Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq5683 132 4e-26 seq2044 111 1e-19 seq3835 105 5e-18 seq2276 96.9 3e-15 seq10991 89.7 4e-13 seq6237 87.8 1e-12 seq5018 87.8 1e-12 seq3 84.2 2e-11 >seq5683 Length=19003911 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | || |||| |||||| ||| ||| ||||| ||||||||||| Sbjct 4210461 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 4210520 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| ||||| ||||| ||||||| ||||| ||||| || || Sbjct 4210521 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 4210580 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| |||||| || || | | | | |||| | ||| || Sbjct 4210581 GATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 4210640 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| | ||| || || ||||||| || |||||||||||||| |||||||| Sbjct 4210641 CTCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTT 4210691 >seq2044 Length=20526591 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||| ||||| ||||||||||| ||| ||| | || ||||| || Sbjct 13287237 GTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 13287296 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 |||||||| || |||| || ||| ||||||||||| | || ||||| || || || Sbjct 13287297 CTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTT 13287356 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | | |||| | ||| ||||| | ||| || |||||||| || Sbjct 13287357 TGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 13287416 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| ||||| ||||| Sbjct 13287417 GAGGGTCTTCACGAAGATCTGCAT 13287440 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | ||||||||||| ||| ||| ||||| ||||||||||| | Sbjct 13285949 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 13286008 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| ||||| || || || ||||||| ||| ||||| ||||| Sbjct 13286009 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 13286068 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACC 45282 | || ||||||||| || ||| ||| || | | | | |||||||||| Sbjct 13286069 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCCCCACC 13286121 >seq3835 Length=881625 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | |||| |||||| || ||| ||||| ||||||||||| Sbjct 142376 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 142435 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || || | || ||| |||||||| || Sbjct 142436 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 142495 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| ||||| ||| || | | | |||| | ||||||| Sbjct 142496 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 142555 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || | ||| || |||||||| ||||| |||||||| ||||| ||||| ||| Sbjct 142556 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 142606 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | |||| |||||| || ||||||||| ||||||||||| Sbjct 142148 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 142207 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || || | || ||| |||||||| || Sbjct 142208 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 142267 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || || ||| || || ||| || | | | |||| | |||||| Sbjct 142268 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 142327 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| ||||| |||||||| ||||| ||||| Sbjct 142328 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 142374 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| || ||||||||| ||||||||||| Sbjct 141919 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 141978 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || || | || ||| |||||||| || Sbjct 141979 GAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 142038 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || || || || || ||| || | | | |||| | |||||| Sbjct 142039 GATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 142098 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || |||||||| ||||| |||||||| ||||| ||||| Sbjct 142099 CTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 142146 >seq2276 Length=6341472 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||| |||||| ||| ||||||||| ||||| ||||| Sbjct 2189083 GCCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTCTAGTCTGA 2189142 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | ||| | || ||| | ||||| || || ||||||| | ||| ||||| || | Sbjct 2189143 GAGATTGCGGCCATCCTCCGGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAG 2189202 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||| |||||| |||| || || | | | |||||| |||||| Sbjct 2189203 GATGCCCTACTTGTCTTGGATTTCGGCTTTGACATTCTCAGTGGTGTCCCTGGGCTCCAC 2189262 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || ||||||||| | || || ||||||||||| ||||| Sbjct 2189263 CTCAAGGGTGATGGTCTTGCCCATGAGGGTGTTCACAAAGATCTGCAT 2189310 >seq10991 Length=13028613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||| || || ||| ||| ||||| ||||||||| | Sbjct 8493162 GCCACCTCGCAGGCACAGCACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGA 8493103 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| ||||| || || | ||||| ||||| ||||| || || Sbjct 8493102 GAGAGTGCGGCCATCCTCCAGCTGTTTCCCAGCAAGTATCAGACGCTGCTGGTCAGGTGG 8493043 Query 45229 CACACCC-TCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | |||| |||||||| |||||| || || | | | |||| | ||| | Sbjct 8493042 GATACCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTAAATGGTGTCACTGGGCTCGA 8492983 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || ||||||||| | || |||||||||||||| ||||| Sbjct 8492982 TCTCGAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 8492934 >seq6237 Length=16698259 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||| |||||| ||| ||| | | |||| |||||| Sbjct 3405853 GCCACCTCGCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTCCCAGATGTCGTAGTCTGA 3405912 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || ||||| ||||| ||||| | || || |||| ||||| || || Sbjct 3405913 GAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAGTAGCAGATGCTGCTGGTCAGGTGG 3405972 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| |||||| || || || | | |||| | || || Sbjct 3405973 GATACCCTCCTTGTCTTGAATTTTGGCTTTGACATCCTCATTGGTGTCACTGGGCTTGAC 3406032 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | || || ||||||||||| || |||||||||||||| ||||| Sbjct 3406033 CTCAAGAGTGATGGTCTTGCCCGTAAGTGTCTTCACAAAGATCTGCAT 3406080 >seq5018 Length=1154 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||| |||||| ||| ||| | | |||| |||||| Sbjct 771 GCCACCTCGCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTCCCAGATGTCGTAGTCTGA 712 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || ||||| ||||| ||||| | || || |||| ||||| || || Sbjct 711 GAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAGTAGCAGATGCTGCTGGTCAGGTGG 652 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| |||||| || || || | | |||| | || || Sbjct 651 GATACCCTCCTTGTCTTGAATTTTGGCTTTGACATCCTCATTGGTGTCACTGGGCTTGAC 592 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | || || ||||||||||| || |||||||||||||| ||||| Sbjct 591 CTCAAGAGTGATGGTCTTGCCCGTAAGTGTCTTCACAAAGATCTGCAT 544 >seq3 Length=21509657 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || ||| ||||| |||||| || | || ||| | || ||||| || Sbjct 6625571 GTGCAGGATGGACTCTTTCTGGATGTTGCAGCCTGAGAGAGCGCGGCCATCCTCCAGCTG 6625630 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| || || ||||||| ||||| ||||| | || | ||||||||| | |||||| Sbjct 6625631 TTTGCCCGCAAATATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTGGCTTGAATTTT 6625690 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||| ||||| | ||| || |||||||| | Sbjct 6625691 GGCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGC 6625750 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||| ||||| Sbjct 6625751 GAGGGTCTTCACAAAGATCTGCAT 6625774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395020150345093