Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1989 188 7e-43 seq10880 107 2e-18 seq1678 102 8e-17 >seq1989 Length=5200062 Score = 188 bits (208), Expect = 7e-43 Identities = 584/889 (66%), Gaps = 26/889 (3%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | || || |||||||| || |||| | Sbjct 4401869 ACTCCCATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT----- 4401815 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| ||||| || || || ||||||| ||| | |||| Sbjct 4401814 GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAAC--CTTGCTAAAACCCA 4401757 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078 |||||| | ||| ||||| ||| | || || ||||| ||||| ||| |||||| Sbjct 4401756 GTTCCGGCATG--TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGT-GCAATTC 4401700 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || || || || || | || | || | |||| ||||||||| ||| || Sbjct 4401699 ATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCA 4401640 Query 16139 TCTTTAATGATATCGGTGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACAT 16197 | |||| | | | || | | ||| ||| | || ||||| || ||||| Sbjct 4401639 TTGATAATTCTTCCTCTTATTCTCTCCTCCAGT-GGTTTGTGTGCCAGGTGATTGAACAT 4401581 Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 || || || || || || |||| || || |||| || |||||||| |||||||| || Sbjct 4401580 CAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGT 4401521 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 | || ||||| |||||||||||| | ||||||||||| ||||| | || ||||| Sbjct 4401520 GAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAA 4401461 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 | || || || | | ||||| | | | |||||| | || ||||| |||| | Sbjct 4401460 G---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTC 4401404 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | |||||| | | |||| || || | || | |||| ||||||||| ||||| Sbjct 4401403 CCCAATCCAGTGCAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAATGGC 4401344 Query 16438 CTTAAA--CAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || || || ||| | || | | ||| |||| || || ||||| || ||||| Sbjct 4401343 ATTGAAGCGAAATTCCC--TTACTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTA 4401286 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 |||||| | || |||||||| || ||||| || || || ||| |||| || || || || Sbjct 4401285 TACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCT 4401226 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 | | || ||||| | | |||| ||| ||| ||| |||| || || || |||||| Sbjct 4401225 GTCACCTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTT 4401166 Query 16616 GCAGCAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATAT 16673 || ||| ||||| || ||| | | || |||| | | || || | | || | Sbjct 4401165 GCTACAAAGAAAACCAGAACATGGGAT--ATAAAATCTCTCTCCTCGGGCTTCAGGGATT 4401108 Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTG 16733 ||| | | || ||||| | ||||| || || | ||||| ||| ||| | | Sbjct 4401107 CCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCCGCGGTCCAGAAGGAAGCTTCCG 4401048 Query 16734 CCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 |||| |||||||| | ||| ||||||| ||| | |||| || | ||| Sbjct 4401047 CCTTCTTATACATCTGCCAGATATCATGGTACTCGGTGGGGAAGATGAC 4400999 >seq10880 Length=11791330 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| |||| Sbjct 10272721 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 10272780 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| | Sbjct 10272781 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 10272840 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 10272841 CCACCACTCTTTCC 10272854 >seq1678 Length=10304083 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||||||||| |||||||| || | || ||||| |||||||||||| Sbjct 209201 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 209260 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 209261 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 209319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511341312489560