Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1989 208 7e-49 seq2631 125 7e-24 seq10880 114 1e-20 seq4087 111 1e-19 seq6459 93.3 4e-14 >seq1989 Length=5200062 Score = 208 bits (230), Expect = 7e-49 Identities = 502/753 (67%), Gaps = 25/753 (3%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| |||||| | ||||| || | |||| || | || || || || ||||| | | Sbjct 4401870 CACTCCCATCCTCTGATACTCCTTTACTC-TCTTCTCAAAGAAGTTCGTCTTTC-----A 4401817 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| |||| |||||||||| ||| || || | ||| |||| || || | |||| | Sbjct 4401816 GTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCA 4401757 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 || | | ||| ||||| || | || || || || ||||| | ||||||| Sbjct 4401756 GTTCCGGCATG--TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAATTCA 4401699 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || || | ||| || | || | || | || |||| |||||| ||| |||| Sbjct 4401698 TCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCAT 4401639 Query 11568 CAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTA 11627 || ||| | |||| |||| |||| ||| | || || ||||| | Sbjct 4401638 TGATAATTCTTCCTCTTATTCTCTCCTCCAGTGGTTTGTGTGCCAGGTGATTGAACATCA 4401579 Query 11628 AACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTA 11687 || ||||||||||| |||||||| || |||| ||| || |||||||| ||||| || | Sbjct 4401578 GGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGA 4401519 Query 11688 ATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGA 11747 || ||||||| ||||||||| || | ||| ||||| | ||||| ||||||||||| Sbjct 4401518 GGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG- 4401460 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA------TACCTTGTTGC 11801 || || ||| | || ||||| |||| || | ||| ||||| | | |||| | Sbjct 4401459 --ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCC 4401402 Query 11802 TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861 | ||||| | ||||||||| || ||| || || || ||| ||||| || | Sbjct 4401401 CA---ATCCAGTGCAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAATGG 4401345 Query 11862 CGTTAAA--TAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACT 11919 | || || |||| | || || | |||| ||| || || || || | ||||| Sbjct 4401344 CATTGAAGCGAAATTC--CCTTACTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACT 4401287 Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 ||||||| | ||||| || |||||||| || ||||| || ||| ||||||| || || || Sbjct 4401286 ATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTC 4401227 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 || ||| || || | ||| ||| | || || ||||||| || |||||||| Sbjct 4401226 TGTCACCTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACT 4401167 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAA 12072 | | |||| || | || | ||| |||||| Sbjct 4401166 TGCTACAAAGAAAACCAGAACATGGGATATAAA 4401134 >seq2631 Length=7319754 Score = 125 bits (138), Expect = 7e-24 Identities = 242/349 (69%), Gaps = 16/349 (5%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| | ||| |||||||| || || || || || |||||||| |||||||| | Sbjct 2079009 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 2078950 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| |||| |||| | | ||| ||||| ||||| |||||||||||||| Sbjct 2078949 CCAGGCATCAGTCCTTGTTTCCTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 2078890 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA----CCTTGTTGCTA 11803 | | ||||| ||||| ||| | || | |||||||| || | ||||| | | Sbjct 2078889 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACATCTTTGTTCCCA 2078830 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| | ||||| | || ||||| || || || ||||||| | || || Sbjct 2078829 ---ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTCCAATGGCA 2078774 Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | | |||| | ||||| | |||||| ||| || ||| || || | | ||||| Sbjct 2078773 TTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATGTGTGTCAATAAGGAGACTAT 2078718 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA 11970 || || ||||| || ||||| |||| ||||| || ||||| || || Sbjct 2078717 TTATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAAAACCA 2078669 >seq10880 Length=11791330 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 10272721 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 10272780 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 10272781 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 10272840 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 10272841 CCACCACTCTTTCCCC 10272856 >seq4087 Length=903614 Score = 111 bits (122), Expect = 1e-19 Identities = 220/325 (68%), Gaps = 8/325 (2%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||| ||| || || || || | | |||||||||||| ||||| || |||||||| || Sbjct 28065 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 28006 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 ||||| || ||||||||||| || || |||| | ||| || || ||||| || Sbjct 28005 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 27946 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 | | || || |||||||| || ||||| || | |||||| || || || | ||| ||| Sbjct 27945 CACCAAGTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGGAATAT 27886 Query 12070 AAAGTATTTTTC----GTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAAT 12125 ||| ||| | || | ||| || | ||||| | | | || || || | | Sbjct 27885 AAAATATCTCTCCTCGGGCTTCAGGGA----TTCCCAGTGCTGAATGTCCTTGGACAGGT 27830 Query 12126 CTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCAT 12185 | || || || ||||||| || ||| | | | |||||||| | ||||||||| | Sbjct 27829 CCACCTCCTCGGCGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAGATATCGT 27770 Query 12186 GATACTTAATAGGGAAAATAACGAA 12210 | |||| || |||| || || || Sbjct 27769 GGTACTCGATGAGGAAGATGACAAA 27745 >seq6459 Length=15015882 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||| Sbjct 12325970 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 12325911 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 12325910 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 12325851 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 12325850 CTGTTTCTTATACCAT 12325835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468457841949520