Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq4360 206 3e-48 seq667 168 8e-37 seq9111 156 5e-33 >seq4360 Length=7120179 Score = 206 bits (228), Expect = 3e-48 Identities = 596/912 (65%), Gaps = 15/912 (2%) Strand=Plus/Plus Query 9459 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATAT 9518 ||| ||| | || ||| | |||||| || ||||| | | || | |||||||| | Sbjct 1945905 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTTCATGGTGGGCCTCTTGGGCAACGT 1945964 Query 9519 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 9578 |||||||||| || |||||| ||||| || | || || | || ||||| | || Sbjct 1945965 GGTAGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCT 1946024 Query 9579 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 9638 | | ||| |||| || || ||| |||| || || || || | || || ||||| ||||| Sbjct 1946025 GCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACTA 1946084 Query 9639 TATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGT 9698 | | | | | ||| | ||| || | | | ||||||| | ||| ||| | Sbjct 1946085 TGTCAG---GGAGCATAACTGGGTCTTCAGCCATGGCATGTGTAAGGTCCTCTCGGGGTT 1946141 Query 9699 GTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTA 9758 | | ||| |||||||| || |||||| ||| ||||| || || | |||||||| Sbjct 1946142 TTATCACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGTA 1946201 Query 9759 TCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCATAGT 9818 || || ||||| ||||||| ||| | | || || || || | ||| | | Sbjct 1946202 CCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAACCAGGACTGTCACTTTTGGTGTCAT 1946261 Query 9819 TACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCA 9878 || | | |||||| ||||||| | | | || ||||||||| | || | Sbjct 1946262 CACTAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATTTTCTA 1946321 Query 9879 TGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGTCTA 9937 ||| |||| | | || | || || | || |||||| || | Sbjct 1946322 TGGGACTGAAGA-GTTGTTTCCAGAGACTCTTTGCAGTGCTATTTACCCACAGGATACAG 1946380 Query 9938 CAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTC 9997 | || ||||||| |||| | | ||| || || ||||| ||| |||| Sbjct 1946381 TATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTGTGTCTCGCTTTCCCTC 1946440 Query 9998 TGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCA 10057 ||||| ||||||| |||||||| | ||| |||| || ||| ||||| ||||||| | Sbjct 1946441 TGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCAGTA 1946500 Query 10058 AGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTT 10117 | || ||||||||||||||| ||||||| ||||||||||||| | | ||| |||| | Sbjct 1946501 AAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATTTTCT 1946560 Query 10118 GGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA-----A 10172 ||||||||||||| | | | |||| | ||||||| | ||| || ||||| | Sbjct 1946561 GGACACCCTACAATGTGGCTATCCTTATCTCTACCTAT----CAATCCGTCTTATTTGGA 1946616 Query 10173 CCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGC 10232 | || | |||| | ||||| | ||||| || ||||| || | | || Sbjct 1946617 CTTG-ACTGTGAACGGAGCAAGCATCTGGACCTGTTCGTGCTGGCGACGGAGGTGATCGC 1946675 Query 10233 CTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAG 10292 |||| | ||||| ||| | ||||||||||||||||| || || || |||| || | | Sbjct 1946676 CTACGCCCACTGCTGCGTGAACCCAGTGATCTACGCCTTTGTTGGAGAGAGATTCCGGAA 1946735 Query 10293 ACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTT 10352 ||||| |||||||||||||| ||||| | | |||| |||| |||||||| || Sbjct 1946736 GTACCTGCGCCACTTCTTCCACAGGCACGTGCTCTTGCACCTGGGCAAATACATCCCATT 1946795 Query 10353 CCTGTCTGGTGA 10364 ||| || |||| Sbjct 1946796 CCTTCCTAGTGA 1946807 Score = 206 bits (228), Expect = 3e-48 Identities = 596/912 (65%), Gaps = 15/912 (2%) Strand=Plus/Plus Query 176345 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATAT 176404 ||| ||| | || ||| | |||||| || ||||| | | || | |||||||| | Sbjct 1945905 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTTCATGGTGGGCCTCTTGGGCAACGT 1945964 Query 176405 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 176464 |||||||||| || |||||| ||||| || | || || | || ||||| | || Sbjct 1945965 GGTAGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCT 1946024 Query 176465 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 176524 | | ||| |||| || || ||| |||| || || || || | || || ||||| ||||| Sbjct 1946025 GCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACTA 1946084 Query 176525 TATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGT 176584 | | | | | ||| | ||| || | | | ||||||| | ||| ||| | Sbjct 1946085 TGTCAG---GGAGCATAACTGGGTCTTCAGCCATGGCATGTGTAAGGTCCTCTCGGGGTT 1946141 Query 176585 GTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTA 176644 | | ||| |||||||| || |||||| ||| ||||| || || | |||||||| Sbjct 1946142 TTATCACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGTA 1946201 Query 176645 TCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCATAGT 176704 || || ||||| ||||||| ||| | | || || || || | ||| | | Sbjct 1946202 CCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAACCAGGACTGTCACTTTTGGTGTCAT 1946261 Query 176705 TACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCA 176764 || | | |||||| ||||||| | | | || ||||||||| | || | Sbjct 1946262 CACTAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATTTTCTA 1946321 Query 176765 TGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGTCTA 176823 ||| |||| | | || | || || | || |||||| || | Sbjct 1946322 TGGGACTGAAGA-GTTGTTTCCAGAGACTCTTTGCAGTGCTATTTACCCACAGGATACAG 1946380 Query 176824 CAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTC 