Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1989 181 1e-40 seq4087 113 4e-20 seq10880 111 1e-19 seq2631 105 6e-18 seq1678 98.7 9e-16 >seq1989 Length=5200062 Score = 181 bits (200), Expect = 1e-40 Identities = 599/919 (65%), Gaps = 22/919 (2%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | | ||| ||| ||| || | | |||| ||| ||| Sbjct 4401919 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTCGACACCACTCCCATCC 4401860 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || | |||||||| |||||||| || || |||| | ||||||||| | Sbjct 4401859 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 4401805 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACA 16061 ||||||| ||||| || || | | || | | | | || | |||| |||| || Sbjct 4401804 CCATAAAGTCAAATGGGTTCTCT--ACTCT-GAAAACCTTGCTAAAACCCAGTTCCGGCA 4401748 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 ||| || |||||| | || || || || ||||||| | || ||||| || || | Sbjct 4401747 TG--TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGA 4401690 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 || ||||| | || || || | || | | |||||| ||| || | || ||| Sbjct 4401689 GCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTC 4401630 Query 16182 TATCTCTTACTACACTATTTAAC-GGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 | |||||| | | || | | || || | | ||| || ||||| | |||||| Sbjct 4401629 TTCCTCTTATT-CTCTCCTCCAGTGGTTTGTGTGCCAGGTGATTGAACATCAGGCAAGCA 4401571 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||||| || || || || || | ||| || | || || ||||| || || || ||| Sbjct 4401570 AAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGC 4401511 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || ||||||||||| || | ||| ||||| | ||||| ||||||||||| || ||| Sbjct 4401510 ATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCT 4401454 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT-TCTAtttttactttctatcca 16419 || |||| ||||| | || | || || || || || || ||| | | ||||| Sbjct 4401453 TCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTC-CCCAATCCA 4401395 Query 16420 ttttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAA 16479 | ||||||| ||| | || ||||| ||| | || || ||||| || Sbjct 4401394 GTGCAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCG 4401335 Query 16480 ATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGA 16539 | | | || ||||| |||| || ||||| || || || |||||||||||| | || Sbjct 4401334 AAATTCCCTTACTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGA 4401275 Query 16540 ATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC 16599 ||| || || ||||| || || || || ||| | || || | ||||| | | || || Sbjct 4401274 ATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAAC 4401215 Query 16600 TTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659 ||| | | | | || | |||||| | || ||||| ||||| || ||| |||| || Sbjct 4401214 TTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGCTACAAAGAA 4401155 Query 16660 CGCAAGTATGTGTTTAATAAAAtttttttCGT-TATCTGAAAGTTTTAACCAGTCAGAAA 16718 | || | || ||||||| | | || | || | | || ||||| ||| Sbjct 4401154 AACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATT-CCCAGTGCCAAA 4401096 Query 16719 AATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACA 16778 || || || | || ||||| || | ||||| || ||||| | ||||| ||||||| Sbjct 4401095 TGTCCTTGGACAGGTCCACCTCCTCCGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACA 4401036 Query 16779 TTTTCCATATGTCTTCGTA 16797 | | ||| || || | ||| Sbjct 4401035 TCTGCCAGATATCATGGTA 4401017 >seq4087 Length=903614 Score = 113 bits (124), Expect = 4e-20 Identities = 213/311 (68%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| || ||||| || || || | |||||||||||| ||||| || | Sbjct 28075 TTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 28016 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGT 16607 | ||||| || || || || ||||| || || | ||||| | || || ||||| | Sbjct 28015 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGC 27956 Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA 16667 ||| | || | |||||||| || ||||| |||||||| |||||||| || || || | Sbjct 27955 TAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCCAGAA 27896 Query 16668 TGTGTTTAATAAAAtttttttCGT-TATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTT 16726 || ||||||| | | || | || | | || ||||| || || || Sbjct 27895 CATGGAATATAAAATATCTCTCCTCGGGCTTCAGGGATT-CCCAGTGCTGAATGTCCTTG 27837 Query 16727 GATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCAT 16786 || | || ||||| || | ||||| || ||||| | ||||| |||||||| | ||| Sbjct 27836 GACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAG 27777 Query 16787 ATGTCTTCGTA 16797 || || | ||| Sbjct 27776 ATATCGTGGTA 27766 >seq10880 Length=11791330 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || |||||| | | | || |||||||| | Sbjct 10261331 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAAAAC 10261390 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 10261391 GCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 10261450 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 10261451 CCATAAAATCAAAAGGATTTTCTG 10261474 >seq2631 Length=7319754 Score = 105 bits (116), Expect = 6e-18 Identities = 231/344 (67%), Gaps = 3/344 (1%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 |||||||| | ||| || || || || || || || || | || || |||||||| || Sbjct 2079009 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 2078950 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| |||||| |||| | | ||| ||||| ||||| |||||||||||||| Sbjct 2078949 CCAGGCATCAGTCCTTGTTTCCTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 2078890 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 | | ||| ||| |||||| || | | || || || | || || ||| | | Sbjct 2078889 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACATCTTTGTTCCCA 2078830 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| ||||| ||| || | || |||||| ||||| | || ||||| Sbjct 2078829 ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACAGGCATTGTTC-CAATGGCATTG 2078771 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | | | | |||||||| ||||| ||| | || || || || | ||||| || Sbjct 2078770 AAGAGAAATTCCCTTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGACTATTTATG 2078713 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCA 16578 || ||||| || || || | || || || || |||||||| || Sbjct 2078712 TCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAAAACCA 2078669 >seq1678 Length=10304083 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 209201 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 209260 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 209261 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 209320 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 209321 ACGACACGTTCACC 209334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462445901253800