Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq888 113 4e-20 seq9220 104 2e-17 seq4692 100 2e-16 seq4141 93.3 4e-14 >seq888 Length=8072957 Score = 113 bits (124), Expect = 4e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || ||| | ||||| | ||||| || ||||| ||| | || ||||| Sbjct 5993577 AAAAATGCAGATTTTCCTGAAAACCCTTACGGGGAAGACCATCACCCTCAAAGTTGAACC 5993518 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || ||| | | || | ||| || || ||||| ||||| | || || Sbjct 5993517 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 5993458 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| |||||||| |||||||| ||||| |||||||||||| ||| || | || || Sbjct 5993457 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 5993398 Query 29138 CAATATTCAGAAGGAATCTACTCTTCA 29164 ||||||||| ||||| ||||||||||| Sbjct 5993397 CAATATTCAAAAGGAGTCTACTCTTCA 5993371 >seq9220 Length=42800024 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||||| ||||| | ||||| || ||||| ||| ||| | |||||| Sbjct 9830195 AAAATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGCTGAACCC 9830136 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | || | ||| | || ||||| ||||| | || ||| Sbjct 9830135 TCGGATACGATATAAAATGTAAAGACCGAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 9830076 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || ||||||| |||||||| ||||| |||||||||||| ||| || | || ||| Sbjct 9830075 CAGCAAAGACCGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 9830016 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||| | | ||||| Sbjct 9830015 AATATTCAAAAGGAGTCTACTCTTTATCTCGTGTT 9829981 >seq4692 Length=25524837 Score = 100 bits (110), Expect = 2e-16 Identities = 152/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||||| ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 22647815 AAAATGCAGATTTTCATGAAAACCCTTACGGG-AAGACCATCACCCTCGATGTTGAACCC 22647757 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | || | ||| | || ||||| ||||| | || | | Sbjct 22647756 TCGGATACGATAGAAAATGTAAAGGCCGAGATCCAGGATAAGGAAGGAATTCCTCCTGCT 22647697 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||| |||||||| ||||| |||||||||||| | ||| || | || ||| Sbjct 22647696 CAGCAAAGAGGGATCTTTGCTGGCAAGCAACTGGAAGATGCATGGACTTTGTCTGACTAC 22647637 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||||| | ||||| Sbjct 22647636 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 22647602 >seq4141 Length=17607553 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||| Sbjct 16722816 AAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 16722875 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || | | | | || | ||| || || || || ||||| | || | Sbjct 16722876 CTCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTGC 16722935 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 || |||||||| |||||||| ||||| |||||||||||| ||| || | || || Sbjct 16722936 TCCGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 16722995 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||| ||| ||||| ||||||||||| | ||||| Sbjct 16722996 CAATAGTCAAAAGGAGTCTACTCTTCATCTTGTGTT 16723031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428276315795615