Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3835 125 6e-24 seq2044 102 7e-17 seq5683 91.5 1e-13 seq2276 91.5 1e-13 seq7399 89.7 4e-13 seq3160 89.7 4e-13 >seq3835 Length=881625 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || |||| |||| || |||||||| || ||||| ||||| | Sbjct 142148 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 142207 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 142208 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 142267 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || |||||| ||||| | ||| || |||| ||||||| | Sbjct 142268 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 142327 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | || || || || || ||||| Sbjct 142328 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 142374 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || |||| |||| || ||||| || || ||||| ||||| | Sbjct 142376 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 142435 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 142436 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 142495 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || ||| || ||||| | ||| || |||| ||||||| Sbjct 142496 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 142555 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | ||| |||||||||||||| | || || || || || |||||||||| Sbjct 142556 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGA 142607 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || |||||||| || ||||| ||||| | || || || | || Sbjct 141935 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 141994 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | |||||| || || Sbjct 141995 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCT 142054 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| || | ||| |||||| Sbjct 142055 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 142114 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || || || || ||||| Sbjct 142115 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 142146 >seq2044 Length=20526591 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| |||||||| || || ||||| ||||| | |||||| | | || |||||||| Sbjct 13287238 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 13287297 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || ||| | || || ||||||||||| || | ||||||||| || ||||||| Sbjct 13287298 TTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTT 13287357 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | ||| || |||| |||||| || | ||| ||||||||||| || Sbjct 13287358 GCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTG 13287417 Query 21153 AACGTTTTGACAAATATTTGCATT 21176 | || || || || || |||||| Sbjct 13287418 AGGGTCTTCACGAAGATCTGCATT 13287441 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 20949 CCCCCTCGCA-GCCTGAGCACC-ATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 || ||||| | | | ||||||| | |||| |||||||| || || ||||| ||||| | Sbjct 13286337 CCACCTCGGACGGCGGAGCACCCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 13286396 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| | | || ||||||||||| || ||| | || | ||||||||||| || Sbjct 13286397 ACAGGGTGCGCCCATCTTCCAGCTGTTT-CCAGCAAAGATCAACCTCTGCTGGTC--AGG 13286453 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTT--CACCTGGCCGACAGTATCACCGGGCTC 21124 | | ||||||||||| | ||||| || ||| | ||| || |||| |||||| Sbjct 13286454 GGATGCCTTCCTTGTTCCTGGTCTTTGCCTTGACACATTCTCGATGGT-TCACTGGGCTC 13286512 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || || || || ||||| Sbjct 13286513 AACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 13286563 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||| || || ||||| ||||| | |||||| | | || Sbjct 13285964 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 13286023 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| | || | ||||||||||| || | |||||||||||| Sbjct 13286024 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 13286083 Query 21084 GCGATCTTT 21092 ||||||| Sbjct 13286084 TGGATCTTT 13286092 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||||| |||||| ||||| ||||| | |||||| | | || Sbjct 13286581 AGCACCAGGTGCAGGGTGGAT--CTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 13286638 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || | ||||||||||| || | |||||||||||| Sbjct 13286639 TCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 13286698 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 | |||| ||| || | ||| || |||| |||||| || | ||| |||||| Sbjct 13286699 CTGGACTTTGCTTTGACGTTCTCGA-TGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 13286757 Query 21144 TTGCCGGT 21151 ||||| || Sbjct 13286758 TTGCCAGT 13286765 >seq5683 Length=19003911 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | | ||||| |||| |||||||| || || ||||| ||||| | Sbjct 4210462 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 4210521 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||||||||||||| ||| | || || | ||||||||| || Sbjct 4210522 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 4210581 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| || || ||| || | | | || |||| |||||| Sbjct 4210582 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 4210641 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| ||||| ||||| | | || || ||||| || ||||| || Sbjct 4210642 TCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTT 4210691 >seq2276 Length=6341472 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| |||| ||||||||||| || ||||| ||||| | Sbjct 2189084 CCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTCTAGTCTGAG 2189143 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || | || | |||||| |||||||||||||| | || || | ||||||||| | Sbjct 2189144 AGATTGCGGCCATCCTCCGGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAGG 2189203 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| | |||||| ||| | ||| || | | || || | ||||||| Sbjct 2189204 ATGCCCTACTTGTCTTGGATTTCGGCTTTGACATTCTCAGTGGTGTCCCTGGGCTCCACC 2189263 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCT 21184 || | ||| ||||||||||| | | || || ||||| || ||||| | ||| ||| Sbjct 2189264 TCAAGGGTGATGGTCTTGCCCATGAGGGTGTTCACAAAGATCTGCATCTCTGAGTCT 2189320 >seq7399 Length=1863 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||| |||| | |||||||| |||| ||||||||| || || ||||| ||||| | Sbjct 652 CCACCTTGCAGGCGCAGCACCATGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAG 711 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||||||||||||| || || ||||||||| || Sbjct 712 AGAGTGCAGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGATGCTGCTGGTCAGGTGGG 771 Query 21069 ACGCCTTCCTTGTC 21082 | ||| |||||||| Sbjct 772 ATGCCCTCCTTGTC 785 >seq3160 Length=4152596 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||| |||| | |||||||| |||| ||||||||| || || ||||| ||||| | Sbjct 635421 CCACCTTGCAGGCGCAGCACCATGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAG 635362 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||||||||||||| || || ||||||||| || Sbjct 635361 AGAGTGCAGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGATGCTGCTGGTCAGGTGGG 635302 Query 21069 ACGCCTTCCTTGTC 21082 | ||| |||||||| Sbjct 635301 ATGCCCTCCTTGTC 635288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422200362535028