Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq3590 1543 0.0 seq9220 131 1e-25 >seq3590 Length=21475887 Score = 1543 bits (1710), Expect = 0.0 Identities = 1366/1697 (80%), Gaps = 51/1697 (3%) Strand=Plus/Minus Query 107097 AGCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAA------------GGGTCT-T 107143 |||| ||||| || ||||||||||||| |||||| || | |||| | | Sbjct 13300412 AGCTAGTTTGTAGGGTCAGGTTACAGATCTCCATCAACGAACCAGATGTAAGGGGTTTCT 13300353 Query 107144 AGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTG 107203 ||||||| ||| ||| |||||| ||||| | |||| | | | ||| |||||| | || Sbjct 13300352 AGGCAGGTCTTTACTAAGGATACTTGTCCAGGTAAGAACTATTT-TTTGCCATCAGTTTG 13300294 Query 107204 GAGTTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCATTTTGTTCTGTC 107257 || |||||||||||||| |||| || ||||||||| | ||||||||||||||||| Sbjct 13300293 GAATTGAACTTGATGTTTCTGGGAATGATGAGTTTGTAACTGGAGGCATTTTGTTCTGTC 13300234 Query 107258 CAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGATCTCCCATCCCA 107313 ||||||| |||||||| | || |||||| ||| ||| |||| ||| || | || Sbjct 13300233 CAAGGATTGTGTCCTCCTCTTCTTTCCCTGTGGTCAATCTCCACCTG-TCTACCCTTCCG 13300175 Query 107314 TGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCT 107373 ||| |||| | ||||||| || || |||||| ||| | ||||||||||||||| Sbjct 13300174 TGACAATGGTTCAATGGAAGA-GA--CTCTGCCGGCAGCATTACTTGTGGGCCCTGGGCT 13300118 Query 107374 GCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAG 107433 ||||||||||||||||| |||| |||||| |||||| | ||||| || ||||| | Sbjct 13300117 GCTATATGCTGCTGGCCATTGTGGCTCTGAAACTTTCTTTAAGGTTGAAGTGTGACTCTG 13300058 Query 107434 ATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACA 107493 | ||||| ||||||||||||||| || || || ||| |||||||| | || ||||| | Sbjct 13300057 ACCACTTGGGTCTGGAGTCCAGGGAATTTCAAAGCCAGTACTGTAGGAATATCTTGTATA 13299998 Query 107494 ATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACC 107553 || |||||| |||||||||||||| || ||||||||||| |||||||| |||||||||| Sbjct 13299997 ATTCCCTGAAACTGCCAGCAAAGAGGTCTATCAACTGTTCAGGGATCACCCGAGGGGACC 13299938 Query 107554 AGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTC 107613 ||||| ||| | ||||| | || | |||||||| || ||||| |||||| |||| Sbjct 13299937 CAGAAGCCGTGTTTCAGGCTATTCTGAATAACCTGGAGGTCAAGAAGAAGCGGGAGCCTT 13299878 Query 107614 TCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGA 107673 | || | |||| | || ||| | | |||||||||||||| ||||||||||| |||||| Sbjct 13299877 TTACAGACACCCACTATCTCTCCCTCACCAGAGACTGTGAACGCTTCAAGGCGGAAAGGA 13299818 Query 107674 AGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGG 107733 |||||||||||||||||||||| ||||||||| | || ||||| ||||| ||||| |||| Sbjct 13299817 AGTTCATACAGTTCCCACTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCGTACTCTATGG 13299758 Query 107734 TGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGA 107793 || | |||||||||||||||||||||||| |||| |||||||| |||||||||||||||| Sbjct 13299757 TGATTCATGAGAAGATTGAAAACTTTGAAAGGCTACTGCGAGCTGTGTATGCCCCTCAGA 13299698 Query 107794 ACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGG 107853 |||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||| | Sbjct 13299697 ACATATACTGCATCCACGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCAGTCAAAG 13299638 Query 107854 CCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATG 