Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq9111 134 1e-26 seq2220 107 2e-18 seq8779 102 7e-17 >seq9111 Length=11462142 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| || |||| || || || |||||||||||||||||||| || | Sbjct 5684304 TCAGGCCCGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 5684245 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | || |||||||||||||||||||||||||| | Sbjct 5684244 GCACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCA 5684185 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | || || ||||| || |||||| Sbjct 5684184 CCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATC 5684141 >seq2220 Length=7499480 Score = 107 bits (118), Expect = 2e-18 Identities = 252/369 (68%), Gaps = 16/369 (4%) Strand=Plus/Plus Query 21279 CTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCG 21338 ||||| || ||||||||||| ||||| ||||| || || || || |||| || || || Sbjct 3702202 CTGTATTCTGCCCCAAAATGCCTCCA-TGGAAGCCATA-ACTGGACCCAAGTC-CCTTCT 3702258 Query 21339 CGGCGGTCCCC-GAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCG-TCCCAA 21395 | | || ||| ||| | || | |||||||| | ||||| || | || ||||| Sbjct 3702259 TCTCTGGCCGGAGAACCCCAG-GCTGTCCAAAAAGTCTCGGGATCCATTTGCAATCCCAG 3702317 Query 21396 ATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGC 21455 ||||| || || | ||||| || | | | ||||| ||| |||||||||||||| Sbjct 3702318 ATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGC 3702377 Query 21456 AACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAA------- 21508 |||||||||| | |||| || || || | |||||| | | |||||||||| Sbjct 3702378 AACTCCTCCAAAAACACCCTTCAGAA-ACACGTTTGGTTG-TCACAGAGGAAATTCATCT 3702435 Query 21509 CTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGT 21568 ||| | || ||| | || || ||||| | ||||| || ||| |||||| |||||| Sbjct 3702436 CTCAGCTCTCAGGCTGTAGCGCGCCTGCATGCCGAATACCGACAGGGTGCCGGTGCCCGT 3702495 Query 21569 CCTGTCCTCCCTCTGCACGCCGTGTTTAATAATTAAATCCAGGTGCGCCAAGTACTGCAG 21628 | ||| ||| || |||||| | || || | ||| ||| ||||||||| Sbjct 3702496 GCGGTCGTCCTTCCTGACGCCGCAGCGGAGGATGTGCTCGATCTGCCCCAGGTACTGCAG 3702555 Query 21629 CTCGCCGTG 21637 ||| ||||| Sbjct 3702556 CTCTCCGTG 3702564 >seq8779 Length=12928400 Score = 102 bits (112), Expect = 7e-17 Identities = 191/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || |||| || ||||| || ||||| || || ||||| | | Sbjct 5237531 TTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGT 5237472 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||| | | || | ||||||| | | | | ||| || ||||| ||||| ||||| Sbjct 5237471 TCTCTGTTGAGAACTAAATTAATTGTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 5237412 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || |||| | || || | | | Sbjct 5237411 AACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAAGGTGTG 5237352 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 |||||| |||| ||| || | | ||| || | || |||||| |||| | || || Sbjct 5237351 GTCATTCTCTGGAAACACCTGAATTCATTCCAGAGCGGCGGCCAGGGCAGTTCCCCATTC 5237292 Query 3203 TTACCAATTCCTAATTGTTCATCAACTGCAACGATGCAGTT 3243 || || || || | | || || || ||||||||||| Sbjct 5237291 TTGCCGATGCCCATGTTTTGGGACACAGCGACGATGCAGTT 5237251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427716393825840