176883 | || ||||||| |||| | | ||| || || ||||| ||| |||| Sbjct 1946381 TATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTGTGTCTCGCTTTCCCTC 1946440 Query 176884 TGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCA 176943 ||||| ||||||| |||||||| | ||| |||| || ||| ||||| ||||||| | Sbjct 1946441 TGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCAGTA 1946500 Query 176944 AGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTT 177003 | || ||||||||||||||| ||||||| ||||||||||||| | | ||| |||| | Sbjct 1946501 AAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATTTTCT 1946560 Query 177004 GGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA-----A 177058 ||||||||||||| | | | |||| | ||||||| | ||| || ||||| | Sbjct 1946561 GGACACCCTACAATGTGGCTATCCTTATCTCTACCTAT----CAATCCGTCTTATTTGGA 1946616 Query 177059 CCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGC 177118 | || | |||| | ||||| | ||||| || ||||| || | | || Sbjct 1946617 CTTG-ACTGTGAACGGAGCAAGCATCTGGACCTGTTCGTGCTGGCGACGGAGGTGATCGC 1946675 Query 177119 CTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAG 177178 |||| | ||||| ||| | ||||||||||||||||| || || || |||| || | | Sbjct 1946676 CTACGCCCACTGCTGCGTGAACCCAGTGATCTACGCCTTTGTTGGAGAGAGATTCCGGAA 1946735 Query 177179 ACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTT 177238 ||||| |||||||||||||| ||||| | | |||| |||| |||||||| || Sbjct 1946736 GTACCTGCGCCACTTCTTCCACAGGCACGTGCTCTTGCACCTGGGCAAATACATCCCATT 1946795 Query 177239 CCTGTCTGGTGA 177250 ||| || |||| Sbjct 1946796 CCTTCCTAGTGA 1946807 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/251 (69%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 176429 ATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTT 176488 ||||| || | |||||||| | || ||||| | || | ||| |||| || |||||| | Sbjct 1885519 ATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGACCT 1885460 Query 176489 GCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGAATGTATCATGATTGGA 176547 ||| || || || || |||| || | ||| |||| | | || | |||| |||| Sbjct 1885459 GCTCTTCCTGTTCACACTGCCCTTCTTGATCTACTACAAGTCGACGG----ATGACTGGA 1885404 Query 176548 CTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCC 176607 ||| ||| | || ||||||| | ||| || | | ||||| |||||||| Sbjct 1885403 TTTTCGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTACACAGGCTTGTACAGCG 1885344 Query 176608 AGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAA 176667 || |||||| |||||||||||| || | |||||||| || || | ||| |||| || Sbjct 1885343 AGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCCATCGTCCATGCCGTGT 1885284 Query 176668 CTGCTTTGAGG 176678 ||| |||||| Sbjct 1885283 TTGCCTTGAGG 1885273 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/251 (69%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 9543 ATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTT 9602 ||||| || | |||||||| | || ||||| | || | ||| |||| || |||||| | Sbjct 1885519 ATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGACCT 1885460 Query 9603 GCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGAATGTATCATGATTGGA 9661 ||| || || || || |||| || | ||| |||| | | || | |||| |||| Sbjct 1885459 GCTCTTCCTGTTCACACTGCCCTTCTTGATCTACTACAAGTCGACGG----ATGACTGGA 1885404 Query 9662 CTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCC 9721 ||| ||| | || ||||||| | ||| || | | ||||| |||||||| Sbjct 1885403 TTTTCGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTACACAGGCTTGTACAGCG 1885344 Query 9722 AGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAA 9781 || |||||| |||||||||||| || | |||||||| || || | ||| |||| || Sbjct 1885343 AGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCCATCGTCCATGCCGTGT 1885284 Query 9782 CTGCTTTGAGG 9792 ||| |||||| Sbjct 1885283 TTGCCTTGAGG 1885273 >seq667 Length=10875949 Score = 168 bits (186), Expect = 8e-37 Identities = 132/157 (84%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| |||||||| |||||| || || || || ||||||||||||||||| | ||| Sbjct 10101475 CAGCGCCGCAGCCTCAGCCTGAGCGTCTTCAGATTCTCCCCCAGGGAGTTCACATGCTCC 10101534 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | | ||||||||| || |||||||||||||||||||||||||||||| Sbjct 10101535 TTGAT---GTCTGGGTCGTGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACTGG 10101591 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||||| ||| ||||| ||||||||||||| Sbjct 10101592 ATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 10101628 Score = 120 bits (132), Expect = 4e-22 Identities = 84/96 (88%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980 ||||||||| ||||| | ||||||||||| ||||||||||| |||||||||||||||| Sbjct 10099148 CTCAGTTTTGTATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACT 10099207 Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 | |||||||| |||||||| ||||| || ||||||| Sbjct 10099208 CACTCATGGCTTTGTAGACGCCTTTCTCTTGGAGCT 10099243 >seq9111 Length=11462142 Score = 156 bits (172), Expect = 5e-33 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | |||||| || ||||||| ||||||||| |||||||| ||| Sbjct 5684302 AGGCCCGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 5684243 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| || || | |||||||||||||||||| ||||| | | | || Sbjct 5684242 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 5684183 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| ||||| || ||||| ||||| Sbjct 5684182 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 5684142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589992470649320