107913 | |||||||| |||||||| ||||||||||| ||||||||| |||| | |||| |||| | Sbjct 13299637 CAATTATTTCATGCTTCCCAAATGTCTTCATAGCCAGTAAGCTGGTTCGGGTGATTTACG 13299578 Query 107914 CCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAG 107973 ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 13299577 CCTCCTGGTCCAGGGTGCAAGCTGACCTCAACTGCATGGAAGACTTGCTCCAGAGCTCAG 13299518 Query 107974 TGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCG 108033 |||||||||| ||||| ||||||||||||||||| ||||| || |||||| |||||||| Sbjct 13299517 TGCCATGGAAATACTTCCTGAATACATGCGGGACGGACTTTCCTCTAAAGAGCAATGCCG 13299458 Query 108034 AGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTT 108093 ||||||||| ||| |||||||||||||| || | ||| || |||||| | ||||||||| Sbjct 13299457 AGATGGTCCAGGCTCTCAAGATGTTGAATGGGAGGAATAGCATGGAGACAGAGGTACCTC 13299398 Query 108094 CTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACC 108150 | || |||| ||| |||||| |||| | || |||| ||| |||||| | ||| Sbjct 13299397 CCAAGCACAAACAAACCCGCTGGGAATATCACTTTGAGGTAGTGGGGGACACATTACACC 13299338 Query 108151 CTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCT 108210 |||| ||||| |||||| ||||||||| |||||||| | ||||| ||||||||||| | Sbjct 13299337 TAACCAACAAGAAGAAGGATCCTCCCCCTTATAATTTAACTATGTTTACAGGGAATGCGT 13299278 Query 108211 ATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGAC 108270 || ||||||| || |||| |||||||||||||| || | ||||||||||||||| || Sbjct 13299277 ATATTGTGGCTTCCCGAGATTTTGTCCAACATGTTTTGAAGAACCCTAAATCCCAACAAC 13299218 Query 108271 TGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGC 108330 || |||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 13299217 TGATTGAATGGGTAAAAGACACCTATAGCCCTGATGAACACCTCTGGGCCACCCTTCAGC 13299158 Query 108331 GTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGA 108390 |||| | ||||||||||||||||||||| | |||||||||||| ||||||||||||||| Sbjct 13299157 GTGCACGGTGGATGCCTGGCTCTGTTCCCAACCACCCCAAGTACGACATCTCAGACATGA 13299098 Query 108391 CTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGC 108450 || | || |||||||| |||||||||||| | || |||||||| || | ||| || | Sbjct 13299097 CTTCTATTGCCAGGCTGGTCAAGTGGCAGGATCATGAGGGAGACATCGATAAGGGTGCTC 13299038 Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 |||| || || |||||||||||||| | | |||| |||| |||| ||||| |||||| Sbjct 13299037 CTTACGCCCCTTGCTCTGGAATCCACCAGCGGGCTGTCTGTGTTTATGGGGCTGGGGACT 13298978 Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATG 108570 || ||||||| || || ||||||||||| ||||| |||||||||||||| | ||| |||| Sbjct 13298977 TGCACTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGTTTGACCCAAAGGTAGATG 13298918 Query 108571 ATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAAC 108630 |||| | || |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 13298917 ATAATGCTCTTCAGTGCTTAGAAGAGTACCTACGTTATAAGGCCATCTATGGGACTGAAC 13298858 Query 108631 TTTGAG-----CT------GCA-------CTGT-GGGCCAGGGACTGTGCCAACATGCCC 108671 |||||| || ||| |||| |||| || | ||| | ||||||| | Sbjct 13298857 TTTGAGACACACTATGGGAGCATTGCTACCTGTGGGGCAAGAGCATGTACAAACATGCTC 13298798 Query 108672 AGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCC 108731 || | | |||| || ||| ||||||| ||| |||||| || ||| | ||||||||| Sbjct 13298797 AGAACTTGCTGGGACAGTG-CGGGTGGGAGACCAGGGCTTTGCAATTCGTGGCATCCCTT 