41774 ATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||||| | || | |||| || | ||||||||||| || || || || Sbjct 1754914 ATCTTGGCCTTCA-CATTTTCAGTGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 1754856 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || |||| ||||| | || |||||||| || Sbjct 1754855 GCCGATCAGGGTCTTCATGACGATCTGCATTTT 1754823 >seq69 Length=11786368 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||| | ||||||||| ||| ||||||||||| ||| || Sbjct 9226515 GCCACCTCGCAGGCGCAGCACTGGGTGCAGCGTGGACTCTTTCTGAATGTT---GTCTGA 9226459 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| |||| | || || ||||| ||||| || |||| ||| | ||| ||||| | || Sbjct 9226458 GAGAGTGCAGCCATCCTCTAGCTGTTTGCCTGCAAATAACAGACACTGCTGGTCAGGTGG 9226399 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA-CAGTGTCGCTCGACTCCA 41813 || |||||||| | ||| |||| || | || || | | ||| || | ||| | Sbjct 9226398 GGTGCCCTCCTTGT-CTTGAATTTTGGCATTGACATTCTCAGCGGGGTCCCTGGGCTCAA 9226340 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || ||||| || || || ||||| || || |||| ||| Sbjct 9226339 CCTCAGCGGTGATGGTTTTGCCTGTGAG-GTCTTCACAAAGATCTTCAT 9226292 >seq828 Length=339631 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| ||||| || || |||| Sbjct 9786 AGACGCAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCTG 9727 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| ||| | || ||| Sbjct 9726 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCACGGGGGATGCCTTCC 9667 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 | ||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 9666 TAATCCTGGATCTTGGTCTTCACATATTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 9607 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || || | || | ||||| ||||| | |||||| || Sbjct 9606 GTGGTCTTGCTGGTGGGGGTCTTCACGAAGACCTGCATTTT 9566 >seq404 Length=2013455 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/243 (68%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| |||| ||||| | ||||| ||||| || ||| ||||| ||||| ||||| Sbjct 951911 ACAGCCACCGCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTC 951970 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGC---GCTGTT---- 41744 ||| |||||| | || | || ||||||| || || || || | |||||| Sbjct 951971 --AGAAGGTGCGGCCATCTTTCAGTGGCTTGCCTGCAAAAATGAGCCTCTGCTGTTCGGG 952028 Query 41745 --GGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTC 41802 ||| | |||| ||| |||| ||| ||| || ||||| ||| ||||| Sbjct 952029 GGGGTGGGGGGGATGCCTC-CCTTATCCTGGATCTTGGCCTTCACATTTTACATGGTGTC 952087 Query 41803 GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||||||||||| || || || || || ||||| ||||| || || |||||||| Sbjct 952088 ACTAGGCTCCACCTCCAGGGTGATTGTCTTGCCGGTCAGGGTCTTCACAAACATCTGCAT 952147 Query 41863 GTT 41865 || Sbjct 952148 TTT 952150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462262646907200