Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1989 307 2e-78 seq4087 197 2e-45 seq2631 161 1e-34 seq6459 123 4e-23 seq1678 116 5e-21 seq10880 111 2e-19 seq7011 102 1e-16 seq1330 89.7 7e-13 >seq1989 Length=5200062 Score = 307 bits (340), Expect = 2e-78 Identities = 635/938 (68%), Gaps = 24/938 (3%) Strand=Plus/Minus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 49669 |||| |||||| |||| | | |||| ||| ||| | || |||| |||||||| Sbjct 4401919 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTCGACACCACTCCCATCC 4401860 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | || || || || | || || || || || || |||| | ||| ||||| | Sbjct 4401859 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 4401805 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 |||| || ||||| || || || | ||| || |||| |||| ||| | || Sbjct 4401804 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG- 4401746 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 ||| || || ||| | || || ||| ||||| | |||||||| || || || | Sbjct 4401745 -TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 4401687 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909 | || || | ||| |||| || ||||| ||||| || || |||| | || | Sbjct 4401686 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTC 4401627 Query 49910 ATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAAT 49969 ||| | | || || ||| || | || || ||||||| || || |||| Sbjct 4401626 CTCTTATTCTCTCCTCCAGTGGTTTGTGTGCCAGGTGATTGAACATCAGGCAAGCAAAAT 4401567 Query 49970 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 50029 | ||||| | |||||| |||| |||||| ||||| |||||||| ||||| || ||||| | Sbjct 4401566 CACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCA 4401507 Query 50030 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTA 50089 | || || || || ||||| ||||| || ||||| | |||||||||| | ||||| Sbjct 4401506 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTCCG 4401450 Query 50090 CTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCT--GTCATGTATCCACTTTT 50146 |||| |||||| | |||| | || ||||| | || ||| ||| ||||| | Sbjct 4401449 CTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCA 4401390 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206 |||||||| ||| ||| || ||||||||||||||||| |||||||| ||| || | | Sbjct 4401389 AGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 4401330 Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 50266 || | || |||||| | ||||| || || | | |||||||||| | ||||| | Sbjct 4401329 CCCTTACTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTA 4401270 Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326 ||||||| ||||| || || || || ||||||| | || || || | ||| |||||| Sbjct 4401269 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 4401210 Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 | | |||| || | || ||| |||| ||||| || ||||| ||| |||| || ||| Sbjct 4401209 GGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGCTACAAAGAAAACCA 4401150 Query 50387 ATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG----ATA 50442 ||||| |||||||| | | || | ||| | || ||||| || || || Sbjct 4401149 GAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAG-GGATTCC---CAGTGCCAAATG 4401094 Query 50443 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 50502 || || || | || || || ||| | ||||| || || || || ||||| |||||||| Sbjct 4401093 TCCTTGGACAGGTCCACCTCCTCCGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 4401034 Query 50503 TTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 | |||||| ||||| || | | | ||||| || ||||| Sbjct 4401033 TGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 4400996 >seq4087 Length=903614 Score = 197 bits (218), Expect = 2e-45 Identities = 277/387 (72%), Gaps = 5/387 (1%) Strand=Plus/Minus Query 50159 CCTTCTTTTTTACACA----AGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttC 50213 ||||||| || || || |||||||||||| ||||| ||| | || | | |||| Sbjct 28131 CCTTCTTCTTGACCCAGCGAAGGCATCGTTTCATATGGGATTGAGAGGAAATTCCCTTTC 28072 Query 50214 ATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTC 50273 || |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| Sbjct 28071 TTTGGGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTC 28012 Query 50274 AATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAA 50333 ||||| || || || || |||||||| | || || |||||||| |||||| | ||| Sbjct 28011 CATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAA 27952 Query 50334 TCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 50393 ||| || | || |||||||| ||||| || || || |||||||| || |||| ||||| Sbjct 27951 TCGCTCCACCAAGTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATG 27892 Query 50394 TTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 50453 |||||||| | | || | ||| | || | ||| | | || || || || | Sbjct 27891 GAATATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCTGAATGTCCTTGGACAG 27832 Query 50454 ATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 50513 || || || || | ||||| || || ||||| ||||| |||||||| | |||||| || Sbjct 27831 GTCCACCTCCTCGGCGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAGATATC 27772 Query 50514 ATGATATTGGATTGGGAAAATAACAAA 50540 || || | ||| |||| || ||||| Sbjct 27771 GTGGTACTCGATGAGGAAGATGACAAA 27745 >seq2631 Length=7319754 Score = 161 bits (178), Expect = 1e-34 Identities = 294/417 (71%), Gaps = 15/417 (4%) Strand=Plus/Minus Query 49972 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 50031 ||||| | |||||| || || ||||| ||||| |||||||| ||||| || ||||| || Sbjct 2078997 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 2078938 Query 50032 