Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6459 111 1e-19 seq3835 109 5e-19 seq5683 98.7 9e-16 seq8115 91.5 1e-13 seq888 91.5 1e-13 seq4141 86.0 6e-12 seq2485 86.0 6e-12 seq4692 84.2 2e-11 >seq6459 Length=15015882 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||| || ||||| || || || ||||| || || || || Sbjct 12316856 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 12316797 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| |||||||| || ||||| ||||||||||| ||||| ||| Sbjct 12316796 CCCAGGTTCTGCTGGTTGCTCTTTCGATTACAAGAATCTTTGTAGAGCATATACGGGGTG 12316737 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || || || || ||||| ||||| || Sbjct 12316736 CCTGTTTCTGTTTGAGACTCAATGATGGC 12316708 >seq3835 Length=881625 Score = 109 bits (120), Expect = 5e-19 Identities = 166/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 142607 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAG 142549 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||||| || || | ||| ||| ||||||||| | || ||| Sbjct 142548 CCCAGTGACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCC 142489 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | || Sbjct 142488 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 142429 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || ||||| ||||| || || ||||| || | ||||| || |||| Sbjct 142428 TACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGTA 142374 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 142374 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 142315 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | || ||| || |||||| | || ||||||||| Sbjct 142314 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCCGACCAG 142255 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| ||| | || || ||| Sbjct 142254 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 142195 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| || || ||||| || | ||||| || |||| Sbjct 142194 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTA 142146 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 142146 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 142087 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | || || || |||||| | || ||||||||| Sbjct 142086 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCCCCCGACCAG 142027 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| ||| | || || ||| Sbjct 142026 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGACTACAAC 141967 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || ||||| || || ||||| || | |||||||| || Sbjct 141966 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGGTGG 141920 >seq5683 Length=19003911 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || | |||||||| |||||| | || || || | Sbjct 4210693 CAAACATGCAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGC 4210634 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| | || | |||||| | ||| |||||||| || | || || | Sbjct 4210633 CCAGTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTG 4210574 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||||||||| ||||| || ||||||||| ||||||| ||| | || | Sbjct 4210573 ACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACT 4210514 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 | ||||| || ||||| || || || || ||||| Sbjct 4210513 ACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 4210480 >seq8115 Length=33050683 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 15/220 (7%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || | ||||| || || || ||| | || |||||||| | Sbjct 31332478 ATGCAGATTTTCGTGAAAACCTTTACAGGGAAGACCATTACCCTTGAGGTTGAACCCTTG 31332537 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCGACC 31310 ||| | |||| || || | |||| | ||| |||||||| | || || || | Sbjct 31332538 AACACAATAGAAAATGTAAAG--GCCAATATCCAGGATAAGGAAGGAATTCCTCCTGATC 31332595 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||| | || || || |||||||| |||||||||| ||| || || || | Sbjct 31332596 AGCAAAGACTGATCTTTGCTGGCAAGCAGTTGGAAG-----ATGTCT------GACTACA 31332644 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||| || || ||||||||||| || | ||||| Sbjct 31332645 ACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 31332684 >seq888 Length=8072957 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| |||||| | || || || || || || || |||||| || | ||||||| Sbjct 5993578 CAAAAATGCAGATTTTCCTGAAAACCCTTACGGGGAAGACCATCACCCTCAAAGTTGAAC 5993519 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || || | | |||| || || | || ||| |||||||| | || || | Sbjct 5993518 CCTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTG 5993459 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGAT 31366 | ||||| | || || || |||||||| || ||||||| | | | ||| || || Sbjct 5993458 ATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGAC 5993400 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || |||||||| || || ||||||||||| || | ||||| Sbjct 5993399 TACAATATTCAAAAGGAGTCTACTCTTCATCTTGTTTTGAGACT 5993356 >seq4141 Length=17607553 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| |||||||| || || || || || || || |||||| |||| ||||||| Sbjct 16722815 CAAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAAC 16722874 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || || | | |||| || || | || ||| |||||||| | || || | Sbjct 16722875 CCTCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTG 16722934 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGAT 31366 | ||| | || || || |||||||| || ||||||| | | | ||| || || Sbjct 16722935 CTCCGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGAC 16722993 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || | |||||| || || ||||||||||| || | ||||| Sbjct 16722994 TACAATAGTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 16723037 >seq2485 Length=14009840 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31191 ACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250 ||||||| || | |||||||| || ||||| | ||| |||||| | || || | || Sbjct 703872 ACATGCAGATCTCTGTAAAGACCCTCACAGGAAGAACCATCACCTTTGAGGTCCAGCCCA 703813 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| |||||| | || |||||||| ||| | || || |||| Sbjct 703812 GTGACACCAGTGAAAACGTCAAAGCCAAGATCCATGACAAGGAGGGCATCCCACCTGACC 703753 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||| ||| ||||| | |||||||||||||| || ||| | ||||||| Sbjct 703752 AGCAGCATCTGATATTTGTGGGCAAACAGTTGGAGGATGGCCACACTCTTTCAGATTATA 703693 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||| || ||||| || || || || |||| ||| Sbjct 703692 ACATCCAGAAAGAGTCCACCCTGCAGGTGGTGCTT 703658 >seq4692 Length=25524837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||| | || || || || || || || |||||| |||| |||||||| Sbjct 22647815 AAAATGCAGATTTTCATGAAAACCCTTACGGG-AAGACCATCACCCTCGATGTTGAACCC 22647757 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | | |||| || || | |||| | ||| |||||||| | || || | Sbjct 22647756 TCGGATACGATAGAAAATGTAAAGGCCGAGA-TCCAGGATAAGGAAGGAATTCCTCCTGC 22647698 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||| | || || |||||||| || ||||||| | |||| || || || Sbjct 22647697 TCAGCAAAGAGGGATCTTTGCTGGCAAGCAACTGGAAGATGCATGGACTTTGTCTGACTA 22647638 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || |||||||| || || ||||||||||| || | ||||| Sbjct 22647637 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 22647596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445702694409360