Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1989 219 4e-52 seq2631 127 2e-24 seq4087 122 8e-23 seq1678 114 1e-20 seq7448 93.3 4e-14 >seq1989 Length=5200062 Score = 219 bits (242), Expect = 4e-52 Identities = 487/727 (67%), Gaps = 14/727 (2%) Strand=Plus/Minus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 || ||||| | ||||| || | ||||| || ||||||||||| || ||| |||| Sbjct 4401869 ACTCCCATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGT 4401815 Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 14023 || ||||| |||||||| |||||||| || | | || || || | |||| ||| Sbjct 4401814 GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGT 4401755 Query 14024 TCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATA 14083 || | ||| || || | ||||||| ||||| ||||| | |||||||| Sbjct 4401754 TCCGGCATG--TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAATTCATC 4401697 Query 14084 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 14143 || || || || ||||| | | || | ||||| | |||||| ||||| | | Sbjct 4401696 CCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTG 4401637 Query 14144 TTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTA 14201 | || | || | || | || || | | | | || || || || || | Sbjct 4401636 ATAATTCT--TCCTCTTATTCTCTCCTCCAGTGGTTTGTGTGCCAGGTGATTGAACATCA 4401579 Query 14202 AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 14261 || ||||||||||| || | |||||||||| |||||||||||| || ||||| || | Sbjct 4401578 GGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGA 4401519 Query 14262 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGA 14321 || ||||||| ||||||||| || | ||| ||||| | || || | || ||||||| Sbjct 4401518 GGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA 4401459 Query 14322 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG 14381 | || || |||||||||| ||| | ||||| ||| | | ||| ||||| | Sbjct 4401458 ---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCC 4401402 Query 14382 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14441 ||||| | ||||| || | || || | | || ||| |||||||| |||| Sbjct 4401401 CAATCCAGTGCAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAATGGCAT 4401342 Query 14442 TAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501 | || | |||| | |||| | | | ||||| || |||||||| || ||||||| Sbjct 4401341 TGAAGCGAAATTCCCTTACTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACA 4401282 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561 || |||| |||||||||||||| || || || || ||| | ||||| | ||||||| | Sbjct 4401281 TTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCA 4401222 Query 14562 ATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 || || ||| | | ||| || |||| ||| |||| ||||| |||||||| ||| Sbjct 4401221 CCTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGCTA 4401162 Query 14622 CAAAAAA 14628 |||| || Sbjct 4401161 CAAAGAA 4401155 >seq2631 Length=7319754 Score = 127 bits (140), Expect = 2e-24 Identities = 238/345 (69%), Gaps = 5/345 (1%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 2079009 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 2078950 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||||| |||| |||| | | ||| ||||| || || || || |||||||| Sbjct 2078949 CCAGGCATCAGTCCTTGTTTCCTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 2078890 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 | | || ||| ||||| ||| | ||||||||| | | | ||||||| Sbjct 2078889 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACATCTTTGTTCCCA 2078830 Query 14384 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||| | || |||| | | || || || | | | ||||||| |||| ||||| Sbjct 2078829 ATCCA-ACACAAGACCCAAACTGCCTTCTTCTTGA-CACAGGCATTGTTCCAATGGCATT 2078772 Query 14443 AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14502 || | | |||| | ||||| || | |||| ||| |||||||| | |||| || Sbjct 2078771 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATG--TGTGTCAATAAGGAGACTATTTAT 2078714 Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547 ||||| ||||||||||| |||| || || || |||||||| || Sbjct 2078713 GTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAAAACCA 2078669 >seq4087 Length=903614 Score = 122 bits (134), Expect = 8e-23 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 28058 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 27999 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAA 14593 || ||||| ||||| | ||||||| || || ||| | ||||| || |||| Sbjct 27998 AAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAG 27939 Query 14594 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 |||||||| ||||| ||||| || |||||||| || |||| Sbjct 27938 TTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCCA 27899 >seq1678 Length=10304083 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 209199 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 209258 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || ||||||||||| || || || ||||||||||| | Sbjct 209259 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 209318 Query 14346 CTATTAATCGTTCTCC 14361 ||| | ||||| || Sbjct 209319 CTACGACACGTTCACC 209334 Score = 86.0 bits (94), Expect = 6e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 211311 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 211370 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 211371 AAGCCATAGAAACAGCGGGCTTCTG 211395 >seq7448 Length=2529 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 1450 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1392 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 1391 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 1332 Query 13975 CATAAAATCAAATGGATT 13992 |||||| |||||||| || Sbjct 1331 CATAAAGTCAAATGGGTT 1314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482276666784440