Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq503 91.5 1e-13
seq132 89.7 5e-13
seq69 89.7 5e-13
seq828 84.2 2e-11
seq404 84.2 2e-11
>seq503
Length=1449082
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| || ||| ||||| ||||| || || ||||| |||| | || ||
Sbjct 1047244 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCAGCCATCTTCC 1047185
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| || || || || | ||| ||||| ||| | || ||||| ||| |
Sbjct 1047184 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTC--GGGGGATGCCTTCCTTATCCTGG 1047127
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||||| | ||||| || | ||||||||||| || || || ||
Sbjct 1047126 ATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAAGGTGATGGTCTTG 1047067
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| ||||| ||||| ||||| || | ||| ||
Sbjct 1047066 CCGGTCAGGGTCTTCACGAAGATATACATTTT 1047035
>seq132
Length=5349423
Score = 89.7 bits (98), Expect = 5e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| || ||| ||||| ||||| ||||| || || ||||| | || ||
Sbjct 1755034 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 1754975
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
|||||||| | || || || || | || ||||| ||||| | || ||||| ||| |
Sbjct 1754974 AGCTGCTTTCGTGCAAAGATGAGCCTGTGGTGGTCGGCGGGGATGCCTTCCTTATCCTGG 1754915
Query 41774 ATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
|| || ||||| | || | |||| || | ||||||||||| || || || ||
Sbjct 1754914 ATCTTGGCCTTCA-CATTTTCAGTGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 1754856
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| |||| ||||| | || |||||||| ||
Sbjct 1754855 GCCGATCAGGGTCTTCATGACGATCTGCATTTT 1754823
>seq69
Length=11786368
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/229 (70%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || | ||| | ||||||||| ||| ||||||||||| ||| ||
Sbjct 9226515 GCCACCTCGCAGGCGCAGCACTGGGTGCAGCGTGGACTCTTTCTGAATGTT---GTCTGA 9226459
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| |||| | || || ||||| ||||| || |||| ||| | ||| ||||| | ||
Sbjct 9226458 GAGAGTGCAGCCATCCTCTAGCTGTTTGCCTGCAAATAACAGACACTGCTGGTCAGGTGG 9226399
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA-CAGTGTCGCTCGACTCCA 41813
|| |||||||| | ||| |||| || | || || | | ||| || | ||| |
Sbjct 9226398 GGTGCCCTCCTTGT-CTTGAATTTTGGCATTGACATTCTCAGCGGGGTCCCTGGGCTCAA 9226340
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || ||||| || || || ||||| || || |||| |||
Sbjct 9226339 CCTCAGCGGTGATGGTTTTGCCTGTGAG-GTCTTCACAAAGATCTTCAT 9226292
>seq828
Length=339631
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/221 (68%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| ||||| || ||| ||||| ||||| ||||| || || ||||
Sbjct 9786 AGACGCAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCTG 9727
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || || || | ||| ||||| ||| | || |||
Sbjct 9726 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCACGGGGGATGCCTTCC 9667
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
| ||| ||| || ||||| | | ||||| || | ||||||||||| ||
Sbjct 9666 TAATCCTGGATCTTGGTCTTCACATATTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 9607
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
| || || | || | ||||| ||||| | |||||| ||
Sbjct 9606 GTGGTCTTGCTGGTGGGGGTCTTCACGAAGACCTGCATTTT 9566
>seq404
Length=2013455
Score = 84.2 bits (92), Expect = 2e-11
Identities = 166/243 (68%), Gaps = 12/243 (5%)
Strand=Plus/Plus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| |||| ||||| | ||||| ||||| || ||| ||||| ||||| |||||
Sbjct 951911 ACAGCCACCGCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTC 951970
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGC---GCTGTT---- 41744
||| |||||| | || | || ||||||| || || || || | ||||||
Sbjct 951971 --AGAAGGTGCGGCCATCTTTCAGTGGCTTGCCTGCAAAAATGAGCCTCTGCTGTTCGGG 952028
Query 41745 --GGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTC 41802
||| | |||| ||| |||| ||| ||| || ||||| ||| |||||
Sbjct 952029 GGGGTGGGGGGGATGCCTC-CCTTATCCTGGATCTTGGCCTTCACATTTTACATGGTGTC 952087
Query 41803 GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | ||||||||||| || || || || || ||||| ||||| || || ||||||||
Sbjct 952088 ACTAGGCTCCACCTCCAGGGTGATTGTCTTGCCGGTCAGGGTCTTCACAAACATCTGCAT 952147
Query 41863 GTT 41865
||
Sbjct 952148 TTT 952150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462262646907200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |