Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1989 293 3e-74 seq4087 188 8e-43 seq2631 154 2e-32 seq6459 120 4e-22 seq10880 116 4e-21 seq7011 104 3e-17 seq1678 104 3e-17 seq1330 91.5 2e-13 >seq1989 Length=5200062 Score = 293 bits (324), Expect = 3e-74 Identities = 637/944 (67%), Gaps = 36/944 (4%) Strand=Plus/Minus Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 23844 |||| |||||| |||| || | |||| ||| ||| | || |||| |||||||| Sbjct 4401919 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTCGACACCACTCCCATCC 4401860 Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 | || || || || | || || || || || || || | | ||| ||||| | Sbjct 4401859 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 4401805 Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCA 23964 |||| || || |||| || || | | | | |||| |||| ||| | || Sbjct 4401804 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG- 4401746 Query 23965 ATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 24024 ||| ||||| ||| |||| || ||| ||||| | |||||||| || || || | Sbjct 4401745 -TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 4401687 Query 24025 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 24084 | || || | ||| |||| || ||||| ||||| || || || | | ||||| Sbjct 4401686 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCAT---TGATAAT-- 4401632 Query 24085 ATCTTACTGTT--TCTTCACTCG-GTGGATACAAT---AAATGTTTAAACATCAAACATG 24138 |||| || || ||| ||| |||| | | | || || ||||||| || | Sbjct 4401631 -TCTTCCTCTTATTCTCTCCTCCAGTGGTTTGTGTGCCAGGTGATTGAACATCAGGCAAG 4401573 Query 24139 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 24198 | ||||| ||||||| |||||| |||| |||||| | ||| |||||||| ||||| || | Sbjct 4401572 CAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAG 4401513 Query 24199 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 24258 |||| || || || || || ||||| ||||| || ||||| | |||||||||| | | Sbjct 4401512 GCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGC 4401456 Query 24259 CTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCC 24315 |||| |||| |||||| | | || | ||| ||||| | | || |||| |||| Sbjct 4401455 CTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCC 4401396 Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 24375 | | |||||||| ||| ||| || ||||||||||| || || || ||||| ||| Sbjct 4401395 AGTGCAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGC 4401336 Query 24376 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 24435 || | | || | || |||||| | || || ||||| | | |||||||||| | | Sbjct 4401335 GAAATTCCCTTACTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAG 4401276 Query 24436 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 24495 |||| |||||||| ||||| ||||| || || ||||||| | || || || | ||| | Sbjct 4401275 AATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAA 4401216 Query 24496 CTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 24555 ||||| | | |||| || | || ||| |||| ||||| || ||||| ||| |||| | Sbjct 4401215 CTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGCTACAAAGA 4401156 Query 24556 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG- 24614 | ||| ||||| |||||||| | | || || || | || ||||| || || Sbjct 4401155 AAACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAG-GGATTCC---CAGTGC 4401100 Query 24615 ---ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 24671 || || || || | ||||| || ||| | ||||| || || || || ||||| ||| Sbjct 4401099 CAAATGTCCTTGGACAGGTCCACCTCCTCCGCGGTCCAGAAGGAAGCTTCCGCCTTCTTA 4401040 Query 24672 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 ||||| | |||||| ||||| || | | || || || ||||| Sbjct 4401039 TACATCTGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 4400996 >seq4087 Length=903614 Score = 188 bits (208), Expect = 8e-43 Identities = 275/387 (71%), Gaps = 5/387 (1%) Strand=Plus/Minus Query 24334 CCTTCTTTTTTACACA----AGGCATTGTCTC-TATAGCATTAAAGAGATAGtttttttC 24388 ||||||| || || || |||||| || || ||| | ||| | || | | |||| Sbjct 28131 CCTTCTTCTTGACCCAGCGAAGGCATCGTTTCATATGGGATTGAGAGGAAATTCCCTTTC 28072 Query 24389 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTC 24448 || |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| Sbjct 28071 TTTGGGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTC 28012 Query 24449 AATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAA 24508 ||||| ||||| || || |||||||| | || || |||||||| |||||| | ||| Sbjct 28011 CATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAA 27952 Query 24509 TCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 24568 ||| || | || |||||||| ||||| || || || |||||||| || |||| ||||| Sbjct 27951 TCGCTCCACCAAGTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATG 27892 Query 24569 TTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 24628 |||||||||| | || || || | || | ||| | | || || || || | Sbjct 27891 GAATATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCTGAATGTCCTTGGACAG 27832 Query 24629 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 24688 ||||| || || | ||||| || || ||||| ||||| |||||||| | |||||| || Sbjct 27831 GTCCACCTCCTCGGCGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAGATATC 27772 Query 24689 ATGATATTGAATTGGAAAAATAACAAA 24715 || || | || | || || ||||| Sbjct 27771 GTGGTACTCGATGAGGAAGATGACAAA 27745 >seq2631 Length=7319754 Score = 154 bits (170), Expect = 2e-32 Identities = 309/445 (69%), Gaps = 16/445 (4%) Strand=Plus/Minus Query 24147 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 24206 ||||||| |||||| || || ||||| | ||| |||||||| ||||| || ||||| || Sbjct 2078997 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 2078938 Query 24207 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 24266 || | || | ||||| ||||| ||||| || ||||||||||| | | ||| ||| Sbjct 2078937 CCTTGTTTCCTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 2078878 Query 24267 GCCGCAAAGGCAATAAGTCTTTCTCCAT---AACCGGCGCTGTCATGTATCC-ACTTTTG 24322 |||||||| || | |||||||| | | | ||| |||| || | Sbjct 2078877 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACATCTTTGTTCCCAATCCAACACAAG 2078818 Query 24323 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 24382 | ||||| | |||||||| || |||| ||||||||| | || ||||| |||||| | | Sbjct 2078817 A-CCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGGCATTGAAGAGAAATTC 2078760 Query 24383 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 24442 |||| || |||||||| || ||| ||||| | ||||||| || || ||||| || Sbjct 2078759 CCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATGTCAGAATGTAT 2078702 Query 24443 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG-CCTCGGTAATCTGTA-CTTCT 24500 |||||| | || ||||| || || || || || | || |||||||| | |||| Sbjct 2078701 GTTTTCTGTAGCAATTTGGAAGCCATAAAACCAGAAGGAGTTCTGTAATCTGAATTTTCT 2078642 Query 24501 ATACAAAATCGTTCTGCTAAATTTTCATTCACTAT-TCCGTCACTGGCTGCAAAAAACGC 24559 ||||| | || | || ||||||| |||||| || |||| ||||||||| || Sbjct 2078641 GAACAAATT--GTCCACCAAGTTTTCATCCACTATCCCCATCACATCCTGCAAAAA--GC 2078586 Query 24560 CAATACATGTTTTATAAAAT-ATTT 24583 || | || |||||||| |||| Sbjct 2078585 CAGAATATAGGATATAAAATCATTT 2078561 >seq6459 Length=15015882 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||||| Sbjct 12328824 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 12328765 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 12328764 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 12328705 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||||||||||| | |||| | ||| || |||| Sbjct 12328704 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGATCATCAGGAA 12328654 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 12325970 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 12325911 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 12325910 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 12325851 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 12325850 CTGTTTCTTATACCATA 12325834 Score = 102 bits (112), Expect = 1e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||||||||| |||||||| |||||||||||||| | || |||||||||| | || Sbjct 12315203 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 12315144 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 || || |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 12315143 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 12315084 Query 54149 TCCAAGTATAT 54159 |||| ||| || Sbjct 12315083 TCCAGGTAAAT 12315073 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||||| || || || || || || || || || | Sbjct 12298259 CACTGAACACTTTCTTTGTTTCTTTGTGTAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 12298200 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || || || | ||||| | || || ||| |||| || | || ||| || | Sbjct 12298199 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 12298140 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 12298139 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 12298094 >seq10880 Length=11791330 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 10272723 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 10272782 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 10272783 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 10272842 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 10272843 ACCACTCTTTCCCC 10272856 >seq7011 Length=47169369 Score = 104 bits (114), Expect = 3e-17 Identities = 153/216 (71%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 21922 ATCTAGAGATTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 21981 ||| | || ||| ||||||| | |||||||||| | || |||| | || ||||| || Sbjct 6213737 ATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGC 6213678 Query 21982 TATTCTATCCCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCC 22041 |||| ||| || | || || | ||| | | ||| ||| ||||| || | || || Sbjct 6213677 AATTCGATCACCGTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACC 6213618 Query 22042 TATATTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAG 22098 | |||||| ||||||||||| ||||| ||||| |||||| |||||| | |||| Sbjct 6213617 AACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGC 6213558 Query 22099 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 22134 | || || |||| ||||||| ||| ||||| || Sbjct 6213557 AGCCAAGCCTGACCGTGGAGCTACTCTTCCATAACA 6213522 >seq1678 Length=10304083 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| Sbjct 211304 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 211363 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 211364 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 211423 >seq1330 Length=10395599 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 21922 ATCTAGAGATTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 21981 ||| | || ||| ||||||| | ||| |||||| | || |||| | | || ||||| || Sbjct 2358132 ATCCAAAGCTTGAACTTCTTCTATTTCCGGATAAAAAATCCGTTCACAAATGAGCTGTGC 2358073 Query 21982 TATTCTATCCCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCC 22041 |||| ||| | | | || || | ||| | | ||| ||| |||| || | || || Sbjct 2358072 AATTCGATCACACTTTTTGACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACC 2358013 Query 22042 TATATTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT 22089 | |||||| ||||||||||| ||||| ||||| |||||| |||||| Sbjct 2358012 AACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAAT 2357965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593636749761840