13298739 Query 108732 AGGGTCAGAGGGCTGCT 108748 ||| | || || ||||| Sbjct 13298738 AGGATAAGGGGTCTGCT 13298722 >seq9220 Length=42800024 Score = 131 bits (144), Expect = 1e-25 Identities = 574/897 (64%), Gaps = 51/897 (6%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | ||| Sbjct 29433415 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAG 29433474 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||||||| | ||| | ||| |||||||| | || || | Sbjct 29433475 ATTGAAATGCTTGACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 29433534 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || ||| ||| || | | || || || | || ||| |||| Sbjct 29433535 CATGTGGACACAAAATCC---GAGGATTCCTATTTAGCTGCAGTGATGGGCATCGCTTCC 29433591 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| |||||||| ||||||| |||| ||||||||||| || ||| Sbjct 29433592 TGTTTCAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCATGGAGT 29433651 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCA--TGG 107981 | || || |||||||| ||||| ||| | ||| ||| | | | ||||| | ||| Sbjct 29433652 CGGGTTCAGGCTGACCTCAACTGCATGAAGGAC---CTCTATGCAATGAGTGCAAACTGG 29433708 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || || || || || ||||| || || ||| Sbjct 29433709 AAGTACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTC 29433768 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGA---GGTACCTTCTGAG 108098 | |||||| |||| | ||| | ||||| |||| | || | | || || | Sbjct 29433769 AGGAAGCTCAAGTTGTTAATGGGAGAAAACAGCCTGGAAACGGAGAGGATGCCATCCCA- 29433827 Query 108099 TCCaaaaaaaaTCGCTGGAAATACCGCTATGAGG---------------TGACAGACACA 108143 ||| || | | |||||| | || ||||||| ||||| ||||| Sbjct 29433828 --TAAAGAAGAAAGGTGGAAAAAGCGGTATGAGGTCGTTAATGGAAAGCTGACAAACACA 29433885 Query 108144 CTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGG 108203 | || ||| || | ||||| | || | ||| | || | || Sbjct 29433886 GGG------ACTGTCAAAAT---GCTTCCTCCGCTCGAAA---CACCGCTTTTTTCTGGC 29433933 Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATC 108262 | |||||| ||||||| | | | | | ||| |||| || | || || ||| Sbjct 29433934 AGTGCCTACTTTGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAACATC 29433993 Query 108263 CCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCAC 108322 | |||| | | || |||| ||||||| || ||||| || || | ||||||||||| Sbjct 29433994 CAAAAG-TTTATGGAGTGGGCGCAAGACACATACAGCCCTGATGAGTATCTCTGGGCCAC 29434052 Query 108323 CCTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCA-CCCCAAGTATCACATC 108380 | | ||| | | | | || | | || ||||| || || |||| || ||||| | | Sbjct 29434053 CATCCAGAG-GATTCCTGAAGTCCCGGGCTCACTTTCT-GCCAGCCATAAGTACGATTTG 29434110 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 || |||||| || | |||||| | ||||||||||| ||| ||||| ||||| | Sbjct 29434111 TCTGACATGCAAGCAGTTGCCAGGTTTGTCAAGTGGCAATACTTTGAGGGTGATGTTTCC 29434170 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 | ||| || || || | |||||| |||| |||| | | | | ||||||| || Sbjct 29434171 AAGGGTGCCCCCTACCCTCCCTGCGATGGAGTCCACGTGCGCTCGGTGTGCATTTTTGGA 29434230 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || || ||| || ||||||| || | || || ||| | || || || ||||||||| Sbjct 29434231 GCTGGTGACTTGAACTGGATGCTGCGCAAACACCACTTGTTTGCCAATAAGTTTGAC 29434287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348220272334242