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACT 50091 || | || | ||||| ||||| ||||| || |||||||||||| | | ||| ||| Sbjct 2078937 CCTTGTTTCCTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 2078878 Query 50092 GCGGCAAAGGCAACAAGTCTCTCTCCA----TAACTGGCGCTGTCATGTATCC-ACTTTT 50146 ||||||||| ||| | |||||| |||| | ||| |||| || Sbjct 2078877 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAAC-ATCTTTGTTCCCAATCCAACACAA 2078819 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206 || ||||| | |||||||| || |||| |||||| ||| | |||||||| |||||| | | Sbjct 2078818 GA-CCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGGCATTGAAGAGAAATT 2078761 Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 50266 |||| || |||||||| || || || || | ||||||| || || ||||| | Sbjct 2078760 CCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATGTCAGAATGTA 2078703 Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG-CCTCGGTAATCTGCA-CTTC 50324 ||||||| | || || || || || || || || | || |||||||| | ||| Sbjct 2078702 TGTTTTCTGTAGCAATTTGGAAGCCATAAAACCAGAAGGAGTTCTGTAATCTGAATTTTC 2078643 Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTAT-TCCGTCACTGGCTGCAAAAA 50380 || || |||| || || | || ||||||| |||||| || |||| ||||||||| Sbjct 2078642 TGAAC-AAATTGTCCA-CCAAGTTTTCATCCACTATCCCCATCACATCCTGCAAAAA 2078588 >seq6459 Length=15015882 Score = 123 bits (136), Expect = 4e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || || || || ||||||| Sbjct 12328824 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 12328765 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 12328764 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 12328705 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||||||||||| | |||| | ||| || |||| Sbjct 12328704 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGATCATCAGGAA 12328654 Score = 109 bits (120), Expect = 8e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 79935 CTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 79994 || |||||||||||| |||||||| |||||||||||||| | || |||||||||| | Sbjct 12315207 CTCTACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 12315148 Query 79995 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 80054 ||||| || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 12315147 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 12315088 Query 80055 CGGTTCCAAGTATATGGC 80072 || |||| ||| || || Sbjct 12315087 AGGCTCCAGGTAAATAGC 12315070 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 12325970 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 12325911 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 12325910 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 12325851 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 12325850 CTGTTTCTTATACCATA 12325834 >seq1678 Length=10304083 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| |||||||| ||||| || ||||| || || || || | Sbjct 209199 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 209258 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 209259 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 209318 Query 50102 CAAC 50105 | || Sbjct 209319 CTAC 209322 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 211304 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 211363 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 211364 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 211423 >seq10880 Length=11791330 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 10272723 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 10272782 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 10272783 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 10272842 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 10272843 ACCACTCTTTCCCC 10272856 >seq7011 Length=47169369 Score = 102 bits (112), Expect = 1e-16 Identities = 176/255 (69%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| || | || || || || ||| | || ||| ||||| || Sbjct 6213776 TCCAGTGGAACCAAAACCACCTGAACCCCTTTCGGTGTCATCCAAAGCTTGAACTTCTTC 6213717 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||||||| | || |||| | || ||||| || |||| ||| || | || || Sbjct 6213716 TATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCGTTTTTGAC 6213657 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 6213656 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 6213597 Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939 ||||| |||||| |||||| |||||| | |||| | || || |||| ||||| Sbjct 6213596 ATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGGAGC 6213537 Query 47940 TATTCTACCATAGCA 47954 || ||| ||||| || Sbjct 6213536 TACTCTTCCATAACA 6213522 >seq1330 Length=10395599 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCT--TGAGCTCCTC-TATCTGTACTATCTAGAGATTGTACTTC 47759 |||||| || ||||| ||| ||| | || | | | || ||| | || ||| ||||| Sbjct 2358174 TCCAGTGGAACCAAAACCTCCTGAACCCCCCCTTTAGGTGTCATCCAAAGCTTGAACTTC 2358115 Query 47760 CTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATT 47819 || | ||| |||||| | || |||| | | || ||||| || |||| ||| | | | || Sbjct 2358114 TTCTATTTCCGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACACTTTTT 2358055 Query 47820 TACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATC 47879 || | ||| | ||| ||| |||| || | || || | ||||| |||||||| Sbjct 2358054 GACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATC 2357995 Query 47880 TTCGTCTATTACACCACCTCCTATATCAAT 47909 ||| ||||| |||||| |||||| |||||| Sbjct 2357994 TTCATCTATGACACCAGCTCCTACATCAAT 2357965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718166150410120