Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1989 179 4e-40 seq1678 102 8e-17 seq2631 89.7 5e-13 >seq1989 Length=5200062 Score = 179 bits (198), Expect = 4e-40 Identities = 577/886 (65%), Gaps = 26/886 (3%) Strand=Plus/Minus Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720 || || ||||| || || || || | || | || || || ||||| || || | Sbjct 4401872 ACCACTCCCATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC----- 4401818 Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACC 16778 || || ||||||||||| || ||||| || || || ||||||| || | | | Sbjct 4401817 AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAA--AAC 4401760 Query 16779 CCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGT 16838 ||||||| | || ||| || || ||| | || || ||||| ||||| ||| | Sbjct 4401759 CCAGTTCCGGCATG--TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAAT 4401702 Query 16839 TCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898 |||| || || || || || | || || || | ||| || ||||| ||| | Sbjct 4401701 TCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAG 4401642 Query 16899 CTTCCTTAATAATACTAGCA---ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAA 16955 | | | ||||| || | | || ||||| ||| | ||| || || || | Sbjct 4401641 CAT---TGATAATTCTTCCTCTTATTCTCTCCTCCAGTGGTTTGTGTGCCAGGTGATTGA 4401585 Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||||||| || || ||||| || ||||| ||||| |||| || |||||||| || |||| Sbjct 4401584 ACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAA 4401525 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || | || |||||| |||||||||||| | ||| ||||||| || || | |||| Sbjct 4401524 AGGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAG 4401465 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 ||||| || || || | | ||||| | | | ||||| | || || || ||| Sbjct 4401464 AAAAG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTT 4401408 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 ||| | |||||| | | |||| || || | ||| | ||| ||||||||| | Sbjct 4401407 TGTCCCCAATCCAGTGCAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAA 4401348 Query 17196 TGGCCTTAAA--TAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTA 17252 |||| || || || ||| | || || | || || |||| || || || || || | Sbjct 4401347 TGGCATTGAAGCGAAATTCCC---TTACTTTGGGATCTTTTATGTAAGTGTCAATAAGGA 4401291 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 || |||||| | || |||||||| |||||||| || || || || | || || |||| Sbjct 4401290 AACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGG 4401231 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 |||| | | |||||||| | |||| ||| | | ||| | || || ||||| | Sbjct 4401230 CTTCTGTCACCTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCAT 4401171 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 | || || | || || ||| | ||| || |||| | | || || || | || Sbjct 4401170 CACTTGCTACAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGG 4401111 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| | | || ||||| | ||||| || || | |||||| || ||| Sbjct 4401110 ATTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCCGCGGTCCAGAAGGAAGCTT 4401051 Query 17493 CTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | ||||| |||||||| | ||| ||||||| ||| | ||||||| Sbjct 4401050 CCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGGTGGGGAA 4401005 >seq1678 Length=10304083 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||||||||| || |||||||| | || |||||| ||||||||||| Sbjct 209199 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 209258 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || || | ||||| | Sbjct 209259 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 209318 Query 17106 C 17106 | Sbjct 209319 C 209319 >seq2631 Length=7319754 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || || || | || ||||| ||||| || ||||| |||||||| || ||||||| Sbjct 2079014 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATG 2078955 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||| ||||| | | ||| |||||| || || || ||||||| Sbjct 2078954 TGAGGCCAGGCATCAGTCCTTGTTTCCTGAGCCAGAATATCAGTGCAAAAGAACCAGAAA 2078895 Query 17079 AGAA 17082 |||| Sbjct 2078894 AGAA 2078891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517471636264440