Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq888 102 1e-16 seq7011 95.1 2e-14 seq9220 93.3 6e-14 seq4692 93.3 6e-14 seq4141 84.2 3e-11 >seq888 Length=8072957 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 5993347 CCACCACGAAGTCTCAAAACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 5993405 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 5993406 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 5993465 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 5993466 AATTCCTTCCTTATCCTG 5993483 >seq7011 Length=47169369 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 10437 GGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATT 10496 || ||||||| |||| ||||||| | || | || ||| ||| | ||||||||| | Sbjct 6213519 GGGTGTTATGGAAGAGTAGCTCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTA 6213578 Query 10497 GGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCAT 10556 |||||||| || || || |||||||||||||||||||| || || || | |||||| | Sbjct 6213579 GGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTT 6213638 Query 10557 TCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAA 10616 || ||| | ||| | | || | || ||| |||| | || | || || ||| Sbjct 6213639 GGCAAAGAAAAGTTTGAAGTCAAAAACGGTGATCGAATTGCACAGCTCATTTGCGAACGG 6213698 Query 10617 ATTTTATATCCTAAAAT 10633 ||||| ||||| |||| Sbjct 6213699 ATTTTTTATCCAGAAAT 6213715 >seq9220 Length=42800024 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | || | |||||| || ||| || ||||| || || || Sbjct 9829966 CCACCACGAAGTCTCAACACGAGATAAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 9830024 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| ||| |||||||||||| ||||| Sbjct 9830025 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 9830084 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 9830085 AATTCCTTCCTTATCCTG 9830102 >seq4692 Length=25524837 Score = 93.3 bits (102), Expect = 6e-14 Identities = 107/139 (77%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 22647587 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 22647645 Query 146110 AAGAGTTC-TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| | ||| ||| || | ||| || |||||||| ||| |||||||||| | |||| Sbjct 22647646 CAAAGTCCATGC-ATCTTCCAGTTGCTTGCCAGCAAAGATCCCTCTTTGCTGAGCAGGAG 22647704 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| ||||| || Sbjct 22647705 GAATTCCTTCCTTATCCTG 22647723 >seq4141 Length=17607553 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || |||| || || || Sbjct 16723046 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAC-TATTGTAGTCAGA 16722988 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| ||||||| || | ||||| Sbjct 16722987 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCGGAGCAGGAGG 16722928 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || || || Sbjct 16722927 AATTCCTTCCTTCTCCTG 16722910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743420140783360